Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 6.7e-108 394.0 201 100.0
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 7.2e-78 294.3 208 70.2
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 2.3e-76 289.3 199 72.9
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 3.3e-75 285.4 199 70.9
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 4.8e-74 281.6 191 72.3
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 1.1e-73 280.4 191 71.7
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 1.1e-73 280.4 199 72.9
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.4e-73 280.0 191 72.8
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 1.4e-73 280.0 199 69.8
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.4e-73 279.3 199 70.4
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 3.1e-73 278.9 198 70.7
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 4.1e-73 278.5 191 72.3
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 4.1e-73 278.5 191 70.7
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 5.3e-73 278.1 197 70.1
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 5.3e-73 278.1 196 69.9
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 7.0e-73 277.7 199 69.3
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.2e-72 276.9 191 71.7
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.2e-72 276.9 192 71.4
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 1.6e-72 276.6 194 69.6
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.6e-72 276.6 199 69.3
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 2.0e-72 276.2 202 69.3
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 2.0e-72 276.2 193 69.4
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 2.0e-72 276.2 198 68.7
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 2.0e-72 276.2 192 71.4
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 3.5e-72 275.4 193 70.5
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 3.5e-72 275.4 192 71.4
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 4.5e-72 275.0 201 69.2
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 4.5e-72 275.0 194 69.1
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 4.5e-72 275.0 201 69.2
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 4.5e-72 275.0 194 70.1
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 5.9e-72 274.6 191 71.2
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 5.9e-72 274.6 201 69.2
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 5.9e-72 274.6 192 71.4
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 7.7e-72 274.2 200 68.0
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 1.0e-71 273.9 191 71.7
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 1.0e-71 273.9 196 69.4
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.3e-71 273.5 200 70.0
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.3e-71 273.5 199 67.3
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 1.7e-71 273.1 199 69.8
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 2.2e-71 272.7 202 68.3
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 2.2e-71 272.7 199 69.3
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 3.8e-71 271.9 192 69.8
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 6.5e-71 271.2 200 68.5
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 8.5e-71 270.8 204 68.1
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 8.5e-71 270.8 196 68.9
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 8.5e-71 270.8 192 69.8
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.1e-70 270.4 220 62.7
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.1e-70 270.4 192 69.3
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 1.9e-70 269.6 200 68.0
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.9e-70 269.6 192 68.8
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.9e-70 269.6 199 68.3
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 3.2e-70 268.9 202 65.8
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 3.2e-70 268.9 200 68.0
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 4.2e-70 268.5 192 68.2
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 4.2e-70 268.5 192 69.3
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 4.2e-70 268.5 199 70.4
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 5.5e-70 268.1 200 68.0
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 9.4e-70 267.3 218 65.1
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 9.4e-70 267.3 190 68.9
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 1.2e-69 266.9 218 65.1
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.2e-69 266.9 194 67.5
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 1.2e-69 266.9 192 68.8
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.6e-69 266.5 224 60.7
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.6e-69 266.5 224 60.7
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.6e-69 266.5 192 68.2
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 2.7e-69 265.8 200 67.5
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.7e-69 265.8 200 67.5
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 2.7e-69 265.8 190 67.4
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 3.6e-69 265.4 194 69.1
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 3.6e-69 265.4 190 67.4
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 3.6e-69 265.4 192 66.7
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 4.7e-69 265.0 199 67.8
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 4.7e-69 265.0 200 66.0
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 4.7e-69 265.0 200 66.0
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 4.7e-69 265.0 189 68.8
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 6.1e-69 264.6 193 67.4
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 8.0e-69 264.2 199 68.8
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 8.0e-69 264.2 191 68.6
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 1.0e-68 263.8 199 67.8
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 1.0e-68 263.8 199 67.8
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 3.0e-68 262.3 192 67.2
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 4.0e-68 261.9 201 66.2
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 4.0e-68 261.9 191 69.1
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 8.8e-68 260.8 196 67.3
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 8.8e-68 260.8 199 67.3
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.7e-66 256.5 199 66.8
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.7e-66 256.5 199 66.8
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 8.3e-66 254.2 189 68.3
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 2.4e-65 252.7 199 64.8
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 3.1e-65 252.3 199 65.3
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 4.1e-65 251.9 199 64.8
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 7.0e-65 251.1 198 63.6
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 9.1e-65 250.8 196 65.3
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 9.1e-65 250.8 195 65.6
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.3e-63 246.9 189 66.7
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 1.3e-63 246.9 261 52.9
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 3.8e-63 245.4 195 64.6
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 3.8e-63 245.4 195 64.6
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 6.6e-63 244.6 195 64.1
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 6.6e-63 244.6 195 64.1
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.9e-62 243.0 186 67.2
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.5e-62 241.5 203 63.5
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 2.1e-61 239.6 191 65.4
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 4.7e-61 238.4 199 62.8
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.0e-60 235.3 268 51.1
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.2e-59 233.8 179 66.5
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 4.1e-57 225.3 190 60.0
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 7.0e-57 224.6 214 56.1
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 4.3e-54 215.3 165 64.2
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 8.0e-53 211.1 269 48.7
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.3e-50 203.8 160 66.9
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 9.2e-49 197.6 143 70.6
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 1.6e-48 196.8 167 62.9
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.8e-48 194.5 150 63.3
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.0e-47 194.1 191 57.6
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 6.6e-47 191.4 145 66.9
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 8.6e-47 191.0 154 63.0
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 1.5e-46 190.3 145 65.5
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 4.0e-44 182.2 191 51.3
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.2e-43 180.6 145 64.8
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 1.3e-42 177.2 130 71.5
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 5.1e-31 138.7 124 57.3
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 2.7e-24 116.3 188 38.8
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 3.0e-23 112.8 102 53.9
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 7.1e-17 91.7 188 37.2
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 6.0e-16 88.6 105 41.9
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 1.3e-13 80.9 49 69.4
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 3.1e-12 76.3 66 56.1
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 3.8e-10 69.3 50 62.0
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 4.9e-10 68.9 75 45.3
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 7.1e-09 65.1 54 63.0


User provided reference genes

Program Settings