Gene: AT3G42670

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G42670
  • Transcript Identifier AT3G42670.3
  • Gene Type Coding gene
  • Location Chr3 : 14755906-14760085 : negative

Gene Family Information

  • ID HOM05D000725
  • #Genes/#Species 800/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G42670.3
  • symbol CHR38
  • Alias CLSY1,CLASSY 1,CLSY,CLASSY1
  • uniprot Q9M297

Descriptions

  • Description chromatin remodeling 38
  • Computational description chromatin remodeling 38 (CHR38); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: gene silencing by RNA; LOCATED IN: nucleolus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 42 (TAIR:AT5G20420.1); Has 13835 Blast hits to 12445 proteins in 1668 species: Archae - 89; Bacteria - 4181; Metazoa - 3164; Fungi - 3150; Plants - 1308; Viruses - 62; Other Eukaryotes - 1881 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080188
IEA
Gene Ontologygene silencing by RNA-directed DNA methylation
GO:0080188
IEA
InterProgene silencing by RNA-directed DNA methylation
GO:1900370
IMP
Gene Ontologypositive regulation of RNA interference1
GO:0031047
IMP
Gene Ontologygene silencing by RNA2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA
Gene Ontologynucleolus2
GO:0005654
IEA
GOA Databasenucleoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR038718 SNF2-like, N-terminal domain superfamily
IPR000330 SNF2, N-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR044567 SNF2 domain-containing protein CLSY/DRD1
Mapman id Description
12.5.1.10 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RDR2-polymerase accessory protein (CLSY1/2)