Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28510 Sapria himalayana HOM05D006143 ORTHO05D007587 8.3e-271 936.4 463 100.0
Manes.16G034450 Manihot esculenta HOM05D006143 ORTHO05D007587 1.0e-18 99.0 147 42.9
Duzib235G0124 Durio zibethinus HOM05D006143 ORTHO05D007587 1.1e-17 95.5 422 24.9
Ciclev10015477m.g Citrus clementina HOM05D006143 ORTHO05D007587 3.3e-17 94.0 149 39.6
PGR042G3042 Punica granatum HOM05D006143 ORTHO05D007587 4.3e-17 93.6 133 42.1
Haze_06321 Corylus avellana HOM05D006143 ORTHO05D007587 9.6e-17 92.4 442 23.8
CSS0012799 Camellia sinensis var. sinensis HOM05D006143 ORTHO05D007587 1.1e-15 89.0 424 23.8
Hma1.2p1_0155F.1_g068560 Hydrangea macrophylla HOM05D006143 ORTHO05D007587 1.1e-15 89.0 416 25.7
Thecc.06G177300 Theobroma cacao HOM05D006143 ORTHO05D007587 1.1e-15 89.0 414 25.8
Potri.011G062100 Populus trichocarpa HOM05D006143 ORTHO05D007587 1.4e-15 88.6 435 25.5
Cfa000554 Carpinus fangiana HOM05D006143 ORTHO05D007587 4.0e-15 87.0 133 38.3
TWI63G1355 Tripterygium wilfordii HOM05D006143 ORTHO05D007587 5.3e-15 86.7 437 23.1
COL.COLO4_31385 Corchorus olitorius HOM05D006143 ORTHO05D007587 9.0e-15 85.9 83 53.0
HanXRQChr11g0327231 Helianthus annuus HOM05D006143 ORTHO05D007587 1.5e-14 85.1 132 37.9
CiPaw.10G054900 Carya illinoinensis HOM05D006143 ORTHO05D007587 4.5e-14 83.6 132 40.9
Sabra11G0044000 Salix brachista HOM05D006143 ORTHO05D007587 4.5e-14 83.6 418 25.1
Eucgr.E02653 Eucalyptus grandis HOM05D006143 ORTHO05D007587 5.8e-14 83.2 91 47.3
Eucgr.E03166 Eucalyptus grandis HOM05D006143 ORTHO05D007587 5.8e-14 83.2 91 47.3
TAR626G0253 Trochodendron aralioides HOM05D006143 ORTHO05D007587 7.6e-14 82.8 134 37.3
Prupe.4G055900 Prunus persica HOM05D006143 ORTHO05D007587 9.9e-14 82.4 132 37.1
Sabra11G0042500 Salix brachista HOM05D006143 ORTHO05D007587 1.3e-13 82.0 79 55.7
GSVIVG01021150001 Vitis vinifera HOM05D006143 ORTHO05D007587 1.7e-13 81.6 426 22.8
Sopen02g022240 Solanum pennellii HOM05D006143 ORTHO05D007587 2.2e-13 81.3 138 40.6
Aqoxy4G00545 Aquilegia oxysepala HOM05D006143 ORTHO05D007587 2.9e-13 80.9 78 51.3
MELO3C002630.2 Cucumis melo HOM05D006143 ORTHO05D007587 2.9e-13 80.9 150 35.3
Glyma.07G203300 Glycine max HOM05D006143 ORTHO05D007587 3.8e-13 80.5 88 47.7
Ca_26041_v3 Cicer arietinum L. HOM05D006143 ORTHO05D007587 8.4e-13 79.3 94 46.8
CsaV3_1G012630 Cucumis sativus L. HOM05D006143 ORTHO05D007587 8.4e-13 79.3 150 34.7
Lsat_1_v5_gn_4_50941 Lactuca sativa HOM05D006143 ORTHO05D007587 8.4e-13 79.3 95 43.2
Rhsim02G0153000 Rhododendron simsii HOM05D006143 ORTHO05D007587 8.4e-13 79.3 133 39.8
Solyc02g077320.4 Solanum lycopersicum HOM05D006143 ORTHO05D007587 8.4e-13 79.3 138 39.9
Medtr6g039570 Medicago truncatula HOM05D006143 ORTHO05D007587 1.1e-12 79.0 104 43.3
Atru.chr10.1746 Acer truncatum HOM05D006143 ORTHO05D007587 1.4e-12 78.6 422 23.9
ECA234G2393 Erigeron canadensis HOM05D006143 ORTHO05D007587 1.4e-12 78.6 134 35.8
Glyma.13G172400 Glycine max HOM05D006143 ORTHO05D007587 1.4e-12 78.6 88 48.9
