Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 1.1e-217 759.6 377 100.0
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 9.3e-103 377.9 357 57.7
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 3.0e-101 372.9 364 56.6
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 1.9e-100 370.2 350 58.0
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 2.8e-99 366.3 358 57.5
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 3.7e-99 365.9 365 55.9
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 8.1e-99 364.8 351 56.7
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 1.5e-97 360.5 340 57.9
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 5.8e-97 358.6 340 57.4
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 4.9e-96 355.5 346 57.2
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 1.9e-95 353.6 312 60.6
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 4.2e-95 352.4 340 56.8
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 7.1e-95 351.7 347 56.2
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 9.3e-95 351.3 339 57.2
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 9.3e-95 351.3 341 57.5
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 9.3e-95 351.3 341 57.5
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 1.6e-94 350.5 332 56.9
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 8.7e-93 344.7 316 57.3
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.5e-92 344.0 356 53.9
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 4.3e-92 342.4 346 53.5
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 1.3e-91 340.9 346 54.0
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.3e-91 340.9 362 51.4
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 1.6e-91 340.5 348 54.0
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 2.8e-91 339.7 344 54.1
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 2.8e-91 339.7 351 53.6
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 4.8e-91 339.0 371 53.4
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 4.8e-91 339.0 356 53.1
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 6.3e-91 338.6 337 54.9
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 6.3e-91 338.6 371 52.3
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 8.2e-91 338.2 350 54.0
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 3.1e-90 336.3 332 56.6
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 4.1e-90 335.9 335 55.8
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 5.3e-90 335.5 318 56.3
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 5.3e-90 335.5 342 55.3
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 9.0e-90 334.7 320 56.2
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.2e-89 334.3 386 51.6
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.2e-89 334.3 387 50.9
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 1.2e-89 334.3 311 57.6
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 2.0e-89 333.6 335 56.1
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 2.0e-89 333.6 354 53.1
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 2.6e-89 333.2 364 52.5
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 2.6e-89 333.2 362 51.7
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 4.5e-89 332.4 325 55.1
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 4.5e-89 332.4 364 51.6
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 7.6e-89 331.6 315 55.6
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 1.0e-88 331.3 366 51.4
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 1.7e-88 330.5 325 56.3
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 2.9e-88 329.7 362 51.4
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 3.8e-88 329.3 366 52.5
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 5.0e-88 328.9 364 52.2
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 5.0e-88 328.9 340 54.1
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 6.5e-88 328.6 364 51.1
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 6.5e-88 328.6 358 52.5
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 8.5e-88 328.2 353 55.0
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 1.9e-87 327.0 402 47.8
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 1.9e-87 327.0 363 51.8
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 2.5e-87 326.6 367 52.6
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 3.2e-87 326.2 365 51.8
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 5.5e-87 325.5 365 51.5
