Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI31572 Sapria himalayana HOM05D001397 ORTHO05D001300 1.8e-66 255.8 127 100.0
SHI15034 Sapria himalayana HOM05D028598 ORTHO05D001300 1.3e-37 159.8 105 77.1
SHI07299 Sapria himalayana HOM05D028598 ORTHO05D364848 1.5e-20 103.2 87 66.7
SHI33866 Sapria himalayana HOM05D001397 ORTHO05D001300 1.9e-20 102.8 78 67.9
SHI35735 Sapria himalayana HOM05D001397 ORTHO05D001300 5.7e-20 101.3 88 61.4
SHI00160 Sapria himalayana HOM05D001397 ORTHO05D001300 7.4e-20 100.9 104 59.6
SHI34395 Sapria himalayana HOM05D001397 ORTHO05D001300 9.7e-20 100.5 77 66.2
SHI37428 Sapria himalayana HOM05D001397 ORTHO05D001300 4.8e-19 98.2 88 60.2
Manes.03G201800 Manihot esculenta HOM05D001397 ORTHO05D001300 1.0e-16 90.5 174 38.5
Potri.010G141100 Populus trichocarpa HOM05D001397 ORTHO05D001300 2.9e-16 89.0 165 40.0
Sabra10G0109100 Salix brachista HOM05D001397 ORTHO05D001300 4.2e-15 85.1 165 40.0
TWI53G0938 Tripterygium wilfordii HOM05D001397 ORTHO05D001300 7.2e-15 84.3 98 48.0
Ciclev10004794m.g Citrus clementina HOM05D001397 ORTHO05D001300 6.1e-14 81.3 98 46.9
Dinv44315 Davidia involucrata HOM05D001397 ORTHO05D001300 6.1e-14 81.3 112 43.8
Manes.15G006500 Manihot esculenta HOM05D001397 ORTHO05D001300 7.9e-14 80.9 168 38.7
QL06p011440 Quercus lobata HOM05D001397 ORTHO05D001300 1.0e-13 80.5 97 47.4
TWI73G0765 Tripterygium wilfordii HOM05D001397 ORTHO05D001300 1.8e-13 79.7 98 45.9
Gohir.D10G174300 Gossypium hirsutum HOM05D001397 ORTHO05D001300 2.3e-13 79.3 168 35.7
GSVIVG01035040001 Vitis vinifera HOM05D001397 ORTHO05D001300 2.3e-13 79.3 95 48.4
FvH4_4g19320 Fragaria vesca HOM05D001397 ORTHO05D001300 3.0e-13 79.0 167 34.1
FAN12G1942 Fragaria x ananassa HOM05D001397 ORTHO05D001300 3.0e-13 79.0 167 34.1
Dinv02078 Davidia involucrata HOM05D001397 ORTHO05D001300 5.1e-13 78.2 96 46.9
Eucgr.H04029 Eucalyptus grandis HOM05D001397 ORTHO05D001300 5.1e-13 78.2 98 44.9
FAN07G0820 Fragaria x ananassa HOM05D001397 ORTHO05D001300 6.7e-13 77.8 98 43.9
Gorai.011G195000 Gossypium raimondii HOM05D001397 ORTHO05D001300 1.1e-12 77.0 168 35.1
RcHm_v2.0_Chr4g0424341 Rosa chinensis HOM05D001397 ORTHO05D001300 1.1e-12 77.0 171 33.9
Atru.chr4.2963 Acer truncatum HOM05D001397 ORTHO05D001300 1.5e-12 76.6 175 33.7
FAN12G0297 Fragaria x ananassa HOM05D001397 ORTHO05D001300 1.9e-12 76.3 157 33.8
TAR362G0524 Trochodendron aralioides HOM05D001397 ORTHO05D001300 2.5e-12 75.9 165 36.4
