Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 2.4e-155 552.4 333 100.0
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 8.3e-55 218.4 286 48.6
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.3e-49 200.3 286 45.8
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 6.8e-49 198.7 282 48.2
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.2e-48 198.0 287 44.3
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 8.3e-47 191.8 288 43.1
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 4.2e-38 162.9 230 44.8
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 5.6e-27 125.9 113 61.9
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 5.6e-27 125.9 149 49.0
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 7.3e-27 125.6 160 45.6
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 7.3e-27 125.6 160 50.0
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 9.6e-27 125.2 147 49.0
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.3e-26 124.8 149 47.0
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 1.6e-26 124.4 141 51.1
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 1.6e-26 124.4 160 48.8
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 1.6e-26 124.4 157 45.9
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 2.1e-26 124.0 160 48.8
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 2.1e-26 124.0 157 47.1
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 2.8e-26 123.6 189 41.3
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 2.8e-26 123.6 154 48.1
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 2.8e-26 123.6 143 51.7
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 3.6e-26 123.2 151 47.7
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 3.6e-26 123.2 117 56.4
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 3.6e-26 123.2 141 50.4
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 3.6e-26 123.2 167 45.5
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 4.8e-26 122.9 158 46.8
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 4.8e-26 122.9 200 41.0
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 4.8e-26 122.9 158 46.8
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 6.2e-26 122.5 164 48.8
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 6.2e-26 122.5 158 46.8
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 6.2e-26 122.5 149 47.0
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 6.2e-26 122.5 160 48.1
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.1e-25 121.7 144 49.3
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 1.1e-25 121.7 206 38.8
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 1.1e-25 121.7 112 59.8
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.4e-25 121.3 145 49.7
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.4e-25 121.3 142 50.0
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 1.4e-25 121.3 142 48.6
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 1.8e-25 120.9 116 56.0
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.8e-25 120.9 163 45.4
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 1.8e-25 120.9 142 50.0
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 1.8e-25 120.9 141 49.6
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.8e-25 120.9 145 47.6
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 1.8e-25 120.9 157 44.6
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.4e-25 120.6 158 44.9
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.4e-25 120.6 158 44.9
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 2.4e-25 120.6 158 44.9
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 2.4e-25 120.6 141 48.2
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 3.1e-25 120.2 144 48.6
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 3.1e-25 120.2 201 39.8
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 3.1e-25 120.2 141 47.5
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.1e-25 120.2 112 58.0
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 3.1e-25 120.2 147 46.9
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 3.1e-25 120.2 141 48.2
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 3.1e-25 120.2 141 49.6
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 4.0e-25 119.8 158 45.6
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 4.0e-25 119.8 158 45.6
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 4.0e-25 119.8 157 45.9
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 4.0e-25 119.8 141 48.9
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 4.0e-25 119.8 150 47.3
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 5.3e-25 119.4 152 45.4
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 5.3e-25 119.4 158 44.3
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 5.3e-25 119.4 154 46.8
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 6.9e-25 119.0 192 42.7
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 9.0e-25 118.6 144 52.1
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 9.0e-25 118.6 111 55.0
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 9.0e-25 118.6 158 44.9
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 1.2e-24 118.2 197 39.6
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 1.2e-24 118.2 117 55.6
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 1.5e-24 117.9 143 50.3
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 1.5e-24 117.9 155 47.7
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 1.5e-24 117.9 155 47.7
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 1.5e-24 117.9 155 47.7
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.5e-24 117.9 141 47.5
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 1.5e-24 117.9 197 41.1
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.5e-24 117.9 158 44.3
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.5e-24 117.9 149 45.6
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 2.0e-24 117.5 147 46.3
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 2.0e-24 117.5 141 48.9
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 2.0e-24 117.5 148 48.0
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.0e-24 117.5 147 46.3
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 2.6e-24 117.1 149 45.0
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 2.6e-24 117.1 111 56.8
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 2.6e-24 117.1 141 48.2
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 3.4e-24 116.7 113 58.4
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 3.4e-24 116.7 141 48.9
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 4.5e-24 116.3 154 44.2
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 4.5e-24 116.3 147 46.3
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 4.5e-24 116.3 149 45.0
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 5.8e-24 115.9 109 57.8
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 7.6e-24 115.5 139 46.8
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 9.9e-24 115.2 160 43.8
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 1.3e-23 114.8 158 45.6
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 1.3e-23 114.8 158 45.6
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 1.3e-23 114.8 155 44.5
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 1.7e-23 114.4 147 48.3
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.7e-23 114.4 190 41.6
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.7e-23 114.4 190 41.6
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.7e-23 114.4 145 46.9
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 2.2e-23 114.0 234 37.6
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 2.2e-23 114.0 164 41.5
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 2.9e-23 113.6 157 46.5
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 2.9e-23 113.6 161 44.7
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 2.9e-23 113.6 147 45.6
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 3.8e-23 113.2 159 45.3
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 3.8e-23 113.2 267 36.7
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 4.9e-23 112.8 158 42.4
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 6.4e-23 112.5 147 46.9
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 6.4e-23 112.5 147 47.6
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.1e-22 111.7 157 45.2
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 1.1e-22 111.7 146 45.2
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 1.4e-22 111.3 160 43.8
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 1.9e-22 110.9 158 41.8
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.9e-22 110.9 157 44.6
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.9e-22 110.9 157 44.6
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 2.4e-22 110.5 223 36.3
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 2.4e-22 110.5 209 41.6
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.2e-22 110.2 157 44.6
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 4.2e-22 109.8 141 47.5
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 5.4e-22 109.4 158 44.9
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.4e-22 109.4 158 44.9
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 5.4e-22 109.4 144 44.4
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 5.4e-22 109.4 160 41.9
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 5.4e-22 109.4 161 44.1
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 5.4e-22 109.4 164 44.5
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 5.4e-22 109.4 141 46.8
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 7.1e-22 109.0 158 42.4
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 7.1e-22 109.0 113 54.9
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 1.2e-21 108.2 150 46.0
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.6e-21 107.8 196 38.8
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 2.7e-21 107.1 194 40.7
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 3.5e-21 106.7 147 43.5
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 6.0e-21 105.9 142 42.3
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 6.0e-21 105.9 139 46.0
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 7.9e-21 105.5 141 44.7
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 3.9e-20 103.2 147 42.9
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 1.1e-19 101.7 152 49.3
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.1e-19 101.7 152 49.3
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 1.5e-19 101.3 140 48.6
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 1.9e-19 100.9 112 50.9
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 2.5e-19 100.5 145 50.3
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 5.6e-19 99.4 195 36.9
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 1.5e-16 91.3 93 54.8
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 7.6e-16 89.0 257 32.7
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 8.4e-15 85.5 113 46.0
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 1.9e-14 84.3 112 45.5
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 3.5e-13 80.1 134 59.7
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 4.6e-13 79.7 88 53.4
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.3e-12 78.2 75 54.7
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 3.3e-11 73.6 76 51.3
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 2.1e-10 70.9 77 57.1
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.4e-09 68.2 82 50.0
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.5e-08 64.7 65 55.4
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.0e-08 64.3 76 51.3
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 7.6e-08 62.4 76 48.7
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 7.6e-08 62.4 48 66.7
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.3e-07 61.6 48 66.7
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.3e-07 61.6 48 66.7
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 1.3e-07 61.6 71 46.5


User provided reference genes

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