Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI22763 Sapria himalayana HOM05D004573 ORTHO05D005764 5.6e-92 340.9 169 100.0
Manes.04G070300 Manihot esculenta HOM05D004573 ORTHO05D005764 1.1e-15 87.4 58 72.4
Potri.010G202800 Populus trichocarpa HOM05D004573 ORTHO05D005764 1.5e-15 87.0 61 67.2
Sabra10G0156500 Salix brachista HOM05D004573 ORTHO05D005764 2.5e-15 86.3 58 69.0
COL.COLO4_15058 Corchorus olitorius HOM05D004573 ORTHO05D005764 3.3e-15 85.9 64 64.1
Gohir.A05G349133 Gossypium hirsutum HOM05D004573 ORTHO05D005764 4.3e-15 85.5 61 65.6
LjContig00141g0003376 Lotus japonicus HOM05D004573 ORTHO05D005764 5.6e-15 85.1 61 67.2
Rhsim09G0166500 Rhododendron simsii HOM05D004573 ORTHO05D005764 5.6e-15 85.1 61 65.6
FvH4_7g22680 Fragaria vesca HOM05D004573 ORTHO05D005764 9.5e-15 84.3 61 67.2
FAN01G0989 Fragaria x ananassa HOM05D004573 ORTHO05D005764 9.5e-15 84.3 61 67.2
FAN01G2561 Fragaria x ananassa HOM05D004573 ORTHO05D005764 9.5e-15 84.3 61 67.2
FAN06G1159 Fragaria x ananassa HOM05D004573 ORTHO05D005764 9.5e-15 84.3 61 67.2
FAN06G2378 Fragaria x ananassa HOM05D004573 ORTHO05D005764 9.5e-15 84.3 61 67.2
Gorai.012G070900 Gossypium raimondii HOM05D004573 ORTHO05D005764 1.6e-14 83.6 61 65.6
FAN10G1883 Fragaria x ananassa HOM05D004573 ORTHO05D005764 2.8e-14 82.8 61 65.6
Lalb_Chr04g0251191 Lupinus albus HOM05D004573 ORTHO05D005764 2.8e-14 82.8 61 65.6
AUR62039368 Chenopodium quinoa HOM05D004573 ORTHO05D005764 3.6e-14 82.4 71 54.9
Eucgr.J00002 Eucalyptus grandis HOM05D004573 ORTHO05D005764 3.6e-14 82.4 61 65.6
RcHm_v2.0_Chr1g0367761 Rosa chinensis HOM05D004573 ORTHO05D005764 3.6e-14 82.4 61 65.6
FAN03G1996 Fragaria x ananassa HOM05D004573 ORTHO05D005764 4.7e-14 82.0 61 67.2
FAN03G2998 Fragaria x ananassa HOM05D004573 ORTHO05D005764 4.7e-14 82.0 61 67.2
vmacro10228 Vaccinium macrocarpon HOM05D004573 ORTHO05D005764 4.7e-14 82.0 58 67.2
Atru.chr12.431 Acer truncatum HOM05D004573 ORTHO05D005764 1.1e-13 80.9 58 65.5
CANSAT11G1219 Cannabis sativa HOM05D004573 ORTHO05D005764 1.1e-13 80.9 61 65.6
Glyma.02G248300 Glycine max HOM05D004573 ORTHO05D005764 1.1e-13 80.9 61 63.9
VMungo0647G0005 Vigna mungo HOM05D004573 ORTHO05D005764 1.4e-13 80.5 61 63.9
Glyma.14G068200 Glycine max HOM05D004573 ORTHO05D005764 2.3e-13 79.7 61 62.3
Thecc.10G040400 Theobroma cacao HOM05D004573 ORTHO05D005764 2.3e-13 79.7 61 62.3
Aqoxy4G02884 Aquilegia oxysepala HOM05D004573 ORTHO05D005764 3.1e-13 79.3 61 63.9
arahy.Tifrunner.gnm1.ann1.3B46PQ Arachis hypogaea HOM05D004573 ORTHO05D005764 3.1e-13 79.3 61 63.9
arahy.Tifrunner.gnm1.ann1.T39EX2 Arachis hypogaea HOM05D004573 ORTHO05D005764 3.1e-13 79.3 61 63.9
Cfa001465 Carpinus fangiana HOM05D004573 ORTHO05D005764 3.1e-13 79.3 61 63.9
CiPaw.01G288400 Carya illinoinensis HOM05D004573 ORTHO05D005764 3.1e-13 79.3 58 67.2
DCAR_027609 Daucus carota HOM05D004573 ORTHO05D005764 3.1e-13 79.3 57 66.7
ClCG07G003410 Citrullus lanatus HOM05D004573 ORTHO05D005764 4.0e-13 79.0 63 58.7
Ciclev10030556m.g Citrus clementina HOM05D004573 ORTHO05D005764 4.0e-13 79.0 61 63.9
Phvul.008G232400 Phaseolus vulgaris HOM05D004573 ORTHO05D005764 4.0e-13 79.0 61 62.3