CSS0046459 Camellia sinensis var. sinensis HOM05D001397 ORTHO05D001300 7.4e-12 74.3 96 44.8
Gohir.A09G064600 Gossypium hirsutum HOM05D001397 ORTHO05D001300 7.4e-12 74.3 177 35.0
Thecc.04G295800 Theobroma cacao HOM05D001397 ORTHO05D001300 7.4e-12 74.3 168 35.7
MELO3C021283.2 Cucumis melo HOM05D001397 ORTHO05D001300 9.7e-12 73.9 98 42.9
Gohir.D09G063400 Gossypium hirsutum HOM05D001397 ORTHO05D001300 9.7e-12 73.9 163 35.6
arahy.Tifrunner.gnm1.ann1.7GLL8J Arachis hypogaea HOM05D001397 ORTHO05D001300 1.3e-11 73.6 86 47.7
arahy.Tifrunner.gnm1.ann1.H5PABG Arachis hypogaea HOM05D001397 ORTHO05D001300 1.3e-11 73.6 86 47.7
Duzib052G0940 Durio zibethinus HOM05D001397 ORTHO05D001300 1.3e-11 73.6 98 43.9
Gorai.006G078500 Gossypium raimondii HOM05D001397 ORTHO05D001300 1.3e-11 73.6 162 35.2
Actinidia40355 Actinidia chinensis HOM05D001397 ORTHO05D001300 1.7e-11 73.2 98 42.9
Duzib151G1064 Durio zibethinus HOM05D001397 ORTHO05D001300 2.2e-11 72.8 141 37.6
Migut.G00100 Erythranthe guttata HOM05D001397 ORTHO05D001300 2.2e-11 72.8 144 36.8
Actinidia15586 Actinidia chinensis HOM05D001397 ORTHO05D001300 2.8e-11 72.4 84 48.8
Migut.G00102 Erythranthe guttata HOM05D001397 ORTHO05D001300 2.8e-11 72.4 144 36.8
ClCG06G004740 Citrullus lanatus HOM05D001397 ORTHO05D001300 3.7e-11 72.0 145 36.6
Hma1.2p1_0399F.1_g143980 Hydrangea macrophylla HOM05D001397 ORTHO05D001300 3.7e-11 72.0 130 36.2
Aqoxy2G02798 Aquilegia oxysepala HOM05D001397 ORTHO05D001300 4.8e-11 71.6 84 47.6
Cpa.g.sc9.94 Carica papaya HOM05D001397 ORTHO05D001300 4.8e-11 71.6 98 41.8
CiPaw.02G076600 Carya illinoinensis HOM05D001397 ORTHO05D001300 4.8e-11 71.6 163 34.4
MD13G1157700 Malus domestica HOM05D001397 ORTHO05D001300 6.3e-11 71.2 174 32.2
CDE11G1190 Ceratophyllum demersum HOM05D001397 ORTHO05D001300 8.2e-11 70.9 96 42.7
Thhalv10025009m.g Eutrema salsugineum HOM05D001397 ORTHO05D001300 1.1e-10 70.5 98 39.8
CiPaw.01G141800 Carya illinoinensis HOM05D001397 ORTHO05D001300 1.4e-10 70.1 96 42.7
Sp7g14630 Schrenkiella parvula HOM05D001397 ORTHO05D001300 1.4e-10 70.1 98 39.8
AL7G39000 Arabidopsis lyrata HOM05D001397 ORTHO05D001300 1.8e-10 69.7 98 39.8
CsaV3_6G022530 Cucumis sativus L. HOM05D001397 ORTHO05D001300 1.8e-10 69.7 98 40.8
Nn3g21641 Nelumbo nucifera HOM05D001397 ORTHO05D001300 1.8e-10 69.7 96 39.6
Peaxi162Scf00065g00324 Petunia axillaris HOM05D001397 ORTHO05D001300 1.8e-10 69.7 96 42.7
