Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI34448 Sapria himalayana HOM05D003395 ORTHO05D004087 2.6e-80 302.0 154 100.0
SHI10456 Sapria himalayana HOM05D003395 ORTHO05D004087 3.9e-55 218.4 206 62.6
SHI34713 Sapria himalayana HOM05D003395 ORTHO05D004087 2.3e-47 192.6 176 64.2
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 2.6e-43 179.1 188 54.3
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 4.4e-43 178.3 188 54.3
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 4.4e-43 178.3 184 54.3
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 5.8e-43 177.9 188 53.7
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 7.5e-43 177.6 187 52.4
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 1.7e-42 176.4 188 53.7
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 1.7e-42 176.4 184 55.4
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 3.7e-42 175.3 188 53.7
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 4.9e-42 174.9 187 54.0
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 8.3e-42 174.1 188 52.1
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 1.1e-41 173.7 188 52.7
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 1.4e-41 173.3 188 52.7
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 1.4e-41 173.3 188 52.1
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 1.9e-41 172.9 188 51.6
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 1.9e-41 172.9 188 51.6
Eucgr.K02007 Eucalyptus grandis HOM05D003395 ORTHO05D004087 3.2e-41 172.2 187 51.3
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 3.2e-41 172.2 184 54.3
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 3.2e-41 172.2 188 52.7
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 4.1e-41 171.8 188 52.7
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 4.1e-41 171.8 188 52.7
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 5.4e-41 171.4 188 52.1
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 5.4e-41 171.4 188 52.1
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 5.4e-41 171.4 188 51.1
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 5.4e-41 171.4 188 51.6
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 7.1e-41 171.0 188 50.5
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 7.1e-41 171.0 188 50.5
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 7.1e-41 171.0 188 51.6
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 7.1e-41 171.0 188 52.7
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 7.1e-41 171.0 188 51.6
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 7.1e-41 171.0 188 53.2
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 9.2e-41 170.6 187 51.3
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 9.2e-41 170.6 187 52.9
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 1.2e-40 170.2 188 51.6
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 2.1e-40 169.5 188 52.7
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 2.1e-40 169.5 188 51.6
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 2.7e-40 169.1 187 51.9
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 3.5e-40 168.7 188 51.6
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 7.8e-40 167.5 188 50.5
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 1.0e-39 167.2 188 50.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.0e-39 167.2 168 55.4
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 1.7e-39 166.4 188 51.6
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 2.3e-39 166.0 188 51.1
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.9e-39 165.2 188 50.5
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 3.9e-39 165.2 188 51.1
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 5.1e-39 164.9 188 51.1
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 6.6e-39 164.5 188 51.1
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 6.6e-39 164.5 188 50.5
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 6.6e-39 164.5 188 50.0
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 6.6e-39 164.5 188 52.1
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.1e-38 163.7 188 50.5
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 1.5e-38 163.3 187 48.1
Eucgr.K01765 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.5e-38 163.3 178 51.7
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 1.5e-38 163.3 188 50.0
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 1.9e-38 162.9 188 50.0
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 1.9e-38 162.9 188 49.5
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 2.5e-38 162.5 188 48.4
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 2.5e-38 162.5 188 50.5
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 3.3e-38 162.2 188 50.5
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 3.3e-38 162.2 189 47.6
SHI37551 Sapria himalayana HOM05D003395 ORTHO05D004087 4.3e-38 161.8 101 84.2
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 5.6e-38 161.4 188 48.9
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 7.3e-38 161.0 187 49.2
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 9.5e-38 160.6 185 50.8
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 1.2e-37 160.2 187 50.3
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 1.2e-37 160.2 188 47.3
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 1.2e-37 160.2 185 50.8
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 1.6e-37 159.8 188 49.5
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 1.6e-37 159.8 188 49.5
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 2.1e-37 159.5 187 51.3
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 2.8e-37 159.1 188 46.8
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 4.7e-37 158.3 188 48.9
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 6.2e-37 157.9 188 47.3
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 6.2e-37 157.9 186 49.5
