Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 7.3e-281 970.3 648 100.0
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.5e-71 274.2 792 39.6
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 2.1e-70 271.2 826 39.0
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 6.1e-70 269.6 833 42.5
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 8.0e-70 269.2 752 40.8
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 2.0e-68 264.6 790 32.7
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 2.8e-67 260.8 792 42.2
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 8.3e-67 259.2 829 39.1
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 8.3e-67 259.2 834 37.6
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.2e-65 255.4 756 40.1
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.6e-65 255.0 750 36.7
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.6e-65 255.0 808 39.0
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.0e-65 254.6 891 39.8
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 3.5e-65 253.8 838 38.2
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 4.5e-65 253.4 815 38.5
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.3e-64 251.9 815 36.2
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 1.7e-64 251.5 847 39.2
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 2.3e-64 251.1 777 42.7
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 1.9e-63 248.1 851 39.6
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 2.5e-63 247.7 855 39.2
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 4.3e-63 246.9 883 31.5
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 9.5e-63 245.7 833 38.7
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 9.5e-63 245.7 818 40.1
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 1.2e-62 245.4 824 39.8
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.2e-62 245.4 823 39.4
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 6.1e-62 243.0 842 37.5
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 1.0e-61 242.3 828 39.7
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.0e-61 242.3 821 40.3
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 1.0e-61 242.3 888 35.9
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.4e-61 241.9 818 36.6
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 2.3e-61 241.1 799 36.8
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 5.2e-61 240.0 757 36.9
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 6.8e-61 239.6 855 37.0
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.2e-60 238.8 793 38.1
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.5e-60 238.4 775 38.5
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 2.0e-60 238.0 790 40.4
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 2.0e-60 238.0 846 37.9
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 9.8e-60 235.7 719 38.1
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 3.7e-59 233.8 848 37.6
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 3.7e-59 233.8 746 42.8
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 6.4e-59 233.0 774 37.1
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 8.3e-59 232.6 820 37.4
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 1.1e-58 232.3 803 37.2
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.1e-58 232.3 752 37.9
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.1e-58 232.3 851 37.3
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.1e-58 232.3 816 38.0
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.1e-58 232.3 849 38.2
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 1.9e-58 231.5 765 38.2
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 4.1e-58 230.3 845 36.3
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 4.1e-58 230.3 781 37.6
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.1e-58 230.3 849 38.0
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 5.4e-58 229.9 723 33.7
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 9.2e-58 229.2 824 31.1
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.2e-57 228.8 788 37.7
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.2e-57 228.8 799 37.7
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 2.7e-57 227.6 689 41.4
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 4.6e-57 226.9 791 39.7
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.0e-56 225.7 792 38.3
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.0e-56 225.7 800 39.8
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.7e-56 224.9 876 37.8
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.7e-56 224.9 772 35.2
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.7e-56 224.9 786 39.6
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 2.3e-56 224.6 716 37.6
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 2.3e-56 224.6 715 39.0
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 3.9e-56 223.8 832 37.1
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 5.0e-56 223.4 826 35.4
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 5.0e-56 223.4 772 35.6
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 5.0e-56 223.4 792 38.3
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 5.0e-56 223.4 774 36.2
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 6.6e-56 223.0 805 38.0
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 6.6e-56 223.0 792 35.6
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.1e-55 222.2 754 38.1
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.5e-55 221.9 750 37.9
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.5e-55 221.9 792 36.0
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.5e-55 221.1 804 33.7
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 3.3e-55 220.7 811 38.3
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 5.6e-55 219.9 847 35.9
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 7.3e-55 219.5 773 36.1
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 9.5e-55 219.2 752 38.4
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.2e-54 218.8 869 32.6
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 1.6e-54 218.4 773 40.5
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.6e-54 218.4 804 36.9
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 1.6e-54 218.4 852 34.7
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 2.1e-54 218.0 791 35.0
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 3.6e-54 217.2 811 36.6
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 4.7e-54 216.9 799 39.3
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 4.7e-54 216.9 775 37.4
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 4.7e-54 216.9 845 39.6
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 6.2e-54 216.5 821 36.4
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 8.0e-54 216.1 811 37.6
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 8.0e-54 216.1 799 36.9
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.4e-53 215.3 811 37.5
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.4e-53 215.3 771 37.2
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 2.3e-53 214.5 804 37.6
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 5.2e-53 213.4 715 36.2
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 5.2e-53 213.4 847 36.5
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 2.0e-52 211.5 820 35.1
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 2.0e-52 211.5 762 36.0
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 1.3e-51 208.8 853 35.1
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.3e-51 208.8 768 35.5
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.7e-51 208.4 821 36.9
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 3.7e-51 207.2 887 34.7
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 4.9e-51 206.8 811 36.1
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 1.4e-50 205.3 838 34.5
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 2.4e-50 204.5 828 36.4
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 2.4e-50 204.5 771 34.0
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 3.5e-49 200.7 744 37.4
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.7e-48 198.4 852 34.9
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 2.3e-48 198.0 747 37.6
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 6.6e-48 196.4 837 36.3
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 4.3e-47 193.7 851 34.5
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 4.3e-47 193.7 851 34.3
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 1.6e-46 191.8 804 36.2
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 1.6e-46 191.8 804 36.2
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 2.3e-45 188.0 819 36.0
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 7.5e-44 183.0 814 36.2
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 9.9e-44 182.6 660 41.5
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.3e-43 182.2 714 37.0
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.6e-41 175.3 789 36.8
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 1.7e-40 171.8 240 42.9
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 3.9e-40 170.6 271 38.7
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.3e-39 167.2 232 41.8
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 8.1e-38 162.9 269 39.8
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 9.2e-34 149.4 675 33.0
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 6.2e-30 136.7 260 38.1
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 6.2e-30 136.7 255 37.6
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 8.1e-30 136.3 287 38.3
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 6.9e-29 133.3 278 36.3
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 4.9e-27 127.1 372 33.6
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 8.4e-27 126.3 359 32.6
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.4e-26 125.6 142 50.0
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 3.5e-25 120.9 622 32.0
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.3e-22 112.5 126 46.8
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.6e-22 112.1 254 38.2
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 6.4e-19 100.1 174 42.5
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.6e-17 95.5 141 39.0
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.8e-13 82.0 73 47.9
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 5.8e-12 77.0 356 30.9
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 7.1e-10 70.1 103 41.7
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 4.6e-09 67.4 71 47.9
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 1.3e-06 59.3 72 44.4
PSO339G1828 Papaver somniferum HOM05D031134 ORTHO05D301998 6.2e-06 57.0 67 40.3
PSO339G4348 Papaver somniferum HOM05D031134 ORTHO05D302392 6.2e-06 57.0 67 40.3
PSO339G5906 Papaver somniferum HOM05D031134 ORTHO05D302295 6.2e-06 57.0 67 40.3


User provided reference genes

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