Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26140 Sapria himalayana HOM05D002263 ORTHO05D003537 1.6e-61 239.2 119 100.0
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 5.9e-19 97.8 196 35.2
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 7.7e-19 97.4 191 34.0
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.0e-18 97.1 196 34.7
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 1.0e-18 97.1 191 34.6
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.7e-18 96.3 191 33.0
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 2.2e-18 95.9 196 34.2
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 3.8e-18 95.1 155 40.6
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 5.0e-18 94.7 195 34.9
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 8.5e-18 94.0 195 34.9
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 1.1e-17 93.6 191 35.1
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 1.4e-17 93.2 186 33.9
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 1.4e-17 93.2 195 34.9
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 1.9e-17 92.8 195 34.4
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.5e-17 92.4 195 34.4
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 2.5e-17 92.4 195 33.8
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 2.5e-17 92.4 185 32.4
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 3.2e-17 92.0 195 33.8
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 3.2e-17 92.0 200 32.5
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 3.2e-17 92.0 195 33.8
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 4.2e-17 91.7 192 32.3
Cpa.g.sc125.26 Carica papaya HOM05D002263 ORTHO05D003537 4.2e-17 91.7 191 33.0
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 4.2e-17 91.7 199 32.7
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 4.2e-17 91.7 195 32.8
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 5.5e-17 91.3 191 33.0
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 9.4e-17 90.5 195 32.8
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 9.4e-17 90.5 191 33.0
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 9.4e-17 90.5 191 33.0
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 9.4e-17 90.5 191 33.0
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.2e-16 90.1 185 31.9
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.2e-16 90.1 185 31.9
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 1.2e-16 90.1 144 43.8
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 2.1e-16 89.4 195 32.3
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.7e-16 89.0 195 33.3
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.7e-16 89.0 144 41.7
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.7e-16 89.0 144 41.7
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.7e-16 89.0 144 41.7
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.7e-16 89.0 144 41.7
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 2.7e-16 89.0 195 31.3
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 3.6e-16 88.6 192 31.8
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 4.6e-16 88.2 144 41.0
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 4.6e-16 88.2 144 42.4
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 6.1e-16 87.8 144 43.1
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 7.9e-16 87.4 195 32.3
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 7.9e-16 87.4 191 32.5
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 7.9e-16 87.4 191 32.5
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 7.9e-16 87.4 144 43.1
SHI19944 Sapria himalayana HOM05D002263 ORTHO05D003537 7.9e-16 87.4 132 43.2
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 1.0e-15 87.0 195 30.8
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 1.0e-15 87.0 195 30.8
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 1.4e-15 86.7 185 32.4
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 1.4e-15 86.7 110 46.4
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 1.8e-15 86.3 195 31.8
Nn7g36257 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.8e-15 86.3 114 43.9
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 1.8e-15 86.3 139 41.7
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 3.0e-15 85.5 192 31.8
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 3.0e-15 85.5 192 31.8
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 3.0e-15 85.5 110 45.5
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 3.0e-15 85.5 110 45.5
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 3.0e-15 85.5 195 33.8
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 3.0e-15 85.5 195 33.8
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 3.0e-15 85.5 192 31.2
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 3.9e-15 85.1 192 30.7
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 3.9e-15 85.1 110 44.5
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 3.9e-15 85.1 110 46.4
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 3.9e-15 85.1 191 33.0
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 5.1e-15 84.7 110 46.4
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 6.7e-15 84.3 110 45.5
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 8.8e-15 84.0 192 31.2
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 8.8e-15 84.0 192 31.2
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 8.8e-15 84.0 192 31.2
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 8.8e-15 84.0 110 43.6
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 1.1e-14 83.6 110 42.7
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 1.1e-14 83.6 110 44.5
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 1.1e-14 83.6 109 42.2
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 2.0e-14 82.8 217 29.5
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 2.0e-14 82.8 195 31.3
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 2.5e-14 82.4 200 31.5
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.5e-14 82.4 195 32.3
SEGI_34540 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 3.3e-14 82.0 123 42.3
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 5.7e-14 81.3 187 33.2
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 5.7e-14 81.3 110 43.6
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 5.7e-14 81.3 195 33.8
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 7.4e-14 80.9 129 38.8
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.3e-13 80.1 195 33.3
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 1.7e-13 79.7 116 45.7
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 1.7e-13 79.7 194 32.0
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 2.8e-13 79.0 195 32.8
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 6.3e-13 77.8 110 39.1
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 1.1e-12 77.0 195 28.7
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 1.4e-12 76.6 194 30.9
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 1.4e-12 76.6 194 29.4
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 2.4e-12 75.9 109 40.4
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 4.1e-12 75.1 194 30.9
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 4.1e-12 75.1 129 39.5
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 6.9e-12 74.3 195 29.7
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 9.1e-12 73.9 194 32.0
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 2.0e-11 72.8 123 39.0
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.6e-11 72.4 194 30.4
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 3.4e-11 72.0 194 29.9
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 3.4e-11 72.0 123 38.2
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 4.5e-11 71.6 194 29.9
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 5.9e-11 71.2 194 30.4
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 7.7e-11 70.9 194 29.9
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 7.7e-11 70.9 198 27.3
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 1.0e-10 70.5 113 38.9
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.0e-10 70.5 194 27.8
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.3e-10 70.1 198 29.8
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 1.7e-10 69.7 194 29.9
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 2.9e-10 68.9 101 43.6
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 3.8e-10 68.6 143 34.3
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 3.8e-10 68.6 194 29.4
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 3.8e-10 68.6 194 29.9
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 3.8e-10 68.6 107 39.3
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 5.0e-10 68.2 195 27.7
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 5.0e-10 68.2 123 36.6
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 6.5e-10 67.8 177 32.2
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 8.5e-10 67.4 110 39.1
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 1.1e-09 67.0 194 28.4
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.4e-09 66.6 149 34.2
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.9e-09 66.2 195 29.2
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 1.9e-09 66.2 195 26.2
AL3G19320 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 4.2e-09 65.1 102 37.3
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 5.5e-09 64.7 110 37.3
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 9.4e-09 63.9 107 37.4
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 1.2e-08 63.5 110 36.4
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 2.7e-08 62.4 110 35.5
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 4.7e-08 61.6 109 33.9
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 4.7e-08 61.6 103 38.8
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 6.1e-08 61.2 110 36.4
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 6.1e-08 61.2 119 30.3
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 7.9e-08 60.8 110 36.4
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 7.9e-08 60.8 110 36.4
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.8e-07 59.7 223 26.0
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 2.3e-07 59.3 175 28.0
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 3.0e-07 58.9 119 32.8
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.1e-06 57.0 110 37.3
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 1.1e-06 57.0 220 25.0
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 4.4e-06 55.1 110 31.8
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 4.4e-06 55.1 74 41.9
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 5.7e-06 54.7 113 29.2


User provided reference genes

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