Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 3.1e-130 468.4 225 100.0
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 7.6e-52 208.0 223 49.8
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 4.9e-51 205.3 223 49.3
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 6.4e-51 204.9 223 48.9
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 6.4e-51 204.9 223 48.9
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 8.4e-51 204.5 223 50.2
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 5.5e-50 201.8 223 48.4
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 9.3e-50 201.1 223 48.4
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 1.6e-49 200.3 223 48.4
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 2.1e-49 199.9 223 48.0
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 2.1e-49 199.9 223 48.0
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 2.1e-49 199.9 224 47.8
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 2.7e-49 199.5 223 48.4
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 2.7e-49 199.5 223 48.4
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 2.7e-49 199.5 223 48.4
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 2.7e-49 199.5 223 48.4
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 2.7e-49 199.5 223 48.4
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 2.7e-49 199.5 223 48.4
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 2.7e-49 199.5 223 48.4
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 2.7e-49 199.5 223 48.4
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 2.7e-49 199.5 223 48.4
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 1.0e-48 197.6 219 48.9
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.3e-48 196.4 223 48.0
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.3e-48 196.4 223 48.0
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 3.9e-48 195.7 224 48.2
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 1.5e-47 193.7 222 47.3
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 2.5e-47 193.0 223 47.1
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 4.3e-47 192.2 223 47.1
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 3.7e-46 189.1 220 46.8
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 3.7e-46 189.1 220 46.8
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 3.7e-46 189.1 220 46.8
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 8.1e-46 188.0 213 47.4
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.8e-45 186.8 222 46.8
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 1.8e-45 186.8 222 46.8
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 1.8e-45 186.8 222 46.8
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.8e-45 186.8 222 46.8
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 1.8e-45 186.8 213 47.4
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 5.3e-45 185.3 212 48.1
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 2.0e-44 183.3 209 47.8
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 2.0e-44 183.3 209 47.8
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 2.0e-44 183.3 209 47.8
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 2.0e-44 183.3 209 47.8
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 2.0e-44 183.3 209 47.8
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.6e-44 183.0 215 44.2
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 2.6e-44 183.0 219 45.7
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 5.8e-44 181.8 213 46.9
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 1.0e-43 181.0 223 45.7
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 1.3e-43 180.6 223 44.4
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 1.7e-43 180.3 225 45.3
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 1.7e-43 180.3 225 45.3
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.9e-43 178.7 223 45.7
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 2.5e-42 176.4 211 46.9
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 3.2e-42 176.0 201 47.8
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 2.7e-41 172.9 219 44.7
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.0e-41 171.8 211 44.1
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 3.3e-39 166.0 223 43.5
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.3e-39 166.0 222 42.3
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 5.7e-39 165.2 240 41.2
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 2.4e-37 159.8 223 43.9
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.4e-37 159.8 218 41.7
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.1e-37 159.5 222 42.3
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 5.3e-37 158.7 219 43.8
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 7.2e-34 148.3 220 38.6
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.6e-33 147.1 223 39.9
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 7.9e-33 144.8 160 49.4
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.0e-32 144.4 163 49.1
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 2.3e-32 143.3 211 41.2
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 8.7e-32 141.4 160 48.1
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.7e-31 138.7 179 42.5
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 7.4e-31 138.3 219 39.3
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 7.4e-31 138.3 184 42.9
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.6e-30 137.1 177 42.4
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.6e-30 137.1 222 37.4
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 5.3e-29 132.1 182 45.1
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.2e-28 131.0 158 46.2
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 1.5e-28 130.6 181 42.5
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 1.0e-27 127.9 203 37.9
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 1.3e-27 127.5 178 42.1
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 1.3e-27 127.5 178 42.1
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 1.3e-27 127.5 178 42.1
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 1.3e-27 127.5 178 42.1
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 1.3e-27 127.5 178 42.1
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.9e-26 123.6 140 49.3
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 3.2e-26 122.9 127 53.5
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 4.2e-26 122.5 142 49.3
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.7e-25 119.8 140 48.6
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 1.0e-24 117.9 122 52.5
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 1.0e-24 117.9 122 52.5
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 1.0e-24 117.9 122 52.5
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.4e-24 117.5 142 47.9
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 3.0e-24 116.3 118 54.2
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 7.4e-23 111.7 139 46.0
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.8e-22 109.0 105 55.2
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 6.3e-22 108.6 183 36.6
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 6.3e-22 108.6 140 45.0
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 2.4e-21 106.7 166 38.0
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 6.9e-21 105.1 186 35.5
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-20 104.4 141 39.7
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 4.5e-20 102.4 149 38.9
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 7.7e-20 101.7 121 49.6
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.7e-19 100.5 103 51.5
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 5.0e-19 99.0 114 47.4
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 8.5e-19 98.2 136 44.1
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 1.9e-18 97.1 77 62.3
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.9e-18 97.1 127 47.2
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 1.9e-18 97.1 127 47.2
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.9e-18 97.1 127 47.2
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.9e-18 97.1 127 47.2
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.9e-18 97.1 127 47.2
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 1.9e-18 97.1 127 47.2
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 2.5e-18 96.7 100 54.0
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 5.5e-18 95.5 82 59.8
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 7.2e-18 95.1 127 46.5
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 9.4e-18 94.7 102 53.9
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 1.6e-17 94.0 127 45.7
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.1e-17 93.6 121 47.1
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.7e-17 93.2 90 56.7
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 4.7e-17 92.4 148 35.8
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 1.4e-16 90.9 90 60.0
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 2.3e-16 90.1 144 37.5
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 2.3e-16 90.1 72 63.9
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 3.0e-16 89.7 137 36.5
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.7e-16 88.6 105 47.6
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 6.7e-16 88.6 91 57.1
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 8.8e-16 88.2 72 61.1
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 1.5e-15 87.4 90 51.1
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 3.3e-15 86.3 131 35.9
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 3.3e-15 86.3 72 61.1
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 7.4e-15 85.1 72 59.7
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 9.7e-15 84.7 99 43.4
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-14 84.0 68 63.2
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-14 84.0 68 63.2
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.7e-14 82.8 72 59.7
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 3.7e-14 82.8 196 32.1
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.4e-13 80.9 122 41.0
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-13 80.5 71 59.2
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.1e-13 79.7 109 42.2
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 2.0e-12 77.0 72 55.6
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 3.5e-12 76.3 86 50.0
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 3.5e-12 76.3 96 44.8
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.8e-11 72.8 84 47.6
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 1.1e-10 71.2 127 33.9
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 1.5e-10 70.9 60 60.0
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 1.9e-10 70.5 99 35.4
CAN.G134.2 Capsicum annuum HOM05D002578 ORTHO05D005154 4.2e-10 69.3 74 43.2
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 7.2e-10 68.6 60 56.7
PGSC0003DMG400003499 Solanum tuberosum HOM05D002578 ORTHO05D005154 1.0e-08 64.7 69 44.9
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.0e-08 63.2 67 50.7
Lalb_Chr25g0282891 Lupinus albus HOM05D002578 ORTHO05D005154 4.0e-08 62.8 72 40.3
BraSC58t46504Z Brassica rapa HOM05D002578 ORTHO05D005154 7.5e-07 58.5 41 56.1
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 1.3e-06 57.8 94 38.3
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.7e-06 57.4 96 40.6
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 3.7e-06 56.2 91 40.7
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 4.8e-06 55.8 66 39.4


User provided reference genes

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