Psat2g041280 Pisum sativum HOM05D004573 ORTHO05D005764 4.0e-13 79.0 61 60.7
QL08p059630 Quercus lobata HOM05D004573 ORTHO05D005764 4.0e-13 79.0 61 63.9
Haze_17077 Corylus avellana HOM05D004573 ORTHO05D005764 6.8e-13 78.2 61 62.3
MD01G1135400 Malus domestica HOM05D004573 ORTHO05D005764 6.8e-13 78.2 61 62.3
Sed0007030 Sechium edule HOM05D004573 ORTHO05D005764 8.9e-13 77.8 61 60.7
Cpa.g.sc1.417 Carica papaya HOM05D004573 ORTHO05D005764 1.2e-12 77.4 61 59.0
Dinv26026 Davidia involucrata HOM05D004573 ORTHO05D005764 1.2e-12 77.4 61 60.7
Lj8C83T9 Lonicera japonica HOM05D004573 ORTHO05D005764 1.5e-12 77.0 58 62.1
Actinidia13882 Actinidia chinensis HOM05D004573 ORTHO05D005764 2.0e-12 76.6 58 62.1
CsaV3_5G008150 Cucumis sativus L. HOM05D004573 ORTHO05D005764 2.0e-12 76.6 61 59.0
Solyc06g043030.4 Solanum lycopersicum HOM05D004573 ORTHO05D005764 2.0e-12 76.6 61 60.7
Sopen06g013510 Solanum pennellii HOM05D004573 ORTHO05D005764 2.0e-12 76.6 61 60.7
Nn2g11126 Nelumbo nucifera HOM05D004573 ORTHO05D005764 4.4e-12 75.5 61 59.0
Prupe.2G236800 Prunus persica HOM05D004573 ORTHO05D005764 4.4e-12 75.5 61 60.7
PGR044G2694 Punica granatum HOM05D004573 ORTHO05D005764 4.4e-12 75.5 89 51.7
Actinidia29230 Actinidia chinensis HOM05D004573 ORTHO05D005764 5.8e-12 75.1 58 60.3
AUR62012098 Chenopodium quinoa HOM05D004573 ORTHO05D005764 5.8e-12 75.1 61 59.0
MD07G1200100 Malus domestica HOM05D004573 ORTHO05D005764 5.8e-12 75.1 61 60.7
Medtr5g079920 Medicago truncatula HOM05D004573 ORTHO05D005764 5.8e-12 75.1 61 60.7
GSVIVG01016531001 Vitis vinifera HOM05D004573 ORTHO05D005764 5.8e-12 75.1 61 60.7
TAR623G0262 Trochodendron aralioides HOM05D004573 ORTHO05D005764 7.5e-12 74.7 61 60.7
HPP92_001680 Vanilla planifolia HOM05D004573 ORTHO05D005764 7.5e-12 74.7 61 57.4
CSS0013300 Camellia sinensis var. sinensis HOM05D004573 ORTHO05D005764 9.9e-12 74.3 61 60.7
CSS0014274 Camellia sinensis var. sinensis HOM05D004573 ORTHO05D005764 9.9e-12 74.3 61 60.7
MELO3C023865.2 Cucumis melo HOM05D004573 ORTHO05D005764 9.9e-12 74.3 61 57.4
Gohir.A05G301800 Gossypium hirsutum HOM05D004573 ORTHO05D005764 9.9e-12 74.3 61 60.7
Gohir.D05G301500 Gossypium hirsutum HOM05D004573 ORTHO05D005764 9.9e-12 74.3 61 60.7
Nitab4.5_0000897g0020 Nicotiana tabacum HOM05D004573 ORTHO05D005764 9.9e-12 74.3 61 60.7
Os01g0973300 Oryza sativa ssp. japonica HOM05D004573 ORTHO05D005764 9.9e-12 74.3 61 57.4
MSTRG.284 Avicennia marina HOM05D004573 ORTHO05D005764 1.3e-11 73.9 58 63.8
ECA233G3287 Erigeron canadensis HOM05D004573 ORTHO05D005764 1.3e-11 73.9 58 62.1
Migut.F01444 Erythranthe guttata HOM05D004573 ORTHO05D005764 1.3e-11 73.9 61 60.7
CAN.G55.6 Capsicum annuum HOM05D004573 ORTHO05D005764 1.7e-11 73.6 61 59.0
CDE04G1394 Ceratophyllum demersum HOM05D004573 ORTHO05D005764 1.7e-11 73.6 61 55.7
Ca_05890_v3 Cicer arietinum L. HOM05D004573 ORTHO05D005764 1.7e-11 73.6 61 59.0
Oeu053152.1 Olea europaea HOM05D004573 ORTHO05D005764 1.7e-11 73.6 61 60.7
SalBow3G0200 Salvia bowleyana HOM05D004573 ORTHO05D005764 1.7e-11 73.6 58 58.6
Cc02_g07730 Coffea canephora HOM05D004573 ORTHO05D005764 2.9e-11 72.8 58 58.6