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 5.5e-87 325.5 369 50.9
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 7.2e-87 325.1 334 53.0
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 7.2e-87 325.1 359 52.1
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 7.2e-87 325.1 368 51.1
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 9.3e-87 324.7 347 51.9
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 9.3e-87 324.7 347 51.9
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 9.3e-87 324.7 360 50.6
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.2e-86 324.3 346 53.2
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 1.6e-86 323.9 360 50.3
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 2.7e-86 323.2 360 50.3
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 2.7e-86 323.2 362 50.6
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.7e-86 323.2 283 60.4
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 4.6e-86 322.4 337 53.7
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 4.6e-86 322.4 319 56.1
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 6.1e-86 322.0 283 60.1
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.1e-86 322.0 283 59.4
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 1.0e-85 321.2 338 53.3
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 2.3e-85 320.1 352 52.0
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.1e-85 318.9 283 59.7
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 5.1e-85 318.9 359 51.3
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 8.7e-85 318.2 359 51.5
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.9e-84 317.0 283 59.4
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 2.5e-84 316.6 363 50.1
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 4.3e-84 315.8 372 51.1
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 7.4e-84 315.1 360 49.7
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 7.4e-84 315.1 348 51.7
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.3e-83 314.3 355 52.7
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 4.8e-83 312.4 349 52.7
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.4e-82 310.8 355 51.3
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 1.8e-82 310.5 348 51.7
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 1.8e-82 310.5 343 52.8
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 2.2e-80 303.5 317 56.2
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 5.0e-80 302.4 348 51.1
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 1.1e-79 301.2 333 52.0
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 1.2e-78 297.7 363 49.6
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 1.6e-78 297.4 230 67.4
Cpa.g.sc192.16 Carica papaya HOM05D003481 ORTHO05D004001 2.3e-77 293.5 284 58.1
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 5.1e-77 292.4 276 56.5
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 4.8e-75 285.8 332 50.6
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 4.8e-75 285.8 292 53.8
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 6.3e-75 285.4 287 55.1
Haze_05983 Corylus avellana HOM05D003481 ORTHO05D004001 1.8e-74 283.9 288 55.2
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 6.9e-74 282.0 287 54.4
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 7.7e-73 278.5 464 40.1
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 4.7e-70 269.2 332 47.0
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 5.7e-68 262.3 319 48.6
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 3.7e-67 259.6 272 52.9
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 4.8e-67 259.2 273 52.7
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 1.4e-66 257.7 307 47.2
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 2.6e-65 253.4 301 46.5
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 2.9e-64 250.0 223 61.9
Actinidia29310 Actinidia chinensis HOM05D003481 ORTHO05D004001 6.5e-64 248.8 283 52.7
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 6.5e-64 248.8 311 45.0
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 8.5e-64 248.4 221 62.0
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 1.1e-63 248.1 311 46.9
TAR624G0988 Trochodendron aralioides HOM05D003481 ORTHO05D004001 3.0e-61 240.0 276 51.4
ATR1132G122 Amborella trichopoda HOM05D003481 ORTHO05D004001 4.4e-60 236.1 273 49.1
Peaxi162Scf00267g00085 Petunia axillaris HOM05D003481 ORTHO05D004001 1.3e-59 234.6 260 51.9
Oeu051246.1 Olea europaea HOM05D003481 ORTHO05D004001 5.3e-58 229.2 244 52.0
