Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31589 Sapria himalayana HOM05D003481 ORTHO05D004001 5.9e-115 417.5 210 100.0
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 1.7e-58 229.9 229 57.2
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 3.0e-58 229.2 210 59.0
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 8.7e-58 227.6 232 56.0
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 3.3e-57 225.7 219 57.1
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 5.6e-57 224.9 207 58.5
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 7.3e-57 224.6 231 52.4
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 7.3e-57 224.6 236 54.2
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 2.1e-56 223.0 231 52.4
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 2.1e-56 223.0 230 54.3
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.6e-56 222.2 209 56.0
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 3.6e-56 222.2 234 54.3
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 4.8e-56 221.9 228 54.8
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 8.1e-56 221.1 219 56.2
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 8.1e-56 221.1 233 52.8
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 1.4e-55 220.3 233 53.2
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.4e-55 220.3 232 53.9
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.8e-55 219.9 216 56.0
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 1.8e-55 219.9 216 56.9
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 4.0e-55 218.8 232 54.3
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 5.3e-55 218.4 216 56.9
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 6.9e-55 218.0 227 54.2
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 1.2e-54 217.2 212 56.6
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.5e-54 216.9 225 56.0
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 1.5e-54 216.9 231 54.1
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 3.4e-54 215.7 209 54.5
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 3.4e-54 215.7 225 55.1
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 3.4e-54 215.7 232 51.7
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 4.4e-54 215.3 203 58.1
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 4.4e-54 215.3 231 52.8
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 5.8e-54 214.9 217 54.8
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 1.3e-53 213.8 231 51.9
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 1.3e-53 213.8 217 55.8
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 1.3e-53 213.8 231 52.4
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 1.7e-53 213.4 225 52.9
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 1.7e-53 213.4 215 55.3
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 2.9e-53 212.6 231 51.5
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 3.8e-53 212.2 231 52.8
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 3.8e-53 212.2 231 51.9
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 4.9e-53 211.8 203 55.2
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 6.4e-53 211.5 223 51.6
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 6.4e-53 211.5 208 57.2
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 6.4e-53 211.5 207 52.2
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 8.4e-53 211.1 208 57.2
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.4e-52 210.3 207 53.6
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 1.4e-52 210.3 231 50.2
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.4e-52 210.3 232 53.0
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 1.9e-52 209.9 209 53.1
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 2.4e-52 209.5 217 51.6
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 2.4e-52 209.5 213 55.9
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 2.4e-52 209.5 209 53.1
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 4.2e-52 208.8 225 49.3
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 7.1e-52 208.0 222 53.6
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 7.1e-52 208.0 207 55.1
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 7.1e-52 208.0 224 52.7
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 7.1e-52 208.0 234 52.6
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 9.3e-52 207.6 204 54.9
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 9.3e-52 207.6 204 54.9
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.6e-51 206.8 197 52.8
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 1.6e-51 206.8 225 52.9
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 2.1e-51 206.5 234 51.3
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 2.7e-51 206.1 208 52.4
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 3.5e-51 205.7 203 54.7
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 6.0e-51 204.9 227 51.1
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 7.8e-51 204.5 232 50.4
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 7.8e-51 204.5 220 53.2
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 1.0e-50 204.1 227 52.0
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 1.3e-50 203.8 229 53.7
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.7e-50 203.4 228 51.3
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 1.7e-50 203.4 230 49.1
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.3e-50 203.0 230 49.1
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 3.9e-50 202.2 216 51.4
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 3.9e-50 202.2 223 52.5
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 5.1e-50 201.8 207 53.1
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 8.7e-50 201.1 218 51.8
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 1.9e-49 199.9 229 50.7
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.9e-49 199.9 227 47.6
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.9e-49 199.9 197 53.8
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 4.3e-49 198.7 224 50.4
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 4.3e-49 198.7 222 52.7
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 7.3e-49 198.0 226 46.0
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 9.6e-49 197.6 207 52.7
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.3e-48 197.2 197 52.8
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.6e-48 196.8 208 52.9
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 2.8e-48 196.1 205 51.2
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 3.6e-48 195.7 229 50.2
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 4.8e-48 195.3 206 51.5
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 8.1e-48 194.5 210 51.4
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.4e-47 193.7 201 53.2
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 9.0e-47 191.0 219 51.1
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 1.2e-46 190.7 224 48.2
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 3.4e-46 189.1 219 49.8
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 3.4e-46 189.1 219 49.8
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 3.4e-46 189.1 219 49.8
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 5.8e-46 188.3 221 47.5
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 5.8e-46 188.3 224 47.3
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 9.9e-46 187.6 218 49.5
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 8.4e-45 184.5 219 47.5
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 1.1e-44 184.1 228 47.4
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 1.1e-44 184.1 228 47.4
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 1.4e-44 183.7 219 47.5
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 1.9e-44 183.3 224 46.9
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 5.4e-44 181.8 115 74.8
CSS0035493 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 5.4e-44 181.8 116 73.3
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 5.4e-44 181.8 115 73.0
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 5.4e-44 181.8 124 69.4
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 2.7e-43 179.5 226 47.8
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 1.3e-42 177.2 115 72.2
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 1.3e-42 177.2 220 47.3
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 3.0e-42 176.0 115 72.2
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.9e-42 175.6 121 71.9
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 6.7e-42 174.9 119 68.1
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 8.7e-42 174.5 108 78.7
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 8.7e-42 174.5 108 78.7
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 1.5e-41 173.7 115 71.3
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 9.6e-41 171.0 217 46.1
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 6.2e-40 168.3 119 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.8e-39 166.8 116 68.1
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.3e-34 150.6 116 62.9
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 5.1e-34 148.7 205 45.9
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 6.7e-34 148.3 214 42.1
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 3.3e-33 146.0 227 44.5
Sabra16G0299600 Salix brachista HOM05D003481 ORTHO05D004001 2.5e-28 129.8 175 46.3
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 3.2e-28 129.4 83 72.3
Aqoxy3G00998 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 3.7e-24 115.9 131 48.9
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 5.3e-23 112.1 163 43.6
Lsat_1_v5_gn_3_92020 Lactuca sativa HOM05D002302 ORTHO05D002728 2.5e-17 93.2 105 48.6
RcHm_v2.0_Chr7g0240301 Rosa chinensis HOM05D003481 ORTHO05D004001 1.5e-14 84.0 231 30.7
Oeu001605.1 Olea europaea HOM05D003481 ORTHO05D004001 3.4e-14 82.8 129 39.5
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 4.5e-14 82.4 131 39.7
arahy.Tifrunner.gnm1.ann1.SFPI36 Arachis hypogaea HOM05D003481 ORTHO05D004001 7.7e-14 81.6 52 71.2
arahy.Tifrunner.gnm1.ann1.16LSI5 Arachis hypogaea HOM05D003481 ORTHO05D004001 1.9e-12 77.0 116 39.7
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 7.2e-12 75.1 124 37.1
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 7.9e-11 71.6 140 35.7
Lsat_1_v5_gn_0_25080 Lactuca sativa HOM05D003481 ORTHO05D004001 9.7e-09 64.7 158 32.9


User provided reference genes

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