Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO111G0141 Selaginella moellendorffii HOM05D005025 ORTHO05D006499 2.8e-129 465.3 239 100.0
SMO358G0265 Selaginella moellendorffii HOM05D005025 ORTHO05D006499 2.1e-31 140.2 74 89.2
SMO008G0001 Selaginella moellendorffii HOM05D005025 ORTHO05D006499 3.0e-30 136.3 66 95.5
Sed0025660 Sechium edule HOM05D005025 ORTHO05D006499 2.0e-18 97.1 112 46.4
Sp1g28560 Schrenkiella parvula HOM05D005025 ORTHO05D006499 2.6e-18 96.7 78 52.6
PSO063G6878 Papaver somniferum HOM05D005025 ORTHO05D006499 4.5e-18 95.9 112 46.4
Mapoly0124s0022 Marchantia polymorpha HOM05D005025 ORTHO05D006499 5.8e-18 95.5 86 52.3
BcaB03g13744 Brassica carinata HOM05D005025 ORTHO05D006499 1.0e-17 94.7 78 51.3
BcaC05g27877 Brassica carinata HOM05D005025 ORTHO05D006499 1.3e-17 94.4 78 51.3
C05p38840 Brassica napus HOM05D005025 ORTHO05D006499 1.3e-17 94.4 78 51.3
Cpa.g.sc90.19 Carica papaya HOM05D005025 ORTHO05D006499 1.7e-17 94.0 78 50.0
ClCG09G011740 Citrullus lanatus HOM05D005025 ORTHO05D006499 1.7e-17 94.0 112 45.5
MELO3C003429.2 Cucumis melo HOM05D005025 ORTHO05D006499 1.7e-17 94.0 112 45.5
CsaV3_3G048940 Cucumis sativus L. HOM05D005025 ORTHO05D006499 1.7e-17 94.0 112 45.5
PSO782G1926 Papaver somniferum HOM05D005025 ORTHO05D006499 2.9e-17 93.2 112 46.4
Cpa.g.sc90.18 Carica papaya HOM05D005025 ORTHO05D006499 3.8e-17 92.8 112 43.8
CiPaw.12G066500 Carya illinoinensis HOM05D005025 ORTHO05D006499 3.8e-17 92.8 113 43.4
Thhalv10007022m.g Eutrema salsugineum HOM05D005025 ORTHO05D006499 3.8e-17 92.8 112 43.8
THA.LOC104814425 Tarenaya hassleriana HOM05D005025 ORTHO05D006499 3.8e-17 92.8 112 43.8
Hma1.2p1_0303F.1_g118820 Hydrangea macrophylla HOM05D005025 ORTHO05D006499 6.5e-17 92.0 78 51.3
Rhsim11G0018800 Rhododendron simsii HOM05D005025 ORTHO05D006499 6.5e-17 92.0 112 44.6
Sc22g0001670 Simmondsia chinensis HOM05D005025 ORTHO05D006499 6.5e-17 92.0 112 42.9
Cfa012482 Carpinus fangiana HOM05D005025 ORTHO05D006499 8.4e-17 91.7 112 46.4
A05p24990 Brassica napus HOM05D005025 ORTHO05D006499 1.1e-16 91.3 78 50.0
BraA05t21382Z Brassica rapa HOM05D005025 ORTHO05D006499 1.1e-16 91.3 78 50.0
CARHR103750 Cardamine hirsuta HOM05D005025 ORTHO05D006499 1.4e-16 90.9 77 51.9
Ciclev10011251m.g Citrus clementina HOM05D005025 ORTHO05D006499 1.4e-16 90.9 112 43.8
Pp3c6_18080 Physcomitrium patens HOM05D005025 ORTHO05D006499 1.4e-16 90.9 78 48.7
Dinv28982 Davidia involucrata HOM05D005025 ORTHO05D006499 1.9e-16 90.5 112 42.0
Lsat_1_v5_gn_3_18960 Lactuca sativa HOM05D005025 ORTHO05D006499 1.9e-16 90.5 78 51.3
Lsat_1_v5_gn_3_19020 Lactuca sativa HOM05D005025 ORTHO05D006499 1.9e-16 90.5 78 50.0
QL12p004468 Quercus lobata HOM05D005025 ORTHO05D006499 1.9e-16 90.5 112 42.9