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 8.1e-37 157.5 188 46.8
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 1.8e-36 156.4 184 50.0
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 2.3e-36 156.0 184 50.0
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 3.1e-36 155.6 187 49.7
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 4.0e-36 155.2 187 46.5
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 4.0e-36 155.2 187 46.5
BcaB06g29192 Brassica carinata HOM05D003395 ORTHO05D004087 5.2e-36 154.8 187 46.5
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 5.2e-36 154.8 187 46.5
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 5.2e-36 154.8 183 47.5
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 6.8e-36 154.5 188 48.4
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 8.9e-36 154.1 187 46.0
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 8.9e-36 154.1 187 46.0
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 8.9e-36 154.1 187 46.0
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 8.9e-36 154.1 196 48.5
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 8.9e-36 154.1 196 48.5
BcaC07g40053 Brassica carinata HOM05D003395 ORTHO05D004087 1.2e-35 153.7 183 47.0
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 1.2e-35 153.7 183 47.0
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 1.2e-35 153.7 183 47.0
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 1.5e-35 153.3 179 48.6
Hma1.2p1_0556F.1_g178050 Hydrangea macrophylla HOM05D003395 ORTHO05D004087 1.5e-35 153.3 217 45.2
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 2.6e-35 152.5 188 46.8
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 3.4e-35 152.1 183 47.0
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 3.4e-35 152.1 183 47.0
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 7.6e-35 151.0 184 48.9
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 1.7e-34 149.8 187 45.5
CAN.G624.32 Capsicum annuum HOM05D003395 ORTHO05D004087 1.7e-34 149.8 188 48.4
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 1.7e-34 149.8 187 46.0
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 2.9e-34 149.1 187 46.5
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 2.9e-34 149.1 187 44.9
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 3.7e-34 148.7 188 45.7
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 3.7e-34 148.7 187 44.9
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 8.4e-34 147.5 179 46.9
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 4.1e-33 145.2 195 45.1
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 7.1e-33 144.4 119 63.9
Thhalv10005836m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 7.1e-33 144.4 161 49.1
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 7.1e-33 144.4 183 45.9
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 1.6e-32 143.3 189 46.0
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.7e-31 139.8 188 47.9
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 3.0e-31 139.0 187 44.9
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 3.9e-31 138.7 186 47.8
Gohir.A11G310000 Gossypium hirsutum HOM05D003395 ORTHO05D004087 4.0e-28 128.6 107 59.8
SHI40121 Sapria himalayana HOM05D003395 ORTHO05D004087 5.2e-28 128.3 76 85.5
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 1.2e-27 127.1 187 40.1
SHI32287 Sapria himalayana HOM05D003395 ORTHO05D004087 1.5e-27 126.7 134 59.0
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 7.6e-27 124.4 113 55.8
SHI25400 Sapria himalayana HOM05D003395 ORTHO05D004087 1.1e-25 120.6 162 48.8
SHI34459 Sapria himalayana HOM05D003395 ORTHO05D004087 1.4e-25 120.2 154 50.6
SHI27325 Sapria himalayana HOM05D003395 ORTHO05D004087 9.3e-25 117.5 164 49.4
SHI20623 Sapria himalayana HOM05D003395 ORTHO05D004087 1.7e-23 113.2 170 45.3
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 5.1e-23 111.7 181 40.9
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 2.5e-22 109.4 158 44.3
SHI37781 Sapria himalayana HOM05D003395 ORTHO05D004087 4.3e-22 108.6 153 50.3
CDE11G0065 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 7.3e-22 107.8 129 48.1
SHI44367 Sapria himalayana HOM05D003395 ORTHO05D004087 9.6e-22 107.5 154 47.4
SHI45533 Sapria himalayana HOM05D003395 ORTHO05D004087 4.8e-21 105.1 154 46.8
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 1.1e-20 104.0 176 38.6
SHI33206 Sapria himalayana HOM05D003395 ORTHO05D004087 1.8e-20 103.2 86 70.9
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 6.9e-20 101.3 175 37.1
SHI51863 Sapria himalayana HOM05D003395 ORTHO05D004087 4.4e-19 98.6 109 58.7
AL4G39910 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 4.9e-18 95.1 142 42.3
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 6.4e-18 94.7 178 37.6
SHI43596 Sapria himalayana HOM05D003395 ORTHO05D004087 8.4e-18 94.4 109 57.8
SHI28043 Sapria himalayana HOM05D003395 ORTHO05D004087 1.9e-17 93.2 113 50.4
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 1.0e-15 87.4 127 43.3
Lj3g0025487 Lotus japonicus HOM05D003395 ORTHO05D004087 2.8e-13 79.3 111 45.9
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 1.4e-12 77.0 177 32.2
SHI40120 Sapria himalayana HOM05D003395 ORTHO05D004087 1.2e-11 73.9 38 94.7
SHI37552 Sapria himalayana HOM05D003395 ORTHO05D004087 7.6e-11 71.2 40 95.0
SHI48926 Sapria himalayana HOM05D003395 ORTHO05D004087 7.6e-11 71.2 40 95.0
SHI32634 Sapria himalayana HOM05D003395 ORTHO05D004087 5.5e-09 65.1 38 84.2
AagrBONN_evm.TU.Sc2ySwM_117.1001 Anthoceros agrestis HOM05D003395 ORTHO05D004087 9.3e-09 64.3 123 34.1
SHI17502 Sapria himalayana HOM05D003395 ORTHO05D004087 2.1e-08 63.2 40 85.0
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 1.1e-06 57.4 40 72.5
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.9e-06 56.6 41 70.7
CDE11G0192 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 7.4e-06 54.7 40 70.0


User provided reference genes

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