Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.5e-84 315.8 217 100.0
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.1e-55 220.7 155 97.4
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.3e-42 175.3 207 64.3
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.1e-37 158.7 203 65.0
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 6.0e-30 135.2 251 52.6
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.3e-27 127.5 101 69.3
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 5.0e-16 89.0 82 53.7
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 2.5e-15 86.7 80 52.5
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 2.5e-15 86.7 80 52.5
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 2.5e-15 86.7 80 52.5
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 2.5e-15 86.7 80 52.5
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 2.5e-15 86.7 80 52.5
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 4.2e-15 85.9 91 47.3
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 7.2e-15 85.1 91 46.2
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 9.4e-15 84.7 91 46.2
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 2.1e-14 83.6 93 46.2
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 2.7e-14 83.2 108 42.6
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 2.7e-14 83.2 91 48.4
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 2.7e-14 83.2 91 48.4
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 2.7e-14 83.2 91 48.4
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 2.7e-14 83.2 79 53.2
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.6e-14 82.8 79 53.2
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.6e-14 82.8 79 53.2
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 6.1e-14 82.0 91 47.3
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 6.1e-14 82.0 89 46.1
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 2.3e-13 80.1 86 46.5
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 2.3e-13 80.1 96 43.8
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 2.3e-13 80.1 91 47.3
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 2.3e-13 80.1 83 51.8
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 3.9e-13 79.3 95 45.3
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 5.1e-13 79.0 89 44.9
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 5.1e-13 79.0 103 42.7
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 8.8e-13 78.2 86 48.8
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 2.0e-12 77.0 107 41.1
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 3.3e-12 76.3 88 46.6
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 3.3e-12 76.3 86 44.2
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 3.3e-12 76.3 91 48.4
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 4.4e-12 75.9 88 46.6
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 4.4e-12 75.9 106 41.5
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 4.4e-12 75.9 88 47.7
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 5.7e-12 75.5 106 41.5
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 5.7e-12 75.5 94 44.7
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 7.4e-12 75.1 101 43.6
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 7.4e-12 75.1 88 46.6
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 1.3e-11 74.3 95 45.3
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 1.3e-11 74.3 99 44.4
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 1.3e-11 74.3 80 47.5
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 1.7e-11 73.9 84 47.6
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.7e-11 73.9 87 49.4
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.7e-11 73.9 87 49.4
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 1.7e-11 73.9 90 45.6
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 1.7e-11 73.9 86 45.3
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 1.7e-11 73.9 115 39.1
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 1.7e-11 73.9 80 47.5
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.7e-11 73.9 80 47.5
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.7e-11 73.9 104 42.3
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 2.2e-11 73.6 87 44.8
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 2.2e-11 73.6 77 50.6
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.8e-11 73.2 88 45.5
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 2.8e-11 73.2 95 42.1
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 3.7e-11 72.8 77 49.4
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 3.7e-11 72.8 98 41.8
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 3.7e-11 72.8 88 45.5
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 3.7e-11 72.8 93 44.1
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 4.8e-11 72.4 87 44.8
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 4.8e-11 72.4 95 41.1
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 4.8e-11 72.4 91 42.9
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 4.8e-11 72.4 91 42.9
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 6.3e-11 72.0 99 42.4
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 6.3e-11 72.0 89 44.9
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 8.2e-11 71.6 95 43.2
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 8.2e-11 71.6 91 41.8
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 8.2e-11 71.6 99 42.4
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.1e-10 71.2 87 48.3
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 1.1e-10 71.2 88 47.7
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 1.8e-10 70.5 91 41.8
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 1.8e-10 70.5 86 43.0
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 2.4e-10 70.1 88 46.6
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.4e-10 70.1 88 45.5
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.4e-10 70.1 88 45.5
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 2.4e-10 70.1 102 40.2
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 2.4e-10 70.1 86 41.9
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 4.1e-10 69.3 105 39.0
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 5.3e-10 68.9 84 46.4
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 6.9e-10 68.6 112 39.3
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 6.9e-10 68.6 112 39.3
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 9.1e-10 68.2 102 39.2
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.5e-09 67.4 87 42.5
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 3.4e-09 66.2 77 39.0
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 3.4e-09 66.2 107 40.2
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 3.4e-09 66.2 95 41.1
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 4.5e-09 65.9 86 41.9
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 1.3e-08 64.3 81 42.0
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.1e-07 61.2 95 36.8
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 3.2e-07 59.7 103 35.9
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 5.5e-07 58.9 77 48.1
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.6e-06 57.4 59 44.1
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 1.6e-06 57.4 95 37.9
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 2.7e-06 56.6 78 38.5


User provided reference genes

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