Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI44367 Sapria himalayana HOM05D003395 ORTHO05D004087 8.2e-79 297.0 148 100.0
SHI45533 Sapria himalayana HOM05D003395 ORTHO05D004087 1.4e-73 279.6 148 95.9
SHI37781 Sapria himalayana HOM05D003395 ORTHO05D004087 6.5e-44 181.0 162 59.9
SHI34459 Sapria himalayana HOM05D003395 ORTHO05D004087 4.2e-43 178.3 177 57.1
SHI10456 Sapria himalayana HOM05D003395 ORTHO05D004087 9.5e-43 177.2 271 42.8
SHI40120 Sapria himalayana HOM05D003395 ORTHO05D004087 9.8e-40 167.2 103 82.5
SHI34713 Sapria himalayana HOM05D003395 ORTHO05D004087 1.2e-34 150.2 99 76.8
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 3.4e-32 142.1 202 41.1
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 8.3e-31 137.5 253 36.0
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 8.3e-31 137.5 253 36.0
SHI32287 Sapria himalayana HOM05D003395 ORTHO05D004087 3.2e-30 135.6 133 58.6
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 5.4e-30 134.8 252 35.3
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 7.0e-30 134.4 253 35.2
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 1.6e-29 133.3 253 35.2
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 2.7e-29 132.5 253 34.8
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 2.7e-29 132.5 252 34.5
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 3.5e-29 132.1 251 35.1
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 3.5e-29 132.1 253 35.2
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 1.0e-28 130.6 253 34.0
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 1.0e-28 130.6 252 34.1
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 1.7e-28 129.8 253 34.0
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 1.7e-28 129.8 252 34.5
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 2.3e-28 129.4 252 33.7
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 2.3e-28 129.4 253 33.2
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 2.3e-28 129.4 252 33.7
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 2.3e-28 129.4 253 34.0
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 3.9e-28 128.6 253 34.4
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 5.0e-28 128.3 241 34.4
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 8.6e-28 127.5 253 33.2
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 8.6e-28 127.5 253 33.6
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 8.6e-28 127.5 252 33.7
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 8.6e-28 127.5 253 32.8
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 1.1e-27 127.1 253 33.6
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 1.5e-27 126.7 253 33.2
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 1.5e-27 126.7 253 33.2
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 1.9e-27 126.3 252 31.7
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 1.9e-27 126.3 252 31.7
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 1.9e-27 126.3 107 57.9
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 2.5e-27 125.9 252 33.7
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 3.3e-27 125.6 252 33.7
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 4.3e-27 125.2 253 33.6
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 5.6e-27 124.8 107 57.9
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 5.6e-27 124.8 252 33.7
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 5.6e-27 124.8 252 32.9
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 7.3e-27 124.4 252 32.5
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 7.3e-27 124.4 107 56.1
SHI27325 Sapria himalayana HOM05D003395 ORTHO05D004087 7.3e-27 124.4 77 79.2
SHI51863 Sapria himalayana HOM05D003395 ORTHO05D004087 7.3e-27 124.4 147 51.0
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 9.5e-27 124.0 252 32.9
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 9.5e-27 124.0 253 33.6
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 1.2e-26 123.6 253 33.2
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.2e-26 123.6 253 33.2
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 1.2e-26 123.6 107 56.1
Gohir.A11G310000 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.6e-26 123.2 107 54.2
SHI33206 Sapria himalayana HOM05D003395 ORTHO05D004087 2.1e-26 122.9 191 44.0
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 2.1e-26 122.9 253 32.8
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.8e-26 122.5 253 32.8
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 3.6e-26 122.1 107 57.9
Eucgr.K02007 Eucalyptus grandis HOM05D003395 ORTHO05D004087 3.6e-26 122.1 252 32.9
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 4.7e-26 121.7 253 32.4
SHI20623 Sapria himalayana HOM05D003395 ORTHO05D004087 4.7e-26 121.7 205 39.5
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 6.2e-26 121.3 253 33.6
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 8.0e-26 120.9 248 33.1
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 8.0e-26 120.9 253 32.4
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 1.1e-25 120.6 252 33.3
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 1.4e-25 120.2 252 31.7
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 1.4e-25 120.2 107 56.1
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 1.4e-25 120.2 253 32.4
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 1.8e-25 119.8 252 32.5
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 1.8e-25 119.8 253 32.4
SHI48926 Sapria himalayana HOM05D003395 ORTHO05D004087 8.9e-25 117.5 147 50.3
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 1.5e-24 116.7 253 32.0