Solyc02g030100.4 Solanum lycopersicum HOM05D003481 ORTHO05D004001 7.0e-58 228.8 261 51.3
CSS0036853 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 3.5e-57 226.5 259 51.4
SEGI_08137 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 4.2e-55 219.5 243 50.6
Nitab4.5_0001298g0050 Nicotiana tabacum HOM05D003481 ORTHO05D004001 8.0e-54 215.3 260 49.2
Nitab4.5_0003773g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.0e-53 213.4 169 65.7
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 3.0e-53 213.4 233 52.4
Nitab4.5_0000378g0090 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.7e-51 207.6 225 52.9
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 8.3e-51 205.3 231 48.1
BcaNung07304 Brassica carinata HOM05D003481 ORTHO05D004001 5.6e-23 112.8 167 43.7
FAN27G0233 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.8e-22 110.5 137 44.5
FAN18G3112 Fragaria x ananassa HOM05D003481 ORTHO05D004001 8.9e-21 105.5 90 55.6
FvH4_4g15480 Fragaria vesca HOM05D003481 ORTHO05D004001 1.2e-20 105.1 90 54.4
FvH4_5g17630 Fragaria vesca HOM05D003481 ORTHO05D004001 1.2e-20 105.1 90 54.4
FAN10G3643 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.3e-19 101.7 90 53.3
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 1.1e-18 98.6 85 60.0
FvH4_4g15181 Fragaria vesca HOM05D003481 ORTHO05D004001 1.9e-18 97.8 90 53.3
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 7.8e-17 92.4 84 57.1
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 1.0e-16 92.0 194 32.0
Actinidia33646 Actinidia chinensis HOM05D003481 ORTHO05D004001 8.6e-16 89.0 86 54.7
FAN11G1212 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.5e-15 87.4 90 50.0
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 9.5e-15 85.5 124 41.9
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 3.6e-14 83.6 87 52.9
Actinidia29309 Actinidia chinensis HOM05D003481 ORTHO05D004001 8.1e-14 82.4 87 52.9
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.8e-13 81.3 87 50.6
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 2.6e-12 77.4 207 30.0
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.4e-10 71.6 110 41.8
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.0e-08 65.5 47 70.2
ECA233G3654 Erigeron canadensis HOM05D000392 ORTHO05D002065 1.1e-07 62.0 39 66.7
SHI14665 Sapria himalayana HOM05D000392 ORTHO05D000610 1.1e-07 62.0 37 75.7
SHI28157 Sapria himalayana HOM05D000392 ORTHO05D000610 1.1e-07 62.0 39 71.8
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 1.9e-07 61.2 192 27.1
ECA234G2153 Erigeron canadensis HOM05D000392 ORTHO05D000610 1.9e-07 61.2 39 66.7
ECA236G3702 Erigeron canadensis HOM05D000392 ORTHO05D000610 1.9e-07 61.2 39 66.7
SHI15573 Sapria himalayana HOM05D000392 ORTHO05D000610 1.9e-07 61.2 39 71.8
ECA248G3881 Erigeron canadensis HOM05D000392 ORTHO05D000610 2.5e-07 60.8 39 66.7
SHI05554 Sapria himalayana HOM05D000392 ORTHO05D000610 3.3e-07 60.5 39 69.2
SHI18893 Sapria himalayana HOM05D000392 ORTHO05D000610 4.3e-07 60.1 39 69.2
SHI19354 Sapria himalayana HOM05D000392 ORTHO05D000610 4.3e-07 60.1 41 65.9
ECA232G1868 Erigeron canadensis HOM05D000002 ORTHO05D002065 7.3e-07 59.3 39 64.1
SHI06944 Sapria himalayana HOM05D000392 ORTHO05D000610 7.3e-07 59.3 47 63.8
ECA240G2016 Erigeron canadensis HOM05D000392 ORTHO05D000610 9.6e-07 58.9 39 64.1
SHI07191 Sapria himalayana HOM05D000392 ORTHO05D000610 1.2e-06 58.5 39 66.7
SHI21477 Sapria himalayana HOM05D000392 ORTHO05D000610 1.2e-06 58.5 39 71.8
SHI18416 Sapria himalayana HOM05D000392 ORTHO05D000610 1.6e-06 58.2 39 69.2
SHI28134 Sapria himalayana HOM05D000392 ORTHO05D000610 1.6e-06 58.2 39 69.2
SHI03610 Sapria himalayana HOM05D000392 ORTHO05D000610 2.1e-06 57.8 39 66.7
SHI04316 Sapria himalayana HOM05D000392 ORTHO05D000610 2.1e-06 57.8 39 64.1
SHI38904 Sapria himalayana HOM05D000392 ORTHO05D000610 2.1e-06 57.8 42 59.5
SHI11557 Sapria himalayana HOM05D000392 ORTHO05D000610 2.8e-06 57.4 39 66.7
SHI15379 Sapria himalayana HOM05D000392 ORTHO05D000610 2.8e-06 57.4 35 74.3
SHI14676 Sapria himalayana HOM05D000392 ORTHO05D000610 3.6e-06 57.0 39 66.7
SHI05136 Sapria himalayana HOM05D000004 ORTHO05D000002 4.7e-06 56.6 39 61.5
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 4.7e-06 56.6 46 56.5
SHI02234 Sapria himalayana HOM05D000392 ORTHO05D000610 6.2e-06 56.2 39 64.1
SHI17282 Sapria himalayana HOM05D000392 ORTHO05D000610 6.2e-06 56.2 39 64.1
CiPaw.15G077200 Carya illinoinensis HOM05D000392 ORTHO05D000610 8.1e-06 55.8 39 61.5
SHI27754 Sapria himalayana HOM05D000392 ORTHO05D000610 8.1e-06 55.8 42 66.7


User provided reference genes

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