Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28808 Sapria himalayana HOM05D000725 ORTHO05D004053 3.7e-312 1073.5 534 100.0
Manes.10G007800 Manihot esculenta HOM05D000725 ORTHO05D004053 1.8e-104 384.0 584 39.4
Duzib114G0648 Durio zibethinus HOM05D000725 ORTHO05D004053 9.8e-98 361.7 596 38.1
Sabra10G0141000 Salix brachista HOM05D000725 ORTHO05D004053 1.4e-96 357.8 651 35.2
Cfa001267 Carpinus fangiana HOM05D000725 ORTHO05D004053 4.1e-96 356.3 587 36.6
Potri.008G073500 Populus trichocarpa HOM05D000725 ORTHO05D004053 2.7e-95 353.6 662 35.8
CiPaw.01G301800 Carya illinoinensis HOM05D000725 ORTHO05D004053 7.7e-95 352.1 587 36.1
Thecc.10G009700 Theobroma cacao HOM05D000725 ORTHO05D004053 7.7e-95 352.1 599 37.7
Sabra08G0054700 Salix brachista HOM05D000725 ORTHO05D004053 2.5e-93 347.1 670 34.3
Gohir.D06G166900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 1.2e-92 344.7 604 35.8
Haze_17278 Corylus avellana HOM05D000725 ORTHO05D004053 8.0e-92 342.0 619 34.6
Haze_17287 Corylus avellana HOM05D000725 ORTHO05D004053 8.0e-92 342.0 619 34.6
Duzib106G0872 Durio zibethinus HOM05D000725 ORTHO05D004053 1.4e-91 341.3 598 37.3
Gorai.010G194700 Gossypium raimondii HOM05D000725 ORTHO05D004053 1.4e-91 341.3 604 35.4
QL08p063892 Quercus lobata HOM05D000725 ORTHO05D004053 1.5e-90 337.8 596 36.4
Gohir.A06G160900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 4.4e-90 336.3 604 35.4
MELO3C018395.2 Cucumis melo HOM05D000725 ORTHO05D004053 4.5e-87 326.2 591 34.9
ClCG07G004630 Citrullus lanatus HOM05D000725 ORTHO05D004053 7.8e-87 325.5 589 35.1
Ciclev10033966m.g Citrus clementina HOM05D000725 ORTHO05D004053 2.3e-86 323.9 630 32.9
GSVIVG01032746001 Vitis vinifera HOM05D000725 ORTHO05D004053 4.3e-85 319.7 603 34.8
Atru.chr12.108 Acer truncatum HOM05D000725 ORTHO05D004053 1.2e-84 318.2 638 33.5
CsaV3_5G010570 Cucumis sativus L. HOM05D000725 ORTHO05D004053 1.8e-83 314.3 590 35.3
Sed0016433 Sechium edule HOM05D000725 ORTHO05D004053 1.8e-83 314.3 590 35.1
COL.COLO4_25795 Corchorus olitorius HOM05D000725 ORTHO05D004053 6.8e-83 312.4 579 34.4
Prupe.2G256800 Prunus persica HOM05D000725 ORTHO05D004053 2.0e-82 310.8 605 34.7
RcHm_v2.0_Chr1g0371111 Rosa chinensis HOM05D000725 ORTHO05D004053 1.7e-81 307.8 608 34.2
CSS0025020 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 2.9e-81 307.0 588 33.3
TWI73G1060 Tripterygium wilfordii HOM05D000725 ORTHO05D004053 3.7e-81 306.6 636 33.2
FAN03G2016 Fragaria x ananassa HOM05D000725 ORTHO05D004053 1.6e-79 301.2 617 34.2
Glyma.U027200 Glycine max HOM05D000725 ORTHO05D004053 1.6e-79 301.2 637 32.7
FvH4_7g25190 Fragaria vesca HOM05D000725 ORTHO05D004053 7.8e-79 298.9 614 33.7
Glyma.02G261800 Glycine max HOM05D000725 ORTHO05D004053 2.3e-78 297.4 647 32.8
Ca_05997_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 3.0e-78 297.0 628 32.5
THA.LOC104811007 Tarenaya hassleriana HOM05D000725 ORTHO05D004053 3.9e-78 296.6 614 32.4
