Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25400 Sapria himalayana HOM05D003395 ORTHO05D004087 4.5e-169 597.8 296 100.0
SHI10456 Sapria himalayana HOM05D003395 ORTHO05D004087 2.9e-83 312.8 311 59.5
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 1.6e-70 270.4 303 50.5
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 1.8e-69 266.9 294 51.7
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 3.1e-69 266.2 294 51.7
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 1.2e-68 264.2 293 49.5
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 4.9e-67 258.8 293 48.1
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 1.4e-66 257.3 303 48.2
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 4.2e-66 255.8 304 49.3
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 4.2e-66 255.8 303 47.9
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 7.1e-66 255.0 293 48.8
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.6e-65 253.8 294 49.7
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 3.5e-65 252.7 291 49.1
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 3.5e-65 252.7 293 48.5
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 3.5e-65 252.7 294 49.7
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 6.0e-65 251.9 294 48.3
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 1.3e-64 250.8 294 49.3
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 3.9e-64 249.2 293 47.4
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 5.1e-64 248.8 303 46.9
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 5.1e-64 248.8 303 47.9
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 6.7e-64 248.4 304 48.0
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 6.7e-64 248.4 293 49.5
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 8.7e-64 248.1 304 47.7
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 8.7e-64 248.1 303 47.2
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 8.7e-64 248.1 303 47.2
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 1.1e-63 247.7 303 48.2
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 1.5e-63 247.3 303 47.5
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 1.5e-63 247.3 304 47.7
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 3.3e-63 246.1 304 48.0
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 3.3e-63 246.1 292 48.3
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 4.3e-63 245.7 293 47.4
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 4.3e-63 245.7 293 48.8
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 5.7e-63 245.4 291 47.4
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 9.6e-63 244.6 293 48.5
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 9.6e-63 244.6 303 46.5
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 9.6e-63 244.6 294 48.6
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 1.6e-62 243.8 294 49.0
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 1.6e-62 243.8 294 49.0
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 1.6e-62 243.8 304 47.4
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 3.7e-62 242.7 294 48.6
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 3.7e-62 242.7 294 49.0
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 4.8e-62 242.3 294 48.0
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 4.8e-62 242.3 294 48.6
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 6.3e-62 241.9 303 45.5
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 1.4e-61 240.7 303 45.5
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 1.4e-61 240.7 294 47.6
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 1.8e-61 240.4 293 47.1
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 4.1e-61 239.2 293 46.8
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 5.3e-61 238.8 294 48.3
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 6.9e-61 238.4 294 47.3
SHI34713 Sapria himalayana HOM05D003395 ORTHO05D004087 9.0e-61 238.0 256 53.5
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 1.2e-60 237.7 303 45.5
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 1.2e-60 237.7 293 47.4
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.5e-60 237.3 293 46.1
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 2.0e-60 236.9 293 46.4
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 2.0e-60 236.9 293 46.8
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 2.6e-60 236.5 294 47.3
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 3.4e-60 236.1 293 46.4
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 3.4e-60 236.1 304 47.0
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 1.7e-59 233.8 304 47.7
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 2.2e-59 233.4 293 45.4
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 2.2e-59 233.4 293 45.4
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 5.0e-59 232.3 293 45.1
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 5.0e-59 232.3 293 44.7
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 6.5e-59 231.9 293 45.4
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 6.5e-59 231.9 293 45.7
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 8.5e-59 231.5 293 45.1
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 1.1e-58 231.1 293 46.1
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.4e-58 230.7 293 46.1
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 1.9e-58 230.3 293 45.1
Eucgr.K02007 Eucalyptus grandis HOM05D003395 ORTHO05D004087 2.5e-58 229.9 282 47.2
BcaB06g29192 Brassica carinata HOM05D003395 ORTHO05D004087 4.2e-58 229.2 293 44.7
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 4.2e-58 229.2 303 43.9
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 4.2e-58 229.2 293 44.0
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 5.5e-58 228.8 303 44.9
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 5.5e-58 228.8 293 45.4
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 7.2e-58 228.4 294 44.2
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 7.2e-58 228.4 293 44.4
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 1.2e-57 227.6 293 44.0
