Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 2.1e-31 138.3 65 100.0
Mapoly0081s0079 Marchantia polymorpha HOM05D005783 ORTHO05D007042 2.8e-23 111.3 65 76.9
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 3.7e-23 110.9 65 76.9
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 4.0e-22 107.5 61 77.0
Pp3c19_4700 Physcomitrium patens HOM05D005783 ORTHO05D007042 5.3e-22 107.1 65 72.3
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 6.9e-22 106.7 65 73.8
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 6.9e-22 106.7 65 73.8
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 9.0e-22 106.3 65 73.8
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 9.0e-22 106.3 65 73.8
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 9.0e-22 106.3 65 73.8
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 1.2e-21 105.9 65 73.8
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 1.2e-21 105.9 65 73.8
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 1.2e-21 105.9 65 69.2
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 1.2e-21 105.9 65 72.3
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 1.5e-21 105.5 65 70.8
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 1.5e-21 105.5 65 73.8
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.5e-21 105.5 65 73.8
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 73.8
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 72.3
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 72.3
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 72.3
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 72.3
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 72.3
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 70.8
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 72.3
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 70.8
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 2.0e-21 105.1 60 78.3
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 73.8
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 73.8
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 72.3
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 72.3
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 3.4e-21 104.4 65 72.3
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 3.4e-21 104.4 65 72.3
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 3.4e-21 104.4 65 70.8
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.4e-21 104.4 65 72.3
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.4e-21 104.4 65 72.3
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 4.5e-21 104.0 65 73.8
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 4.5e-21 104.0 65 72.3
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 4.5e-21 104.0 65 72.3
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 4.5e-21 104.0 65 72.3
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 4.5e-21 104.0 65 72.3
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 4.5e-21 104.0 65 72.3
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 4.5e-21 104.0 65 72.3
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 5.8e-21 103.6 65 72.3
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 5.8e-21 103.6 65 70.8
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 7.6e-21 103.2 65 72.3
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 7.6e-21 103.2 65 72.3
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 69.2
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 63 73.0
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 72.3
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 72.3
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 1.7e-20 102.1 65 70.8
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 1.7e-20 102.1 65 69.2
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 1.7e-20 102.1 65 70.8
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 1.7e-20 102.1 65 70.8
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 2.2e-20 101.7 60 75.0
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 2.2e-20 101.7 61 73.8
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 69.2
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 70.8
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 69.2
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 69.2
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 70.8
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 2.9e-20 101.3 65 69.2
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 2.9e-20 101.3 65 70.8
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 70.8
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 70.8
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 69.2
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 69.2
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 70.8
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 69.2
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 69.2
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 69.2
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 69.2
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 67.7
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 70.8
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 69.2
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 69.2
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 70.8
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 6.5e-20 100.1 65 70.8
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 8.4e-20 99.8 65 70.8
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 8.4e-20 99.8 65 70.8
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 8.4e-20 99.8 65 70.8
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 8.4e-20 99.8 65 69.2
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 8.4e-20 99.8 65 69.2
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 1.1e-19 99.4 65 70.8
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 1.1e-19 99.4 65 70.8
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 1.1e-19 99.4 65 69.2
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 1.9e-19 98.6 65 69.2
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 2.5e-19 98.2 63 68.3
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 3.2e-19 97.8 65 67.7
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 3.2e-19 97.8 65 67.7
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 7.1e-19 96.7 65 67.7
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 7.1e-19 96.7 65 67.7
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 7.1e-19 96.7 65 67.7
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 7.1e-19 96.7 65 69.2
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 7.1e-19 96.7 65 67.7
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 7.1e-19 96.7 65 67.7
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 9.3e-19 96.3 65 67.7
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 9.3e-19 96.3 65 66.2
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 9.3e-19 96.3 60 71.7
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 1.2e-18 95.9 65 66.2
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 2.1e-18 95.1 60 70.0
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 2.1e-18 95.1 65 66.2
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 6.7e-17 90.1 73 60.3
BolC7t40500H Brassica oleracea HOM05D005783 ORTHO05D007042 1.1e-16 89.4 78 57.7
PRCOL_00002782 Prasinoderma coloniale HOM05D005783 ORTHO05D007042 1.1e-16 89.4 59 66.1
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 1.5e-16 89.0 93 50.5
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 1.9e-16 88.6 87 50.6
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 2.1e-15 85.1 83 53.0
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 4.8e-15 84.0 87 50.6
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.2e-13 79.3 99 44.4
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 5.9e-13 77.0 49 69.4
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 1.3e-12 75.9 47 74.5
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 6.5e-12 73.6 47 70.2
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 8.4e-12 73.2 116 37.9
MELO3C033129.2 Cucumis melo HOM05D005783 ORTHO05D007042 4.2e-11 70.9 59 62.7
BcaC03g16291 Brassica carinata HOM05D005783 ORTHO05D007042 1.8e-09 65.5 63 54.0
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.5e-08 61.6 63 52.4
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 5.7e-08 60.5 89 42.7
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 4.8e-07 57.4 38 71.1
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 4.8e-07 57.4 29 82.8
CAN.G304.1 Capsicum annuum HOM05D005783 ORTHO05D007042 6.3e-07 57.0 64 40.6
FAN24G2571 Fragaria x ananassa HOM05D005783 ORTHO05D007042 2.4e-06 55.1 47 57.4


User provided reference genes

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