Phvul.001G246400 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 3.3e-77 293.5 535 33.5
CANSAT56G0874 Cannabis sativa HOM05D000725 ORTHO05D004053 2.8e-76 290.4 590 33.7
FAN10G2086 Fragaria x ananassa HOM05D000725 ORTHO05D004053 3.6e-76 290.0 617 33.2
VMungo0647G1332 Vigna mungo HOM05D000725 ORTHO05D004053 1.1e-75 288.5 628 30.9
Lj1A961T79 Lonicera japonica HOM05D000725 ORTHO05D004053 2.3e-75 287.3 615 32.4
Phvul.008G220500 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 3.1e-75 287.0 648 30.9
Glyma.18G023900 Glycine max HOM05D000725 ORTHO05D004053 4.0e-75 286.6 576 33.2
Hma1.2p1_1013F.1_g247700 Hydrangea macrophylla HOM05D000725 ORTHO05D004053 8.9e-75 285.4 570 33.3
Psat2g030640 Pisum sativum HOM05D000725 ORTHO05D004053 8.9e-75 285.4 624 32.5
Thhalv10012460m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 1.5e-74 284.6 619 32.8
LjContig00357g0008885 Lotus japonicus HOM05D000725 ORTHO05D004053 2.6e-74 283.9 653 30.8
TPR.G8343 Trifolium pratense HOM05D000725 ORTHO05D004053 4.4e-74 283.1 627 32.2
Aa31LG1G14210 Aethionema arabicum HOM05D000725 ORTHO05D004053 1.3e-73 281.6 583 33.4
Medtr5g083300 Medicago truncatula HOM05D000725 ORTHO05D004053 1.7e-73 281.2 628 31.8
Lj8C62G8 Lonicera japonica HOM05D000725 ORTHO05D004053 4.9e-73 279.6 612 31.9
Carub.0006s1880 Capsella rubella HOM05D000725 ORTHO05D004053 2.4e-72 277.3 609 30.5
CARHR192380 Cardamine hirsuta HOM05D000725 ORTHO05D004053 3.2e-72 276.9 566 31.6
Cc02_g05980 Coffea canephora HOM05D000725 ORTHO05D004053 6.0e-71 272.7 602 32.6
BraA10t44031Z Brassica rapa HOM05D000725 ORTHO05D004053 1.0e-70 271.9 628 30.1
Sp6g24000 Schrenkiella parvula HOM05D000725 ORTHO05D004053 1.3e-70 271.6 605 31.4
A10p19550 Brassica napus HOM05D000725 ORTHO05D004053 1.7e-70 271.2 626 30.4
vmacro06943 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 3.0e-70 270.4 608 31.2
Sp7g16860 Schrenkiella parvula HOM05D000725 ORTHO05D004053 6.6e-70 269.2 591 31.5
Lalb_Chr10g0105301 Lupinus albus HOM05D000725 ORTHO05D004053 8.6e-70 268.9 639 31.5
Actinidia00658 Actinidia chinensis HOM05D000725 ORTHO05D004053 1.9e-69 267.7 594 33.3
C09p55760 Brassica napus HOM05D000725 ORTHO05D004053 1.9e-69 267.7 626 30.2
Nitab4.5_0001817g0060 Nicotiana tabacum HOM05D000725 ORTHO05D004053 1.9e-69 267.7 597 31.5
AL6G31990 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 2.5e-69 267.3 601 30.6
BcaB08g36500 Brassica carinata HOM05D000725 ORTHO05D004053 3.3e-69 266.9 629 29.7
arahy.Tifrunner.gnm1.ann1.Y9Z9L7 Arachis hypogaea HOM05D000725 ORTHO05D004053 5.6e-69 266.2 628 30.9
CAN.G830.1 Capsicum annuum HOM05D000725 ORTHO05D004053 9.5e-69 265.4 599 31.1
BolC9t58445H Brassica oleracea HOM05D000725 ORTHO05D004053 1.6e-68 264.6 627 30.3
arahy.Tifrunner.gnm1.ann1.MF2MUZ Arachis hypogaea HOM05D000725 ORTHO05D004053 2.1e-68 264.2 628 30.4
BcaC04g19431 Brassica carinata HOM05D000725 ORTHO05D004053 2.1e-68 264.2 627 30.5