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 4.6e-57 225.7 301 45.5
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 6.1e-57 225.3 294 45.9
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 1.3e-56 224.2 294 45.6
BcaC07g40053 Brassica carinata HOM05D003395 ORTHO05D004087 1.8e-56 223.8 293 43.0
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 1.8e-56 223.8 293 43.0
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 1.8e-56 223.8 293 43.0
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 1.8e-56 223.8 290 45.2
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 2.3e-56 223.4 293 43.3
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 2.3e-56 223.4 293 43.3
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 5.1e-56 222.2 279 46.6
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 5.1e-56 222.2 319 42.3
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 6.7e-56 221.9 279 46.6
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 6.7e-56 221.9 319 42.3
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 8.7e-56 221.5 293 43.3
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 3.3e-55 219.5 293 43.3
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 9.7e-55 218.0 319 41.4
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 2.2e-54 216.9 294 43.5
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 3.1e-53 213.0 299 41.8
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 9.1e-53 211.5 303 42.2
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 1.2e-52 211.1 268 46.3
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 1.5e-52 210.7 303 41.9
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 2.6e-52 209.9 274 44.9
SHI20623 Sapria himalayana HOM05D003395 ORTHO05D004087 4.5e-52 209.1 227 55.1
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 1.9e-50 203.8 268 44.8
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 3.2e-50 203.0 268 45.1
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 9.4e-50 201.4 324 38.3
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.6e-49 200.7 293 42.3
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.1e-49 200.3 267 44.9
Hma1.2p1_0556F.1_g178050 Hydrangea macrophylla HOM05D003395 ORTHO05D004087 1.8e-48 197.2 298 42.3
Thhalv10005836m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 1.5e-47 194.1 276 42.8
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 2.0e-47 193.7 271 44.3
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 4.4e-47 192.6 300 39.0
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 2.2e-46 190.3 291 40.9
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 1.8e-45 187.2 277 40.4
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 2.0e-44 183.7 296 38.9
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 2.6e-44 183.3 205 50.2
SHI27325 Sapria himalayana HOM05D003395 ORTHO05D004087 2.6e-44 183.3 200 54.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.1e-42 177.9 280 40.0
Eucgr.K01765 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.4e-42 177.6 216 46.3
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 1.0e-40 171.4 302 35.1
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 1.4e-40 171.0 294 40.1
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 8.8e-40 168.3 271 39.5
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 1.1e-39 167.9 306 36.9
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 6.5e-35 152.1 247 40.9
Gohir.A11G310000 Gossypium hirsutum HOM05D003395 ORTHO05D004087 9.4e-34 148.3 175 48.6
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 2.1e-33 147.1 213 42.7
SHI33206 Sapria himalayana HOM05D003395 ORTHO05D004087 8.8e-32 141.7 277 36.8
Lj3g0025487 Lotus japonicus HOM05D003395 ORTHO05D004087 1.7e-30 137.5 149 51.0
CAN.G624.32 Capsicum annuum HOM05D003395 ORTHO05D004087 2.2e-30 137.1 199 42.2
SHI37781 Sapria himalayana HOM05D003395 ORTHO05D004087 1.4e-29 134.4 232 42.2
SHI34459 Sapria himalayana HOM05D003395 ORTHO05D004087 5.9e-28 129.0 240 39.2
SHI34448 Sapria himalayana HOM05D003395 ORTHO05D004087 1.9e-26 124.0 162 48.8
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 2.5e-26 123.6 305 30.5
CDE11G0065 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 9.4e-26 121.7 187 42.8
SHI28043 Sapria himalayana HOM05D003395 ORTHO05D004087 2.7e-25 120.2 173 49.7
AagrBONN_evm.TU.Sc2ySwM_117.1001 Anthoceros agrestis HOM05D003395 ORTHO05D004087 6.8e-24 115.5 161 40.4
AL4G39910 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 5.7e-23 112.5 100 58.0
SHI45533 Sapria himalayana HOM05D003395 ORTHO05D004087 2.2e-22 110.5 102 58.8
SHI44367 Sapria himalayana HOM05D003395 ORTHO05D004087 2.0e-20 104.0 102 56.9
SHI40120 Sapria himalayana HOM05D003395 ORTHO05D004087 2.9e-19 100.1 102 56.9
SHI32634 Sapria himalayana HOM05D003395 ORTHO05D004087 1.1e-18 98.2 139 46.0
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 1.9e-18 97.4 108 50.9
SHI37551 Sapria himalayana HOM05D003395 ORTHO05D004087 1.6e-17 94.4 91 58.2
PGSC0003DMG402030272 Solanum tuberosum HOM05D003395 ORTHO05D004087 1.0e-16 91.7 137 43.1
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 2.3e-16 90.5 107 46.7
SHI40121 Sapria himalayana HOM05D003395 ORTHO05D004087 1.7e-14 84.3 54 79.6
CDE11G0192 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 1.6e-12 77.8 117 41.0
SHI32287 Sapria himalayana HOM05D003395 ORTHO05D004087 5.9e-12 75.9 109 45.0
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.5e-10 71.2 78 50.0
SHI51863 Sapria himalayana HOM05D003395 ORTHO05D004087 2.5e-10 70.5 118 41.5
CARHR167540 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.0e-08 65.1 81 42.0
RcHm_v2.0_Chr2g0152371 Rosa chinensis HOM05D003395 ORTHO05D004087 1.0e-08 65.1 116 38.8
SHI40123 Sapria himalayana HOM05D003395 ORTHO05D037522 4.0e-08 63.2 35 80.0
SHI37553 Sapria himalayana HOM05D000452 ORTHO05D037522 6.8e-08 62.4 37 75.7
SHI48926 Sapria himalayana HOM05D003395 ORTHO05D004087 2.6e-07 60.5 38 76.3
Actinidia17665 Actinidia chinensis HOM05D003395 ORTHO05D004087 4.4e-07 59.7 40 60.0
SHI37552 Sapria himalayana HOM05D003395 ORTHO05D004087 7.5e-07 58.9 39 74.4


User provided reference genes

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