CDE05G0898 Ceratophyllum demersum HOM05D001397 ORTHO05D001300 2.4e-10 69.3 90 42.2
Cc03_g01130 Coffea canephora HOM05D001397 ORTHO05D001300 2.4e-10 69.3 79 48.1
AT4G16144 Arabidopsis thaliana HOM05D001397 ORTHO05D001300 3.1e-10 68.9 86 44.2
Carub.0007s2544 Capsella rubella HOM05D001397 ORTHO05D001300 3.1e-10 68.9 155 34.8
SHI48680 Sapria himalayana HOM05D001397 ORTHO05D001300 3.1e-10 68.9 36 88.9
Sed0012111 Sechium edule HOM05D001397 ORTHO05D001300 3.1e-10 68.9 98 40.8
Rhsim04G0232600 Rhododendron simsii HOM05D001397 ORTHO05D001300 4.1e-10 68.6 96 39.6
AUR62042949 Chenopodium quinoa HOM05D001397 ORTHO05D001300 5.3e-10 68.2 96 38.5
AUR62043576 Chenopodium quinoa HOM05D001397 ORTHO05D001300 5.3e-10 68.2 96 38.5
Nn4g25646 Nelumbo nucifera HOM05D001397 ORTHO05D001300 5.3e-10 68.2 172 33.1
SalBow8G1738 Salvia bowleyana HOM05D001397 ORTHO05D001300 5.3e-10 68.2 127 36.2
SalBow8G3812 Salvia bowleyana HOM05D001397 ORTHO05D001300 5.3e-10 68.2 127 36.2
Sc13g0006310 Simmondsia chinensis HOM05D001397 ORTHO05D001300 5.3e-10 68.2 96 40.6
TPR.G16832 Trifolium pratense HOM05D001397 ORTHO05D001300 5.3e-10 68.2 98 41.8
BcaNung00222 Brassica carinata HOM05D001397 ORTHO05D001300 6.9e-10 67.8 98 37.8
BolC1t02624H Brassica oleracea HOM05D001397 ORTHO05D001300 6.9e-10 67.8 98 37.8
BcaC09g50307 Brassica carinata HOM05D001397 ORTHO05D001300 9.1e-10 67.4 98 37.8
C01p26800 Brassica napus HOM05D001397 ORTHO05D001300 9.1e-10 67.4 98 37.8
THA.LOC104821797 Tarenaya hassleriana HOM05D001397 ORTHO05D001300 9.1e-10 67.4 98 39.8
CAN.G197.19 Capsicum annuum HOM05D001397 ORTHO05D001300 1.2e-09 67.0 100 39.0
MBI18_g34963_MAGBIO Magnolia biondii HOM05D001397 ORTHO05D001300 1.2e-09 67.0 135 35.6
Psat4g023200 Pisum sativum HOM05D001397 ORTHO05D001300 1.2e-09 67.0 98 40.8
Sopen01g026500 Solanum pennellii HOM05D001397 ORTHO05D001300 1.2e-09 67.0 99 40.4
Ah.04g154890 Amaranthus hybridus HOM05D001397 ORTHO05D001300 2.0e-09 66.2 153 33.3
BcaC06g33463 Brassica carinata HOM05D001397 ORTHO05D001300 2.0e-09 66.2 97 38.1
A03p49610 Brassica napus HOM05D000768 ORTHO05D000665 2.0e-09 66.2 97 38.1
C07p47670 Brassica napus HOM05D000768 ORTHO05D000665 2.0e-09 66.2 97 38.1
BolC7t45292H Brassica oleracea HOM05D001397 ORTHO05D001300 2.0e-09 66.2 97 38.1
MD16G1158700 Malus domestica HOM05D001397 ORTHO05D001300 2.0e-09 66.2 174 32.8
vmacro08073 Vaccinium macrocarpon HOM05D001397 ORTHO05D001300 2.0e-09 66.2 96 39.6