Nitab4.5_0000058g0030 Nicotiana tabacum HOM05D000725 ORTHO05D004053 2.1e-68 264.2 598 31.9
PGR044G2605 Punica granatum HOM05D000725 ORTHO05D004053 2.1e-68 264.2 618 30.7
Lalb_Chr17g0346921 Lupinus albus HOM05D000725 ORTHO05D004053 2.8e-68 263.8 641 30.3
Lsat_1_v5_gn_8_13121 Lactuca sativa HOM05D000725 ORTHO05D004053 4.7e-68 263.1 579 32.0
Oeu023910.1 Olea europaea HOM05D000725 ORTHO05D004053 4.7e-68 263.1 577 31.4
AT5G20420 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 1.8e-67 261.2 601 30.4
MSTRG.8922 Avicennia marina HOM05D000725 ORTHO05D004053 6.8e-67 259.2 632 31.2
vmacro10000 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 1.2e-66 258.5 637 29.2
Peaxi162Scf00284g00316 Petunia axillaris HOM05D000725 ORTHO05D004053 2.0e-66 257.7 612 31.0
A08p12990 Brassica napus HOM05D000725 ORTHO05D004053 2.6e-66 257.3 599 29.4
BraA08t33283Z Brassica rapa HOM05D000725 ORTHO05D004053 9.9e-66 255.4 603 29.0
Thhalv10024231m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 1.7e-65 254.6 610 29.2
BolC8t48449H Brassica oleracea HOM05D000725 ORTHO05D004053 2.9e-65 253.8 605 28.6
Sc11g0005370 Simmondsia chinensis HOM05D000725 ORTHO05D004053 2.9e-65 253.8 600 31.2
DCAR_011852 Daucus carota HOM05D000725 ORTHO05D004053 1.4e-64 251.5 635 31.5
Lsat_1_v5_gn_8_13481 Lactuca sativa HOM05D000725 ORTHO05D004053 4.1e-64 250.0 602 30.4
PGSC0003DMG400023950 Solanum tuberosum HOM05D000725 ORTHO05D004053 1.6e-63 248.1 600 30.5
ECA233G5578 Erigeron canadensis HOM05D000725 ORTHO05D004053 2.1e-63 247.7 602 30.7
AUR62012311 Chenopodium quinoa HOM05D000725 ORTHO05D004053 2.7e-63 247.3 625 29.6
SGA_v2.0_scaffold437G51620 Striga asiatica HOM05D000725 ORTHO05D004053 2.7e-63 247.3 582 30.6
Carub.0008s1899 Capsella rubella HOM05D000725 ORTHO05D004053 3.5e-63 246.9 599 28.7
CARHR153700 Cardamine hirsuta HOM05D000725 ORTHO05D004053 3.5e-63 246.9 596 29.5
Solyc06g050510.3 Solanum lycopersicum HOM05D000725 ORTHO05D004053 3.5e-63 246.9 601 30.6
AT3G42670 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 4.6e-63 246.5 603 28.7
Sopen06g016030 Solanum pennellii HOM05D000725 ORTHO05D004053 4.6e-63 246.5 601 30.6
AL5G20900 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 6.0e-63 246.1 594 30.0
Ca_05999_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 7.8e-63 245.7 562 31.5
HanXRQChr08g0221881 Helianthus annuus HOM05D000725 ORTHO05D004053 3.0e-62 243.8 594 29.5
vmacro09999 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 3.9e-62 243.4 639 28.5
Lj6g0013892 Lotus japonicus HOM05D000725 ORTHO05D004053 5.1e-62 243.0 523 32.3
arahy.Tifrunner.gnm1.ann1.M7CALB Arachis hypogaea HOM05D000725 ORTHO05D004053 4.3e-61 240.0 601 29.8
Eucgr.J00168 Eucalyptus grandis HOM05D000725 ORTHO05D004053 5.6e-61 239.6 611 29.8
arahy.Tifrunner.gnm1.ann1.89IITC Arachis hypogaea HOM05D000725 ORTHO05D004053 1.2e-60 238.4 597 29.1
