Gene: AT2G41620
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G41620
- Transcript Identifier AT2G41620.1
- Gene Type Coding gene
- Location Chr2 : 17350419-17354997 : negative
Gene Family Information
- ID HOM05D003395
- #Genes/#Species 202/97
- Phylogenetic origin
- ID ORTHO05D004087
- #Genes/#Species 192/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT2G41620.1
- uniprot O22224
Descriptions
- Description Nucleoporin interacting component (Nup93/Nic96-like) family protein
- Computational description Nucleoporin interacting component (Nup93/Nic96-like) family protein; FUNCTIONS IN: protein binding; INVOLVED IN: transport; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin interacting component Nup93/Nic96 (InterPro:IPR007231); BEST Arabidopsis thaliana protein match is: Nucleoporin interacting component (Nup93/Nic96-like) family protein (TAIR:AT3G57350.1); Has 357 Blast hits to 350 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 130; Plants - 48; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0051028 | IEA | GOA Database | mRNA transport | |
| GO:0006606 | IBA | Gene Ontology | protein import into nucleus | 1 |
| GO:0016973 | IBA | Gene Ontology | poly(A)+ mRNA export from nucleus | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0017056 | IEA | GOA Database | structural constituent of nuclear pore | |
| GO:0017056 | IBA | Gene Ontology | structural constituent of nuclear pore | 1 |
| GO:0017056 | IEA | InterPro | structural constituent of nuclear pore | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005643 | IEA | GOA Database | nuclear pore | |
| GO:0005643 | IBA | Gene Ontology | nuclear pore | 1 |
| GO:0005643 | IEA | InterPro | nuclear pore | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0009506 | IDA | GOA Database | plasmodesma | |
| GO:0009506 | HDA | Gene Ontology | plasmodesma | 3 |
| GO:0005730 | IDA | GOA Database | nucleolus | |
| GO:0005730 | HDA | Gene Ontology | nucleolus | 4 |
| GO:0005635 | IEA | GOA Database | nuclear envelope | |
| GO:0005635 | IDA | Gene Ontology | nuclear envelope | 5 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007231 | Nucleoporin interacting component Nup93/Nic96 |
| Mapman id | Description |
|---|---|
| 23.5.1.1.3.1 | Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP93) |