Gorai.009G319600 Gossypium raimondii HOM05D004573 ORTHO05D005764 2.9e-11 72.8 61 59.0
HanXRQChr08g0220781 Helianthus annuus HOM05D004573 ORTHO05D005764 2.9e-11 72.8 58 60.3
PSO339G0476 Papaver somniferum HOM05D004573 ORTHO05D005764 4.9e-11 72.0 61 59.0
Peaxi162Scf00658g00843 Petunia axillaris HOM05D004573 ORTHO05D005764 4.9e-11 72.0 58 60.3
TPR.G3490 Trifolium pratense HOM05D004573 ORTHO05D005764 6.4e-11 71.6 61 57.4
Zm00001eb260950 Zea mays HOM05D004573 ORTHO05D005764 6.4e-11 71.6 61 55.7
MBI14_g37190_MAGBIO Magnolia biondii HOM05D004573 ORTHO05D005764 1.1e-10 70.9 61 55.7
Sc10g0001660 Simmondsia chinensis HOM05D004573 ORTHO05D005764 1.4e-10 70.5 61 55.7
PSO384G3826 Papaver somniferum HOM05D004573 ORTHO05D005764 2.4e-10 69.7 61 57.4
SGA_v2.0_scaffold2G00997 Striga asiatica HOM05D004573 ORTHO05D005764 2.4e-10 69.7 58 58.6
BcaB01g00096 Brassica carinata HOM05D004573 ORTHO05D005764 3.2e-10 69.3 61 54.1
BcaC07g39867 Brassica carinata HOM05D004573 ORTHO05D005764 3.2e-10 69.3 61 54.1
A09p48420 Brassica napus HOM05D004573 ORTHO05D005764 3.2e-10 69.3 61 54.1
C08p30730 Brassica napus HOM05D004573 ORTHO05D005764 3.2e-10 69.3 61 54.1
BolC8t50690H Brassica oleracea HOM05D004573 ORTHO05D005764 3.2e-10 69.3 61 54.1
BraA09t40294Z Brassica rapa HOM05D004573 ORTHO05D005764 3.2e-10 69.3 61 54.1
Aa31LG10G10520 Aethionema arabicum HOM05D004573 ORTHO05D005764 4.1e-10 68.9 61 50.8
EL10Ac2g04737 Beta vulgaris HOM05D004573 ORTHO05D005764 4.1e-10 68.9 58 56.9
TWI38G0403 Tripterygium wilfordii HOM05D004573 ORTHO05D005764 5.4e-10 68.6 61 55.7
unitig_21.g20296 Utricularia gibba HOM05D004573 ORTHO05D005764 5.4e-10 68.6 61 52.5
AT3G55480 Arabidopsis thaliana HOM05D004573 ORTHO05D005764 7.1e-10 68.2 61 52.5
Sp5g06990 Schrenkiella parvula HOM05D004573 ORTHO05D005764 9.2e-10 67.8 61 54.1
TWI63G1141 Tripterygium wilfordii HOM05D004573 ORTHO05D005764 9.2e-10 67.8 61 55.7
Ah.16g102370 Amaranthus hybridus HOM05D004573 ORTHO05D005764 1.2e-09 67.4 58 55.2
CARHR165530 Cardamine hirsuta HOM05D004573 ORTHO05D005764 1.2e-09 67.4 61 52.5
AL5G36630 Arabidopsis lyrata HOM05D004573 ORTHO05D005764 1.6e-09 67.0 58 53.4
Pp3c8_13030 Physcomitrium patens HOM05D004573 ORTHO05D005764 1.6e-09 67.0 61 59.0
Pp3c8_13033 Physcomitrium patens HOM05D004573 ORTHO05D005764 1.6e-09 67.0 61 59.0
Carub.0005s2220 Capsella rubella HOM05D004573 ORTHO05D005764 2.1e-09 66.6 61 52.5
Thhalv10010081m.g Eutrema salsugineum HOM05D004573 ORTHO05D005764 2.1e-09 66.6 61 52.5
THA.LOC104808042 Tarenaya hassleriana HOM05D004573 ORTHO05D005764 2.1e-09 66.6 61 50.8
Lsat_1_v5_gn_8_15420 Lactuca sativa HOM05D004573 ORTHO05D005764 3.5e-09 65.9 58 53.4
ATR0559G310 Amborella trichopoda HOM05D004573 ORTHO05D005764 2.3e-08 63.2 61 54.1
CARHR159380 Cardamine hirsuta HOM05D004573 ORTHO05D005764 6.6e-08 61.6 61 49.2
Mapoly0053s0031 Marchantia polymorpha HOM05D004573 ORTHO05D005764 2.5e-07 59.7 59 45.8
AagrBONN_evm.TU.Sc2ySwM_228.842 Anthoceros agrestis HOM05D004573 ORTHO05D005764 2.1e-06 56.6 61 49.2
SEGI_13974 Sequoiadendron giganteum HOM05D008768 ORTHO05D010678 2.8e-06 56.2 58 46.6


User provided reference genes

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