Ca_21458_v3 Cicer arietinum L. HOM05D001397 ORTHO05D001300 2.6e-09 65.9 98 40.8
HanXRQChr17g0552091 Helianthus annuus HOM05D001397 ORTHO05D001300 2.6e-09 65.9 152 32.2
VMungo1215G1129 Vigna mungo HOM05D001397 ORTHO05D001300 2.6e-09 65.9 98 39.8
EL10Ac3g04923 Beta vulgaris HOM05D001397 ORTHO05D001300 3.4e-09 65.5 97 37.1
Gohir.A10G168200 Gossypium hirsutum HOM05D001397 ORTHO05D001300 3.4e-09 65.5 165 32.1
Phvul.003G111000 Phaseolus vulgaris HOM05D001397 ORTHO05D001300 3.4e-09 65.5 98 40.8
Hund03098 Selenicereus undatus HOM05D001397 ORTHO05D001300 3.4e-09 65.5 127 33.9
BcaC06g32988 Brassica carinata HOM05D001397 ORTHO05D001300 4.5e-09 65.1 137 35.0
HPP92_017240 Vanilla planifolia HOM05D001397 ORTHO05D001300 4.5e-09 65.1 84 41.7
HPP92_027568 Vanilla planifolia HOM05D001397 ORTHO05D001300 4.5e-09 65.1 84 41.7
CARHR222450 Cardamine hirsuta HOM05D001397 ORTHO05D001300 7.7e-09 64.3 134 34.3
BraA03t14059Z Brassica rapa HOM05D001397 ORTHO05D001300 1.0e-08 63.9 97 37.1
AUR62016147 Chenopodium quinoa HOM05D001397 ORTHO05D001300 1.0e-08 63.9 96 36.5
Lj4g0024053 Lotus japonicus HOM05D001397 ORTHO05D001300 1.3e-08 63.5 125 35.2
Lalb_Chr12g0200971 Lupinus albus HOM05D001397 ORTHO05D001300 1.3e-08 63.5 98 38.8
CDE02G0485 Ceratophyllum demersum HOM05D001397 ORTHO05D001300 1.7e-08 63.2 141 33.3
Glyma.07G242500 Glycine max HOM05D001397 ORTHO05D001300 1.7e-08 63.2 98 38.8
PSO761G0705 Papaver somniferum HOM05D001397 ORTHO05D001300 2.2e-08 62.8 96 38.5
PGSC0003DMG400007555 Solanum tuberosum HOM05D001397 ORTHO05D001300 2.2e-08 62.8 91 41.8
MBI16_g05564_MAGBIO Magnolia biondii HOM05D001397 ORTHO05D001300 3.8e-08 62.0 84 45.2
PSO210G5422 Papaver somniferum HOM05D001397 ORTHO05D001300 3.8e-08 62.0 96 38.5
unitig_32.g10636 Utricularia gibba HOM05D001397 ORTHO05D001300 3.8e-08 62.0 141 33.3
Glyma.17G031700 Glycine max HOM05D001397 ORTHO05D001300 5.0e-08 61.6 86 43.0
Lsat_1_v5_gn_1_44040 Lactuca sativa HOM05D001397 ORTHO05D001300 5.0e-08 61.6 113 35.4
Aa31LG10G6000 Aethionema arabicum HOM05D001397 ORTHO05D001300 6.5e-08 61.2 80 42.5
Medtr4g121470 Medicago truncatula HOM05D001397 ORTHO05D001300 6.5e-08 61.2 98 37.8
Pp3c6_16700 Physcomitrium patens HOM05D001397 ORTHO05D001300 6.5e-08 61.2 117 34.2
Prupe.1G125200 Prunus persica HOM05D001397 ORTHO05D001300 1.1e-07 60.5 79 43.0
ATR1125G122 Amborella trichopoda HOM05D001397 ORTHO05D001300 1.4e-07 60.1 90 41.1
ECA246G1757 Erigeron canadensis HOM05D001397 ORTHO05D001300 1.4e-07 60.1 146 30.8