TWI60G0579 Tripterygium wilfordii HOM05D005025 ORTHO05D006499 1.9e-16 90.5 79 49.4
MD06G1037600 Malus domestica HOM05D005025 ORTHO05D006499 2.5e-16 90.1 112 42.9
Carub.0001s3071 Capsella rubella HOM05D005025 ORTHO05D006499 3.2e-16 89.7 112 41.1
Haze_08183 Corylus avellana HOM05D005025 ORTHO05D006499 3.2e-16 89.7 112 45.5
GSVIVG01013115001 Vitis vinifera HOM05D005025 ORTHO05D006499 3.2e-16 89.7 112 41.1
SEGI_40920 Sequoiadendron giganteum HOM05D005025 ORTHO05D006499 4.2e-16 89.4 78 52.6
CSS0033528 Camellia sinensis var. sinensis HOM05D005025 ORTHO05D006499 5.5e-16 89.0 112 42.0
HanXRQChr17g0538241 Helianthus annuus HOM05D005025 ORTHO05D006499 5.5e-16 89.0 79 49.4
Nn3g19421 Nelumbo nucifera HOM05D005025 ORTHO05D006499 5.5e-16 89.0 112 42.0
Hund14353 Selenicereus undatus HOM05D005025 ORTHO05D006499 5.5e-16 89.0 78 50.0
TAR629G1702 Trochodendron aralioides HOM05D005025 ORTHO05D006499 5.5e-16 89.0 112 41.1
AT1G32340 Arabidopsis thaliana HOM05D005025 ORTHO05D006499 7.1e-16 88.6 112 40.2
Oeu028876.1 Olea europaea HOM05D005025 ORTHO05D006499 9.3e-16 88.2 112 42.0
Prupe.5G031400 Prunus persica HOM05D005025 ORTHO05D006499 9.3e-16 88.2 112 41.1
TAR636G2380 Trochodendron aralioides HOM05D005025 ORTHO05D006499 9.3e-16 88.2 135 37.8
CBR_g40898 Chara braunii HOM05D005025 ORTHO05D006499 1.2e-15 87.8 79 50.6
ECA246G3826 Erigeron canadensis HOM05D005025 ORTHO05D006499 1.2e-15 87.8 78 48.7
Peaxi162Scf00045g00139 Petunia axillaris HOM05D005025 ORTHO05D006499 1.2e-15 87.8 112 42.9
Potri.001G139400 Populus trichocarpa HOM05D005025 ORTHO05D006499 1.2e-15 87.8 112 42.9
Actinidia25983 Actinidia chinensis HOM05D005025 ORTHO05D006499 1.6e-15 87.4 112 41.1
Aqoxy3G02237 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 1.6e-15 87.4 76 51.3
CARHR031710 Cardamine hirsuta HOM05D005025 ORTHO05D006499 1.6e-15 87.4 112 40.2
Cc08_g03170 Coffea canephora HOM05D005025 ORTHO05D006499 1.6e-15 87.4 112 42.0
Duzib068G0767 Durio zibethinus HOM05D005025 ORTHO05D006499 1.6e-15 87.4 112 41.1
Eucgr.E00258 Eucalyptus grandis HOM05D005025 ORTHO05D006499 2.1e-15 87.0 112 42.0
Manes.17G009400 Manihot esculenta HOM05D005025 ORTHO05D006499 2.1e-15 87.0 115 40.9
COL.COLO4_16974 Corchorus olitorius HOM05D005025 ORTHO05D006499 2.7e-15 86.7 107 42.1
Gohir.D12G209700 Gossypium hirsutum HOM05D005025 ORTHO05D006499 2.7e-15 86.7 112 42.0
Gorai.008G225300 Gossypium raimondii HOM05D005025 ORTHO05D006499 2.7e-15 86.7 112 42.0
Thecc.03G306700 Theobroma cacao HOM05D005025 ORTHO05D006499 3.5e-15 86.3 112 40.2
MSTRG.12173 Avicennia marina HOM05D005025 ORTHO05D006499 4.6e-15 85.9 112 40.2
Gohir.A12G207300 Gossypium hirsutum HOM05D005025 ORTHO05D006499 4.6e-15 85.9 112 41.1
