Gene: AT4G16144

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G16144
  • Transcript Identifier AT4G16144.1
  • Gene Type Coding gene
  • Location Chr4 : 9138392-9141422 : negative

Gene Family Information

  • ID HOM05D001397
  • #Genes/#Species 448/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G16144.1
  • symbol AMSH3
  • uniprot Q5PNU3

Descriptions

  • Description associated molecule with the SH3 domain of STAM 3
  • Computational description associated molecule with the SH3 domain of STAM 3 (AMSH3); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 1 (TAIR:AT1G48790.1); Has 901 Blast hits to 707 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 228; Plants - 224; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006508
IEA
GOA Databaseproteolysis
GO:0006897
IEA
GOA Databaseendocytosis
GO:0006897
IMP
Gene Ontologyendocytosis1
GO:0071108
IDA
IBA
Gene Ontologyprotein K48-linked deubiquitination1 2
GO:0015031
IEA
GOA Databaseprotein transport
GO:0070536
IEA
GOA Databaseprotein K63-linked deubiquitination
GO:0070536
IDA
IBA
Gene Ontologyprotein K63-linked deubiquitination1 2
GO:0016579
IEA
GOA Databaseprotein deubiquitination
GO:0019941
IDA
Gene Ontologymodification-dependent protein catabolic process1
GO:0000338
IDA
Gene Ontologyprotein deneddylation1
GO:0007033
IMP
Gene Ontologyvacuole organization1
GO:0016926
IDA
Gene Ontologyprotein desumoylation1
GO:0044090
IMP
Gene Ontologypositive regulation of vacuole organization1
GO:0046907
IMP
Gene Ontologyintracellular transport1
GO:0090316
IMP
Gene Ontologypositive regulation of intracellular protein transport1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008237
IEA
GOA Databasemetallopeptidase activity
GO:0008237
IEA
InterPrometallopeptidase activity
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005515
IEA
InterProprotein binding
GO:0070122
IEA
Gene Ontologyisopeptidase activity
GO:0070122
IEA
InterProisopeptidase activity
GO:0061578
IEA
Gene OntologyLys63-specific deubiquitinase activity
GO:0004843
IBA
Gene Ontologythiol-dependent deubiquitinase2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005768
IEA
GOA Databaseendosome
GO:0005768
IBA
Gene Ontologyendosome2
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IDA
Gene Ontologymembrane1
GO:0005774
IEA
GOA Databasevacuolar membrane
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm3
GO:0005770
IEA
GOA Databaselate endosome
GO:0005770
IDA
Gene Ontologylate endosome3
GO:0005773
IEA
GOA Databasevacuole
GO:0016021
IDA
Gene Ontologyintegral component of membrane1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015063 USP8 dimerisation domain
IPR000555 JAB1/MPN/MOV34 metalloenzyme domain
Mapman id Description
22.4.3.2.1 Vesicle trafficking.endocytic trafficking.ubiquitylated cargo adaptation.cargo deubiquitination.deubiquitinase (AMSH)