Dinv17374 Davidia involucrata HOM05D006143 ORTHO05D007587 1.9e-12 78.2 414 24.6
Phvul.003G056900 Phaseolus vulgaris HOM05D006143 ORTHO05D007587 2.4e-12 77.8 88 46.6
MBI07_g06435_MAGBIO Magnolia biondii HOM05D006143 ORTHO05D007587 3.2e-12 77.4 75 49.3
Psat7g118360 Pisum sativum HOM05D006143 ORTHO05D007587 3.2e-12 77.4 88 47.7
ClCG03G007960 Citrullus lanatus HOM05D006143 ORTHO05D007587 4.2e-12 77.0 140 35.7
MD05G1306600 Malus domestica HOM05D006143 ORTHO05D007587 4.2e-12 77.0 133 36.1
arahy.Tifrunner.gnm1.ann1.VAEI8B Arachis hypogaea HOM05D006143 ORTHO05D007587 7.1e-12 76.3 105 41.9
Migut.M01078 Erythranthe guttata HOM05D006143 ORTHO05D007587 9.3e-12 75.9 128 39.1
DCAR_007976 Daucus carota HOM05D006143 ORTHO05D007587 1.2e-11 75.5 75 48.0
Medtr4g087975 Medicago truncatula HOM05D006143 ORTHO05D007587 1.2e-11 75.5 107 41.1
arahy.Tifrunner.gnm1.ann1.W3DLTW Arachis hypogaea HOM05D006143 ORTHO05D007587 1.6e-11 75.1 105 41.9
RcHm_v2.0_Chr5g0009801 Rosa chinensis HOM05D006143 ORTHO05D007587 1.6e-11 75.1 147 36.7
unitig_699.g19338 Utricularia gibba HOM05D006143 ORTHO05D007587 1.6e-11 75.1 70 52.9
Cc02_g14290 Coffea canephora HOM05D006143 ORTHO05D007587 2.1e-11 74.7 202 29.7
TPR.G16154 Trifolium pratense HOM05D006143 ORTHO05D007587 2.7e-11 74.3 92 42.4
FAN21G2423 Fragaria x ananassa HOM05D006143 ORTHO05D007587 3.5e-11 73.9 101 39.6
Nitab4.5_0000376g0080 Nicotiana tabacum HOM05D006143 ORTHO05D007587 3.5e-11 73.9 95 41.1
Sed0020086 Sechium edule HOM05D006143 ORTHO05D007587 3.5e-11 73.9 83 45.8
Oeu045072.2 Olea europaea HOM05D006143 ORTHO05D007587 4.6e-11 73.6 133 35.3
Nn1g04309 Nelumbo nucifera HOM05D006143 ORTHO05D007587 6.0e-11 73.2 74 47.3
PSO832G2207 Papaver somniferum HOM05D006143 ORTHO05D007587 6.0e-11 73.2 78 46.2
Hund23878 Selenicereus undatus HOM05D006143 ORTHO05D007587 7.9e-11 72.8 129 37.2
Gorai.011G031600 Gossypium raimondii HOM05D006143 ORTHO05D007587 1.0e-10 72.4 74 50.0
Lalb_Chr16g0384181 Lupinus albus HOM05D006143 ORTHO05D007587 1.0e-10 72.4 113 38.1
FvH4_7g02070 Fragaria vesca HOM05D006143 ORTHO05D007587 1.3e-10 72.0 78 46.2
FAN03G1069 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.3e-10 72.0 78 46.2
FAN06G1438 Fragaria x ananassa HOM05D006143 ORTHO05D007587 1.3e-10 72.0 78 46.2
Lj4g0027541 Lotus japonicus HOM05D006143 ORTHO05D007587 1.3e-10 72.0 88 43.2
PSO210G3197 Papaver somniferum HOM05D006143 ORTHO05D007587 1.3e-10 72.0 76 50.0
PGSC0003DMG400010721 Solanum tuberosum HOM05D006143 ORTHO05D007587 1.3e-10 72.0 139 35.3
Peaxi162Scf00875g00320 Petunia axillaris HOM05D006143 ORTHO05D007587 1.8e-10 71.6 91 42.9
Cpa.g.sc7.33 Carica papaya HOM05D006143 ORTHO05D007587 3.0e-10 70.9 84 46.4
Sp7g15570 Schrenkiella parvula HOM05D006143 ORTHO05D007587 3.0e-10 70.9 82 42.7
AUR62031125 Chenopodium quinoa HOM05D006143 ORTHO05D007587 3.9e-10 70.5 136 33.1
FAN11G1643 Fragaria x ananassa HOM05D006143 ORTHO05D007587 3.9e-10 70.5 78 46.2
FAN16G0487 Fragaria x ananassa HOM05D006143 ORTHO05D007587 3.9e-10 70.5 78 46.2
Sc05g0007290 Simmondsia chinensis HOM05D006143 ORTHO05D007587 3.9e-10 70.5 75 48.0