HPP92_025674 Vanilla planifolia HOM05D005025 ORTHO05D006499 4.6e-15 85.9 107 41.1
Atru.chr6.1624 Acer truncatum HOM05D005025 ORTHO05D006499 6.0e-15 85.5 112 40.2
CBR_g37671 Chara braunii HOM05D005025 ORTHO05D006499 6.0e-15 85.5 79 50.6
Nitab4.5_0000556g0080 Nicotiana tabacum HOM05D005025 ORTHO05D006499 6.0e-15 85.5 112 39.3
PGSC0003DMG400017847 Solanum tuberosum HOM05D005025 ORTHO05D006499 6.0e-15 85.5 78 44.9
EL10Ac5g12057 Beta vulgaris HOM05D005025 ORTHO05D006499 7.9e-15 85.1 112 40.2
CAN.G1522.10 Capsicum annuum HOM05D005025 ORTHO05D006499 7.9e-15 85.1 78 46.2
DCAR_021701 Daucus carota HOM05D005025 ORTHO05D006499 7.9e-15 85.1 63 52.4
DCAR_032084 Daucus carota HOM05D005025 ORTHO05D006499 1.0e-14 84.7 135 34.1
Lj2A235G62 Lonicera japonica HOM05D005025 ORTHO05D006499 1.0e-14 84.7 112 40.2
CAN.G1522.5 Capsicum annuum HOM05D005025 ORTHO05D006499 1.3e-14 84.3 78 44.9
Lalb_Chr05g0215861 Lupinus albus HOM05D005025 ORTHO05D006499 1.3e-14 84.3 81 46.9
AUR62018689 Chenopodium quinoa HOM05D005025 ORTHO05D006499 2.3e-14 83.6 112 42.9
Glyma.09G206500 Glycine max HOM05D005025 ORTHO05D006499 2.3e-14 83.6 115 41.7
Nitab4.5_0010978g0020 Nicotiana tabacum HOM05D005025 ORTHO05D006499 2.3e-14 83.6 112 38.4
Sopen08g001160 Solanum pennellii HOM05D005025 ORTHO05D006499 3.9e-14 82.8 112 38.4
Solyc08g005150.3 Solanum lycopersicum HOM05D005025 ORTHO05D006499 5.1e-14 82.4 112 38.4
SalBow6G4293 Salvia bowleyana HOM05D005025 ORTHO05D006499 6.7e-14 82.0 112 38.4
Aqoxy3G02236 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 8.7e-14 81.6 86 45.3
Sabra01G0108400 Salix brachista HOM05D005025 ORTHO05D006499 1.1e-13 81.3 77 44.2
Phvul.002G138700 Phaseolus vulgaris HOM05D005025 ORTHO05D006499 1.5e-13 80.9 115 40.9
VMungo1215G2298 Vigna mungo HOM05D005025 ORTHO05D006499 1.5e-13 80.9 115 40.9
Carub.0245s0001 Capsella rubella HOM05D005025 ORTHO05D006499 2.5e-13 80.1 83 42.2
Migut.A01080 Erythranthe guttata HOM05D005025 ORTHO05D006499 3.3e-13 79.7 129 38.8
unitig_32.g11504 Utricularia gibba HOM05D005025 ORTHO05D006499 3.3e-13 79.7 112 38.4
arahy.Tifrunner.gnm1.ann1.7UXP3N Arachis hypogaea HOM05D005025 ORTHO05D006499 4.3e-13 79.3 115 40.0
arahy.Tifrunner.gnm1.ann1.U5ZP0C Arachis hypogaea HOM05D005025 ORTHO05D006499 4.3e-13 79.3 115 40.0
AUR62007316 Chenopodium quinoa HOM05D005025 ORTHO05D006499 4.3e-13 79.3 112 42.0
HanXRQChr17g0538221 Helianthus annuus HOM05D005025 ORTHO05D006499 5.7e-13 79.0 49 63.3
SGA_v2.0_scaffold36G14307 Striga asiatica HOM05D005025 ORTHO05D006499 5.7e-13 79.0 112 40.2
Zm00001eb072220 Zea mays HOM05D005025 ORTHO05D006499 7.4e-13 78.6 78 47.4