Ciclev10030786m.g Citrus clementina HOM05D000725 ORTHO05D004053 4.7e-60 236.5 523 30.2
AUR62022951 Chenopodium quinoa HOM05D000725 ORTHO05D004053 8.1e-60 235.7 628 29.0
Rhsim03G0147600 Rhododendron simsii HOM05D000725 ORTHO05D004053 1.5e-58 231.5 557 30.9
SGA_v2.0_scaffold618G53215 Striga asiatica HOM05D000725 ORTHO05D004053 7.6e-58 229.2 608 29.6
FAN06G2284 Fragaria x ananassa HOM05D000725 ORTHO05D004053 4.9e-57 226.5 270 44.1
Medtr7g026650 Medicago truncatula HOM05D000725 ORTHO05D004053 4.2e-56 223.4 516 30.2
Hund13529 Selenicereus undatus HOM05D000725 ORTHO05D004053 2.1e-55 221.1 638 27.1
Migut.F00630 Erythranthe guttata HOM05D000725 ORTHO05D004053 1.0e-54 218.8 602 28.1
unitig_46.g18735 Utricularia gibba HOM05D000725 ORTHO05D004053 8.7e-54 215.7 610 29.7
Nn2g14108 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.5e-53 214.9 634 27.1
Actinidia29727 Actinidia chinensis HOM05D000725 ORTHO05D004053 3.3e-53 213.8 553 28.6
EL10Ac2g04901 Beta vulgaris HOM05D000725 ORTHO05D004053 8.1e-52 209.1 605 26.8
Lj4g0016792 Lotus japonicus HOM05D000725 ORTHO05D004053 2.4e-51 207.6 558 28.3
Lj1g0026032 Lotus japonicus HOM05D000725 ORTHO05D004053 4.0e-51 206.8 572 28.8
Cpa.g.sc19.122 Carica papaya HOM05D000725 ORTHO05D004053 2.0e-50 204.5 212 48.1
Lj6g0001238 Lotus japonicus HOM05D000725 ORTHO05D004053 3.4e-50 203.8 567 27.9
Medtr3g071860 Medicago truncatula HOM05D000725 ORTHO05D004053 4.9e-49 199.9 576 26.9
Rhsim09G0180400 Rhododendron simsii HOM05D000725 ORTHO05D004053 2.4e-48 197.6 304 37.5
Medtr1g081750 Medicago truncatula HOM05D000725 ORTHO05D004053 2.1e-47 194.5 517 28.6
Psat5g144960 Pisum sativum HOM05D000725 ORTHO05D004053 7.8e-47 192.6 594 28.3
CSS0048207 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 8.7e-46 189.1 452 32.7
Ah.16g103940 Amaranthus hybridus HOM05D000725 ORTHO05D004053 1.6e-44 184.9 570 28.1
Aqoxy7G00421 Aquilegia oxysepala HOM05D000725 ORTHO05D004053 2.1e-44 184.5 620 26.1
Cc06_g20020 Coffea canephora HOM05D000725 ORTHO05D004053 1.4e-43 181.8 527 25.8
Potri.010G183766 Populus trichocarpa HOM05D000725 ORTHO05D004053 3.8e-41 173.7 161 51.6
Potri.010G183799 Populus trichocarpa HOM05D000725 ORTHO05D004053 9.3e-40 169.1 235 40.9
CARHR153740 Cardamine hirsuta HOM05D000725 ORTHO05D004053 8.7e-38 162.5 270 33.7
PSO765G0016 Papaver somniferum HOM05D000725 ORTHO05D004053 1.2e-34 152.1 255 34.1
HPP92_003690 Vanilla planifolia HOM05D000725 ORTHO05D004053 3.4e-34 150.6 548 25.7
PSO349G0143 Papaver somniferum HOM05D000725 ORTHO05D004053 7.6e-34 149.4 251 35.1
Zm00001eb331510 Zea mays HOM05D000725 ORTHO05D004053 2.1e-31 141.4 543 25.0
Aa31LG4G13300 Aethionema arabicum HOM05D000725 ORTHO05D004053 3.9e-30 137.1 559 25.2
Cpa.g.sc19.123 Carica papaya HOM05D000725 ORTHO05D004053 1.3e-28 132.1 176 39.8
Lj1g0014164 Lotus japonicus HOM05D000725 ORTHO05D004053 1.5e-26 125.2 489 24.1