Nitab4.5_0005333g0020 Nicotiana tabacum HOM05D001397 ORTHO05D001300 3.2e-07 58.9 111 34.2
MBI18_g28464_MAGBIO Magnolia biondii HOM05D001397 ORTHO05D001300 5.5e-07 58.2 55 54.5
Hma1.2p1_0013F.1_g008900 Hydrangea macrophylla HOM05D001397 ORTHO05D001300 7.2e-07 57.8 51 54.9
TAR374G1228 Trochodendron aralioides HOM05D001397 ORTHO05D001300 9.4e-07 57.4 105 36.2
Duzib205G0051 Durio zibethinus HOM05D001397 ORTHO05D001300 1.2e-06 57.0 85 42.4
SEGI_01432 Sequoiadendron giganteum HOM05D001397 ORTHO05D001300 1.2e-06 57.0 118 33.9
SEGI_09744 Sequoiadendron giganteum HOM05D001397 ORTHO05D001300 1.2e-06 57.0 118 33.9
CAN.G1634.2 Capsicum annuum HOM05D002547 ORTHO05D002649 1.6e-06 56.6 96 35.4
Gohir.A11G005200 Gossypium hirsutum HOM05D001397 ORTHO05D001300 1.6e-06 56.6 119 34.5
Gohir.D11G004500 Gossypium hirsutum HOM05D001397 ORTHO05D001300 1.6e-06 56.6 119 34.5
Gorai.007G005500 Gossypium raimondii HOM05D001397 ORTHO05D001300 1.6e-06 56.6 119 34.5
SHI34510 Sapria himalayana HOM05D001397 ORTHO05D001300 1.6e-06 56.6 64 48.4
Gohir.D09G172300 Gossypium hirsutum HOM05D001397 ORTHO05D001300 2.1e-06 56.2 118 36.4
Gorai.006G194200 Gossypium raimondii HOM05D001397 ORTHO05D001300 2.1e-06 56.2 118 36.4
Gohir.A09G176700 Gossypium hirsutum HOM05D001397 ORTHO05D001300 2.7e-06 55.8 129 33.3
Lj3A827G68 Lonicera japonica HOM05D001397 ORTHO05D001300 2.7e-06 55.8 66 43.9
Lalb_Chr07g0182151 Lupinus albus HOM05D001397 ORTHO05D001300 2.7e-06 55.8 106 34.9
PGR004G0959 Punica granatum HOM05D001397 ORTHO05D001300 2.7e-06 55.8 51 54.9
MD14G1227900 Malus domestica HOM05D001397 ORTHO05D001300 3.6e-06 55.5 104 33.7
Prupe.5G222900 Prunus persica HOM05D001397 ORTHO05D001300 4.7e-06 55.1 85 38.8
CAN.G1425.19 Capsicum annuum HOM05D001397 ORTHO05D001300 6.1e-06 54.7 91 36.3
DCAR_023210 Daucus carota HOM05D001397 ORTHO05D001300 6.1e-06 54.7 98 35.7
Sed0021143 Sechium edule HOM05D001397 ORTHO05D001300 6.1e-06 54.7 97 30.9
PGSC0003DMG400005643 Solanum tuberosum HOM05D001397 ORTHO05D001300 6.1e-06 54.7 82 41.5
CiPaw.15G131900 Carya illinoinensis HOM05D001397 ORTHO05D001300 7.9e-06 54.3 90 37.8
DCAR_030481 Daucus carota HOM05D001397 ORTHO05D001300 7.9e-06 54.3 91 36.3
Nn3g17890 Nelumbo nucifera HOM05D001397 ORTHO05D001300 7.9e-06 54.3 78 41.0
Nitab4.5_0000169g0060 Nicotiana tabacum HOM05D001397 ORTHO05D001300 7.9e-06 54.3 111 32.4


User provided reference genes

Program Settings