Os04g0593600 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D006499 1.3e-12 77.8 112 41.1
Cre01.g018900 Chlamydomonas reinhardtii HOM05D005025 ORTHO05D006499 2.2e-12 77.0 95 46.3
ATR0829G096 Amborella trichopoda HOM05D005025 ORTHO05D006499 2.8e-12 76.6 112 39.3
AagrBONN_evm.TU.Sc2ySwM_344.4817 Anthoceros agrestis HOM05D005025 ORTHO05D006499 1.1e-11 74.7 81 43.2
Ciclev10013841m.g Citrus clementina HOM05D005025 ORTHO05D006499 1.1e-11 74.7 66 48.5
TPR.G8112 Trifolium pratense HOM05D005025 ORTHO05D006499 1.4e-11 74.3 115 40.0
MCO11G741 Micromonas commoda HOM05D005025 ORTHO05D006499 1.8e-11 73.9 83 42.2
Zm00001eb251320 Zea mays HOM05D005025 ORTHO05D006499 3.1e-11 73.2 78 41.0
AagrBONN_evm.TU.Sc2ySwM_344.5411 Anthoceros agrestis HOM05D005025 ORTHO05D006499 5.3e-11 72.4 82 43.9
TPR.G8110 Trifolium pratense HOM05D005025 ORTHO05D006499 5.3e-11 72.4 115 38.3
HanXRQChr17g0538251 Helianthus annuus HOM05D005025 ORTHO05D006499 1.2e-10 71.2 78 42.3
Aa31LG2G13680 Aethionema arabicum HOM05D005025 ORTHO05D006499 2.0e-10 70.5 112 36.6
Aqoxy3G02230 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 3.4e-10 69.7 86 39.5
Medtr5g029700 Medicago truncatula HOM05D005025 ORTHO05D006499 3.4e-10 69.7 115 37.4
Aqoxy3G02374 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 5.9e-10 68.9 78 39.7
CANSAT21G2346 Cannabis sativa HOM05D005025 ORTHO05D006499 1.0e-09 68.2 112 37.5
Ca_08154_v3 Cicer arietinum L. HOM05D005025 ORTHO05D006499 6.5e-09 65.5 98 40.8
FAN08G2980 Fragaria x ananassa HOM05D005025 ORTHO05D006499 2.5e-08 63.5 78 37.2
FvH4_5g22580 Fragaria vesca HOM05D005025 ORTHO05D006499 5.5e-08 62.4 112 34.8
FAN18G0203 Fragaria x ananassa HOM05D005025 ORTHO05D006499 5.5e-08 62.4 112 34.8
PSO782G4765 Papaver somniferum HOM05D005025 ORTHO05D006499 7.2e-08 62.0 69 37.7
RcHm_v2.0_Chr7g0210351 Rosa chinensis HOM05D005025 ORTHO05D006499 2.7e-07 60.1 112 34.8
PSO104G0015 Papaver somniferum HOM05D005025 ORTHO05D006499 3.6e-07 59.7 64 39.1
PSO104G0071 Papaver somniferum HOM05D005025 ORTHO05D006499 3.6e-07 59.7 64 39.1
PSO104G0107 Papaver somniferum HOM05D005025 ORTHO05D006499 3.6e-07 59.7 64 39.1
PSO104G0167 Papaver somniferum HOM05D005025 ORTHO05D006499 3.6e-07 59.7 64 39.1
FAN18G0071 Fragaria x ananassa HOM05D005025 ORTHO05D006499 4.6e-07 59.3 112 33.9
PSO384G4548 Papaver somniferum HOM05D005025 ORTHO05D006499 7.9e-07 58.5 56 46.4
A05p13760 Brassica napus HOM05D000554 ORTHO05D000860 1.8e-06 57.4 51 47.1
BraA05t20312Z Brassica rapa HOM05D000554 ORTHO05D000860 1.8e-06 57.4 51 47.1
Psat2g137720 Pisum sativum HOM05D005025 ORTHO05D006499 1.8e-06 57.4 98 37.8
AT2G31760 Arabidopsis thaliana HOM05D000554 ORTHO05D000860 8.8e-06 55.1 48 52.1


User provided reference genes

Program Settings