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 2.0e-24 116.3 253 32.0
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 2.6e-24 115.9 253 31.6
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 3.4e-24 115.5 253 30.8
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 7.5e-24 114.4 253 31.2
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 1.3e-23 113.6 107 51.4
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 1.3e-23 113.6 107 51.4
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 1.7e-23 113.2 253 30.8
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.7e-23 113.2 223 34.5
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 1.7e-23 113.2 253 30.8
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 4.9e-23 111.7 252 30.2
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 4.9e-23 111.7 253 29.6
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 4.9e-23 111.7 253 30.8
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 4.9e-23 111.7 107 53.3
Thhalv10005836m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 1.4e-22 110.2 107 50.5
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 2.4e-22 109.4 251 31.1
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 2.4e-22 109.4 253 31.2
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 2.4e-22 109.4 107 49.5
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 2.4e-22 109.4 107 49.5
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 2.4e-22 109.4 107 49.5
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 2.4e-22 109.4 107 49.5
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 2.4e-22 109.4 107 49.5
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 3.2e-22 109.0 107 48.6
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 3.2e-22 109.0 107 49.5
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 3.2e-22 109.0 107 49.5
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 4.1e-22 108.6 107 48.6
BcaB06g29192 Brassica carinata HOM05D003395 ORTHO05D004087 4.1e-22 108.6 107 49.5
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 4.1e-22 108.6 253 28.5
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 7.0e-22 107.8 250 30.0
SHI25400 Sapria himalayana HOM05D003395 ORTHO05D004087 7.0e-22 107.8 102 56.9
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 7.0e-22 107.8 253 29.6
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 9.2e-22 107.5 107 48.6
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 1.2e-21 107.1 253 30.8
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.2e-21 107.1 107 48.6
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 1.6e-21 106.7 107 48.6
SHI34448 Sapria himalayana HOM05D003395 ORTHO05D004087 1.6e-21 106.7 154 47.4
SHI28043 Sapria himalayana HOM05D003395 ORTHO05D004087 2.1e-21 106.3 79 68.4
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 2.7e-21 105.9 253 29.6
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 2.7e-21 105.9 253 28.9
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 2.7e-21 105.9 253 28.9
BcaC07g40053 Brassica carinata HOM05D003395 ORTHO05D004087 3.5e-21 105.5 253 28.5
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 3.5e-21 105.5 253 28.5
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 3.5e-21 105.5 253 28.5
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 3.5e-21 105.5 279 29.0
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 6.0e-21 104.8 279 29.0
CDE11G0065 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 7.8e-21 104.4 107 48.6
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 3.9e-20 102.1 106 48.1
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 1.9e-19 99.8 253 27.7
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 7.3e-19 97.8 109 47.7
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 9.5e-19 97.4 230 30.9
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 9.5e-19 97.4 230 30.9
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 2.8e-18 95.9 133 39.1
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 6.2e-18 94.7 189 33.9
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.1e-17 92.4 229 31.0
SHI43596 Sapria himalayana HOM05D003395 ORTHO05D004087 3.1e-17 92.4 133 46.6
Hma1.2p1_0556F.1_g178050 Hydrangea macrophylla HOM05D003395 ORTHO05D004087 5.2e-17 91.7 84 56.0
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 7.5e-16 87.8 230 28.3
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 7.5e-16 87.8 232 28.4
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 2.9e-15 85.9 90 51.1
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 4.9e-15 85.1 106 40.6
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 5.4e-14 81.6 84 50.0
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 7.1e-14 81.3 229 27.9
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 2.7e-13 79.3 84 47.6
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 3.5e-13 79.0 106 37.7
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 3.5e-13 79.0 106 37.7
SHI37552 Sapria himalayana HOM05D003395 ORTHO05D004087 3.9e-12 75.5 41 90.2
SHI37551 Sapria himalayana HOM05D003395 ORTHO05D004087 2.8e-10 69.3 43 81.4
SHI17502 Sapria himalayana HOM05D003395 ORTHO05D004087 1.4e-09 67.0 40 82.5
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 4.0e-09 65.5 110 32.7
SHI32634 Sapria himalayana HOM05D003395 ORTHO05D004087 4.4e-08 62.0 35 85.7
Lj3g0025487 Lotus japonicus HOM05D003395 ORTHO05D004087 3.2e-06 55.8 40 65.0
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 3.2e-06 55.8 40 65.0
CAN.G624.32 Capsicum annuum HOM05D003395 ORTHO05D004087 5.4e-06 55.1 54 51.9


User provided reference genes

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