Carub.0005s0881 Capsella rubella HOM05D000725 ORTHO05D004053 2.5e-24 117.9 191 32.5
TPR.G30914 Trifolium pratense HOM05D026095 ORTHO05D004053 7.1e-24 116.3 174 35.6
Os07g0692600 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D004053 1.6e-23 115.2 343 28.3
Nn5g29006 Nelumbo nucifera HOM05D000725 ORTHO05D004053 7.9e-23 112.8 151 37.7
Nn1g09202 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.3e-22 111.3 151 37.7
TAR636G0222 Trochodendron aralioides HOM05D000725 ORTHO05D004053 2.5e-21 107.8 80 56.2
TAR636G1138 Trochodendron aralioides HOM05D000725 ORTHO05D004053 9.7e-21 105.9 472 23.3
FAN01G2255 Fragaria x ananassa HOM05D000725 ORTHO05D004053 2.2e-20 104.8 160 38.1
Nn1g06958 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.5e-18 98.6 151 33.1
TPR.G35061 Trifolium pratense HOM05D000725 ORTHO05D004053 1.5e-18 98.6 117 41.9
CDE04G0926 Ceratophyllum demersum HOM05D000725 ORTHO05D004053 8.5e-17 92.8 493 21.9
MBI04_g43202_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 8.5e-17 92.8 263 26.2
ATR0594G114 Amborella trichopoda HOM05D000725 ORTHO05D004053 1.1e-16 92.4 450 24.7
Lj6g0006147 Lotus japonicus HOM05D000725 ORTHO05D004053 3.2e-16 90.9 142 36.6
Nn6g34612 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.7e-15 87.8 134 35.1
TPR.G30921 Trifolium pratense HOM05D000725 ORTHO05D004053 6.7e-14 83.2 181 29.3
MBI04_g44603_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 5.7e-13 80.1 148 36.5
Nn2g12181 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.8e-12 77.8 126 34.9
Nn2g14179 Nelumbo nucifera HOM05D002850 ORTHO05D004053 4.8e-12 77.0 80 45.0
Nn2g15117 Nelumbo nucifera HOM05D000725 ORTHO05D004053 6.3e-12 76.6 112 35.7
Actinidia33901 Actinidia chinensis HOM05D000725 ORTHO05D004053 1.5e-10 72.0 50 62.0
Ca_15161_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 5.9e-10 70.1 173 29.5
AagrBONN_evm.TU.Sc2ySwM_340.163 Anthoceros agrestis HOM05D000725 ORTHO05D021317 3.2e-08 64.3 102 36.3
Rhsim03G0253900 Rhododendron simsii HOM05D023492 ORTHO05D023105 9.4e-08 62.8 60 51.7
TPR.G18784 Trifolium pratense HOM05D000725 ORTHO05D004053 2.1e-07 61.6 129 31.0
CARHR153730 Cardamine hirsuta HOM05D000725 ORTHO05D004053 7.9e-07 59.7 61 39.3
Glyma.08G339800 Glycine max HOM05D000725 ORTHO05D002005 2.3e-06 58.2 133 30.1
Psat3g159320 Pisum sativum HOM05D000725 ORTHO05D002005 3.0e-06 57.8 85 36.5
Glyma.08G339900 Glycine max HOM05D000725 ORTHO05D002005 5.1e-06 57.0 78 33.3
Manes.15G171000 Manihot esculenta HOM05D000725 ORTHO05D002005 5.1e-06 57.0 85 37.6
TPR.G39061 Trifolium pratense HOM05D000725 ORTHO05D002005 5.1e-06 57.0 122 30.3
VMungo1383G0423 Vigna mungo HOM05D000725 ORTHO05D002005 5.1e-06 57.0 102 29.4
Psat4g169280 Pisum sativum HOM05D000725 ORTHO05D002005 6.7e-06 56.6 126 32.5
Glyma.12G006900 Glycine max HOM05D000725 ORTHO05D002005 8.8e-06 56.2 133 28.6


User provided reference genes

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