Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 5.5e-124 447.6 218 100.0
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 5.2e-74 281.6 224 62.1
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.4e-73 278.9 224 61.2
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 3.4e-73 278.9 226 60.2
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 4.4e-73 278.5 224 61.6
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 7.6e-73 277.7 224 61.2
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 7.6e-73 277.7 226 59.7
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.3e-72 276.9 224 61.2
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 1.7e-72 276.6 226 59.3
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 2.9e-72 275.8 223 59.6
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 3.8e-72 275.4 225 60.9
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 3.8e-72 275.4 226 58.8
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 3.8e-72 275.4 226 59.3
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 4.9e-72 275.0 224 60.7
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.9e-72 275.0 226 58.8
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 4.9e-72 275.0 226 59.3
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 4.9e-72 275.0 226 59.7
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 6.4e-72 274.6 223 60.5
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 8.4e-72 274.2 226 59.7
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 8.4e-72 274.2 226 59.3
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.1e-71 273.9 226 59.3
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.1e-71 273.9 226 60.2
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 1.4e-71 273.5 224 59.8
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.4e-71 273.5 226 58.4
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.9e-71 273.1 224 59.8
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 1.9e-71 273.1 224 59.8
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.9e-71 273.1 226 58.4
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 1.9e-71 273.1 224 57.6
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 2.4e-71 272.7 225 59.1
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 4.2e-71 271.9 225 59.6
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 4.2e-71 271.9 226 57.5
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 5.4e-71 271.6 226 58.8
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 5.4e-71 271.6 224 60.3
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 7.1e-71 271.2 224 60.7
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 7.1e-71 271.2 225 59.6
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 7.1e-71 271.2 224 57.1
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 9.3e-71 270.8 224 59.4
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 9.3e-71 270.8 224 59.8
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 9.3e-71 270.8 226 58.0
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 9.3e-71 270.8 226 59.7
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 1.2e-70 270.4 226 58.0
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.2e-70 270.4 225 57.8
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.2e-70 270.4 225 58.7
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 1.2e-70 270.4 225 58.7
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.6e-70 270.0 224 59.4
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.6e-70 270.0 226 59.3
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.6e-70 270.0 225 59.6
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.6e-70 270.0 226 59.3
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.6e-70 270.0 227 59.0
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 2.1e-70 269.6 226 58.4
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 2.7e-70 269.2 226 58.4
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 2.7e-70 269.2 226 58.8
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 3.5e-70 268.9 226 58.4
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 4.6e-70 268.5 229 59.4
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 6.0e-70 268.1 226 58.4
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 7.8e-70 267.7 225 58.7
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 7.8e-70 267.7 226 58.8
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-69 266.9 225 58.2
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 1.7e-69 266.5 225 58.7
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.3e-69 266.2 224 58.0
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 2.3e-69 266.2 221 57.9
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-69 266.2 225 58.2
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 2.3e-69 266.2 226 58.0
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.0e-69 265.8 226 58.4
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 3.9e-69 265.4 226 57.1
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.1e-69 265.0 231 57.1
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 6.6e-69 264.6 221 59.7
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 8.7e-69 264.2 222 55.4
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 1.1e-68 263.8 224 57.6
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-68 263.8 225 58.2
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.5e-68 263.5 225 58.2
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.5e-68 263.5 228 57.0
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.9e-68 263.1 243 54.7
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.5e-68 262.7 255 52.2
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 2.5e-68 262.7 226 56.6
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 3.3e-68 262.3 225 58.2
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 5.6e-68 261.5 225 58.7
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 5.6e-68 261.5 226 57.5
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 7.3e-68 261.2 227 59.5
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-67 260.4 225 56.9
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.6e-67 260.0 226 56.2
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.1e-67 259.6 244 54.1
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.8e-67 259.2 225 58.2
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.8e-67 259.2 226 57.1
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 2.8e-67 259.2 224 57.6
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 2.4e-66 256.1 226 56.2
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 2.6e-65 252.7 221 57.0
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 3.4e-65 252.3 226 57.5
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 3.4e-65 252.3 250 52.0
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 8.4e-64 247.7 222 55.4
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.4e-63 246.9 231 54.5
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 2.5e-60 236.1 223 53.4
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 2.8e-59 232.6 187 59.4
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 6.2e-59 231.5 225 53.3
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 8.1e-59 231.1 226 52.7
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.1e-58 230.7 226 53.1
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 2.4e-58 229.6 225 52.0
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.1e-58 229.2 226 52.2
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 6.9e-58 228.0 226 51.8
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 2.0e-57 226.5 226 52.2
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.8e-57 224.9 223 51.6
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 5.8e-57 224.9 189 56.6
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.3e-56 223.8 221 53.4
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 8.4e-56 221.1 188 56.4
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.2e-54 217.2 225 51.6
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.1e-54 216.5 196 54.1
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 7.9e-54 214.5 226 49.6
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-50 204.1 217 47.9
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 1.8e-50 203.4 223 50.2
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.9e-50 201.4 189 52.9
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 3.4e-49 199.1 225 47.1
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 8.4e-48 194.5 210 49.5
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 6.0e-46 188.3 253 42.3
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 7.9e-46 188.0 172 52.9
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 7.9e-46 188.0 177 55.9
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.8e-45 186.8 256 42.6
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 5.1e-45 185.3 189 48.7
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 4.3e-44 182.2 233 40.3
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 2.8e-43 179.5 228 46.1
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 6.3e-43 178.3 256 43.8
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 2.4e-42 176.4 225 47.6
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.0e-37 161.0 152 53.3
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-36 157.5 218 39.9
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 1.1e-36 157.5 298 35.6
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 5.7e-36 155.2 142 54.2
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 7.4e-36 154.8 221 40.7
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 1.0e-32 144.4 135 53.3
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.7e-30 136.3 142 48.6
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.8e-29 133.7 89 67.4
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 6.3e-27 125.2 128 50.8
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.4e-26 124.0 83 65.1
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.6e-22 110.5 239 29.7
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 2.1e-22 110.2 87 58.6
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 6.7e-21 105.1 91 52.7
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.4e-20 102.4 108 45.4
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 6.3e-19 98.6 145 39.3
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.4e-18 96.7 107 45.8
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.0e-17 93.6 116 45.7
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 1.3e-16 90.9 88 50.0
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 3.8e-16 89.4 60 70.0
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.9e-15 87.0 59 69.5
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 2.5e-15 86.7 65 64.6
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.6e-14 82.8 87 48.3
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 8.0e-14 81.6 54 61.1
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 1.0e-13 81.3 86 48.8
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 7.5e-12 75.1 193 30.6
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.7e-11 72.8 92 40.2
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.0e-08 64.7 54 44.4
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 3.8e-08 62.8 50 52.0


User provided reference genes

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