AL7G35830 Arabidopsis lyrata HOM05D006143 ORTHO05D007587 5.1e-10 70.1 82 42.7
Os02g0312800 Oryza sativa ssp. japonica HOM05D006143 ORTHO05D007587 5.1e-10 70.1 71 49.3
Gohir.A10G029200 Gossypium hirsutum HOM05D006143 ORTHO05D007587 6.7e-10 69.7 131 33.6
Gohir.D10G029700 Gossypium hirsutum HOM05D006143 ORTHO05D007587 8.7e-10 69.3 131 33.6
Zm00001eb206790 Zea mays HOM05D006143 ORTHO05D007587 8.7e-10 69.3 137 30.7
SGA_v2.0_scaffold16G07658 Striga asiatica HOM05D006143 ORTHO05D007587 1.1e-09 68.9 139 33.8
Nitab4.5_0011727g0010 Nicotiana tabacum HOM05D006143 ORTHO05D007587 1.9e-09 68.2 136 34.6
AUR62014918 Chenopodium quinoa HOM05D006143 ORTHO05D007587 2.5e-09 67.8 136 33.1
FvH4_3g08270 Fragaria vesca HOM05D006143 ORTHO05D007587 3.3e-09 67.4 148 34.5
Carub.0007s2278 Capsella rubella HOM05D006143 ORTHO05D007587 4.3e-09 67.0 82 40.2
VMungo0251G1209 Vigna mungo HOM05D006143 ORTHO05D007587 4.3e-09 67.0 88 40.9
Thhalv10025244m.g Eutrema salsugineum HOM05D006143 ORTHO05D007587 1.3e-08 65.5 82 40.2
HPP92_003901 Vanilla planifolia HOM05D006143 ORTHO05D007587 1.3e-08 65.5 133 33.8
arahy.Tifrunner.gnm1.ann1.Y2C9I0 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.6e-08 65.1 78 42.3
Ah.01g004290 Amaranthus hybridus HOM05D006143 ORTHO05D007587 2.1e-08 64.7 83 41.0
THA.LOC104798414 Tarenaya hassleriana HOM05D006143 ORTHO05D007587 2.1e-08 64.7 161 29.8
EL10Ac8g20474 Beta vulgaris HOM05D006143 ORTHO05D007587 2.8e-08 64.3 83 39.8
AT4G18470 Arabidopsis thaliana HOM05D006143 ORTHO05D007587 4.8e-08 63.5 80 38.8
arahy.Tifrunner.gnm1.ann1.VQL787 Arachis hypogaea HOM05D006143 ORTHO05D007587 4.8e-08 63.5 83 42.2
BcaNung05875 Brassica carinata HOM05D006143 ORTHO05D007587 6.2e-08 63.2 99 35.4
Aa31LG6G1190 Aethionema arabicum HOM05D006143 ORTHO05D007587 1.4e-07 62.0 126 33.3
arahy.Tifrunner.gnm1.ann1.74Q5DQ Arachis hypogaea HOM05D006143 ORTHO05D007587 1.8e-07 61.6 83 41.0
BcaC09g51506 Brassica carinata HOM05D006143 ORTHO05D007587 2.4e-07 61.2 78 39.7
A01p10420 Brassica napus HOM05D006143 ORTHO05D007587 2.4e-07 61.2 78 39.7
C01p12400 Brassica napus HOM05D006143 ORTHO05D007587 2.4e-07 61.2 78 39.7
BolC1t01214H Brassica oleracea HOM05D006143 ORTHO05D007587 2.4e-07 61.2 78 39.7
BraA01t00988Z Brassica rapa HOM05D006143 ORTHO05D007587 2.4e-07 61.2 78 39.7
arahy.Tifrunner.gnm1.ann1.RYY8E4 Arachis hypogaea HOM05D006143 ORTHO05D007587 4.0e-07 60.5 83 41.0
arahy.Tifrunner.gnm1.ann1.Y1II92 Arachis hypogaea HOM05D006143 ORTHO05D007587 4.0e-07 60.5 83 41.0
MD10G1285700 Malus domestica HOM05D006143 ORTHO05D007587 5.3e-07 60.1 78 39.7
ATR0602G028 Amborella trichopoda HOM05D006143 ORTHO05D007587 9.0e-07 59.3 75 38.7
MD10G1285900 Malus domestica HOM05D006143 ORTHO05D007587 2.0e-06 58.2 39 61.5
CDE02G0230 Ceratophyllum demersum HOM05D006143 ORTHO05D007587 2.6e-06 57.8 78 39.7
CARHR225290 Cardamine hirsuta HOM05D006143 ORTHO05D007587 4.5e-06 57.0 126 31.7


User provided reference genes

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