Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 9.2e-125 450.3 235 100.0
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.3e-62 243.8 244 58.6
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.7e-62 243.4 217 62.7
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.9e-62 242.7 243 58.4
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 2.5e-61 239.6 245 56.7
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 4.6e-60 235.3 239 58.2
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 2.3e-59 233.0 130 97.7
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.1e-59 231.9 245 56.7
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.1e-58 230.7 244 55.7
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 3.3e-58 229.2 252 55.2
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 4.3e-58 228.8 246 54.9
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 5.7e-58 228.4 234 56.8
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 7.4e-58 228.0 205 62.0
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.8e-57 226.1 209 61.7
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 2.8e-57 226.1 244 56.6
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.7e-57 225.7 235 55.7
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 8.2e-57 224.6 244 54.1
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 8.2e-57 224.6 235 55.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 8.2e-57 224.6 235 55.7
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.8e-56 223.4 205 62.4
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.4e-56 223.0 205 62.0
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.1e-56 222.2 235 55.7
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.1e-56 222.2 235 55.7
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 4.1e-56 222.2 209 59.3
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 6.9e-56 221.5 244 55.3
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 6.9e-56 221.5 244 53.3
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 9.1e-56 221.1 244 54.9
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 9.1e-56 221.1 244 54.9
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.1e-56 221.1 205 61.5
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 9.1e-56 221.1 257 53.7
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.2e-55 220.7 205 60.0
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.5e-55 220.3 205 61.0
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.5e-55 220.3 235 55.7
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.5e-55 220.3 241 53.1
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.0e-55 219.9 244 55.3
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.0e-55 219.9 205 61.0
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 2.6e-55 219.5 205 61.0
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.6e-55 219.5 245 54.7
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 2.6e-55 219.5 244 54.1
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 3.4e-55 219.2 205 60.0
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 4.5e-55 218.8 243 53.5
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 5.9e-55 218.4 205 60.0
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 7.7e-55 218.0 205 60.0
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.0e-54 217.6 206 59.7
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.0e-54 217.6 243 53.9
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.3e-54 217.2 206 59.2
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.3e-54 217.2 245 53.5
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.7e-54 216.9 205 59.0
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 2.9e-54 216.1 205 60.0
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 5.0e-54 215.3 213 57.3
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 8.5e-54 214.5 205 58.5
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.1e-53 214.2 249 53.4
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.9e-53 213.4 243 53.1
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.9e-53 213.4 243 53.1
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.9e-53 213.4 244 53.3
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.5e-53 213.0 243 53.1
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 2.5e-53 213.0 204 60.3
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.5e-53 213.0 213 56.8
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 2.5e-53 213.0 205 60.5
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 3.2e-53 212.6 204 59.3
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.2e-53 212.6 245 53.5
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 3.2e-53 212.6 204 58.3
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 4.2e-53 212.2 243 53.1
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 5.5e-53 211.8 234 54.7
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 5.5e-53 211.8 213 56.8
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 7.2e-53 211.5 244 52.5
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 7.2e-53 211.5 205 58.5
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 9.4e-53 211.1 205 59.0
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.2e-52 210.7 212 57.1
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.2e-52 210.7 205 57.6
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.2e-52 210.7 208 58.7
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.2e-52 210.7 229 52.8
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.6e-52 210.3 202 59.9
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.1e-52 209.9 245 53.1
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.7e-52 209.5 206 58.3
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 3.6e-52 209.1 204 59.8
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 3.6e-52 209.1 245 52.2
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 6.1e-52 208.4 244 51.6
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 6.1e-52 208.4 232 54.3
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 6.1e-52 208.4 205 58.5
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 7.9e-52 208.0 199 59.8
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.0e-51 207.6 207 58.0
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.0e-51 207.6 229 55.0
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.4e-51 207.2 239 51.0
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.4e-51 207.2 204 57.4
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 2.3e-51 206.5 202 58.9
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 3.0e-51 206.1 200 58.0
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.1e-50 204.1 205 57.1
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.5e-50 203.8 226 54.4
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.6e-50 203.0 189 61.9
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.3e-50 202.6 243 50.2
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 3.3e-50 202.6 244 51.2
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 5.7e-50 201.8 243 51.4
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 7.4e-50 201.4 247 51.0
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 9.7e-50 201.1 243 49.0
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.7e-49 200.3 199 57.8
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.7e-49 200.3 205 55.6
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.2e-49 199.9 208 55.8
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 2.8e-49 199.5 225 52.0
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.7e-49 199.1 244 50.0
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 8.2e-49 198.0 208 55.3
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 8.2e-49 198.0 244 50.0
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.1e-48 197.6 231 50.6
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.4e-48 196.4 205 54.6
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 3.1e-48 196.1 225 50.7
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 4.1e-48 195.7 231 49.8
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 5.3e-48 195.3 193 58.0
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.2e-47 194.1 231 50.6
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.6e-47 193.7 243 47.7
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.6e-47 193.0 225 50.7
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 4.5e-47 192.2 198 56.1
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 7.7e-47 191.4 238 49.2
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.3e-46 190.7 205 55.1
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.3e-46 190.7 211 52.1
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.7e-46 190.3 208 53.8
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.2e-46 189.9 196 56.6
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 3.2e-45 186.0 216 50.5
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 3.2e-45 186.0 216 50.5
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.2e-44 184.1 173 62.4
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.6e-44 183.7 216 50.0
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.6e-44 183.7 216 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 6.7e-43 178.3 196 54.1
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 6.7e-43 178.3 204 50.5
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 5.7e-42 175.3 183 57.4
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.8e-40 170.2 84 96.4
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 2.4e-40 169.9 229 44.1
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.7e-39 166.4 173 56.1
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 2.7e-39 166.4 200 50.0
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.7e-36 156.4 166 53.0
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 5.2e-35 152.1 197 46.7
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-32 144.4 167 53.9
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.2e-31 141.0 146 56.2
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 2.0e-26 123.6 183 45.9
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 3.8e-22 109.4 133 50.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 9.5e-21 104.8 174 40.8
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 5.2e-19 99.0 181 39.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.4e-18 96.3 110 51.8
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 2.7e-15 86.7 86 55.8
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 1.3e-14 84.3 188 34.6
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.5e-13 80.9 93 53.8
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 2.1e-12 77.0 64 62.5


User provided reference genes

Program Settings