Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 0.0e+00 1909.0 977 100.0
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 4.6e-271 938.3 1024 51.0
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 2.6e-258 896.0 1018 49.7
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 1.5e-253 880.2 1020 49.6
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 2.5e-248 862.8 1022 48.7
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 5.5e-248 861.7 1019 47.9
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 6.7e-246 854.7 1022 47.7
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 2.2e-241 839.7 1022 47.5
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 1.5e-240 837.0 1022 47.6
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 1.9e-240 836.6 1028 47.6
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 5.5e-240 835.1 1037 46.8
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 7.2e-240 834.7 1035 46.7
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 1.4e-238 830.5 1037 46.5
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 3.0e-238 829.3 1035 46.3
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 5.2e-238 828.6 1024 45.7
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 6.7e-238 828.2 1036 46.3
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 4.1e-235 818.9 1037 45.7
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 6.5e-233 811.6 1023 45.0
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 1.4e-230 803.9 1039 44.5
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 2.3e-230 803.1 1025 45.4
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 5.2e-230 802.0 1029 45.3
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 2.0e-229 800.0 1026 44.7
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 1.7e-228 797.0 1030 45.7
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 3.7e-228 795.8 1029 45.0
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 1.1e-227 794.3 1025 44.6
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 1.0e-225 787.7 1024 44.1
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 2.9e-225 786.2 1022 45.1
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 1.9e-224 783.5 1023 44.7
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 2.5e-224 783.1 1027 44.6
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 9.5e-224 781.2 1022 44.6
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 1.8e-222 776.9 988 45.5
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 8.8e-222 774.6 1004 44.0
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 5.4e-219 765.4 866 48.4
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 1.7e-217 760.4 1025 43.0
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 3.3e-216 756.1 1022 42.2
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 1.2e-215 754.2 1025 42.6
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 6.1e-215 751.9 1022 43.5
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 6.1e-215 751.9 1019 43.8
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 1.0e-214 751.1 1021 43.9
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 1.8e-214 750.4 1036 44.0
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 3.0e-214 749.6 1019 43.6
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 4.0e-214 749.2 1036 42.9
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 4.0e-214 749.2 1036 42.9
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.2e-213 747.7 988 43.4
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 1.5e-213 747.3 1017 43.7
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 1.5e-213 747.3 1047 41.7
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 7.5e-213 745.0 1033 43.4
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 9.8e-213 744.6 1023 42.5
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 1.7e-212 743.8 1031 43.2
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 1.7e-212 743.8 1023 43.3
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 6.4e-212 741.9 1034 43.6
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 5.4e-211 738.8 1039 42.9
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 1.6e-210 737.3 1031 43.1
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 2.7e-210 736.5 1019 43.9
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 4.6e-210 735.7 1017 42.6
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 5.9e-210 735.3 1010 42.6
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 5.9e-210 735.3 1019 42.8
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 3.0e-209 733.0 1029 42.4
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 3.0e-209 733.0 1000 43.3
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 5.6e-208 728.8 1020 42.1
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 9.5e-208 728.0 1018 43.5
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 4.7e-207 725.7 971 43.2
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 2.3e-206 723.4 1021 43.2
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 6.8e-206 721.8 972 43.2
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 1.1e-203 714.5 1045 40.9
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 4.1e-203 712.6 977 42.1
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 3.9e-201 706.1 1019 42.5
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 6.6e-201 705.3 1001 41.8
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.4e-198 697.6 1047 40.5
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 1.4e-198 697.6 1026 41.4
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 3.1e-198 696.4 1018 41.7
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 2.0e-197 693.7 1018 41.7
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 4.4e-197 692.6 1018 41.7
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 9.8e-197 691.4 1018 42.3
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 3.7e-196 689.5 1017 42.0
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 4.9e-196 689.1 1018 41.5
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 6.4e-196 688.7 1011 40.6
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 3.2e-195 686.4 1044 41.1
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 3.2e-195 686.4 1004 40.8
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 6.0e-194 682.2 1032 41.0
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 1.3e-193 681.0 1047 40.6
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 3.9e-193 679.5 1017 41.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 5.1e-193 679.1 1047 40.5
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 1.9e-192 677.2 998 41.1
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 1.9e-192 677.2 1055 40.9
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 2.9e-188 663.3 1017 40.9
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 8.6e-185 651.7 986 41.1
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 2.5e-184 650.2 1048 40.1
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 1.8e-174 617.5 1019 37.1
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 3.1e-174 616.7 870 42.8
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.0e-161 573.5 1040 35.9
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.6e-160 569.3 1043 36.0
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 3.1e-150 537.0 1019 36.2
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.4e-142 510.8 991 35.0
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.0e-133 481.1 567 46.2
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.9e-133 479.6 780 38.3
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.9e-125 453.0 520 48.3
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 3.2e-123 447.2 665 41.1
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 9.4e-123 445.7 665 41.2
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 2.6e-120 437.6 666 40.2
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 2.5e-115 421.0 473 49.5
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 2.2e-111 407.9 1036 30.6
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.6e-109 401.7 1040 31.3
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 2.3e-105 387.9 991 30.3
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 5.7e-104 383.3 422 48.8
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.1e-102 379.0 566 38.7
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 7.8e-93 346.3 351 51.3
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.8e-90 337.8 961 28.7
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 2.2e-87 328.2 504 38.7
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 3.5e-85 320.9 455 44.4
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 1.7e-84 318.5 483 41.2
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 8.1e-82 309.7 463 41.9
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.8e-81 308.5 382 47.4
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.4e-78 298.9 455 38.7
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.5e-75 288.9 453 39.1
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-66 258.5 825 26.9
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.4e-57 228.4 320 39.4
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.5e-56 225.7 300 43.7
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 4.5e-56 224.2 392 36.7
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.5e-51 208.4 426 38.0
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 3.4e-48 198.0 414 34.5
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.9e-43 182.2 360 33.1
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 9.6e-43 179.9 201 48.3
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 8.2e-42 176.8 282 36.2
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 6.1e-29 134.0 549 23.7
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 1.5e-27 129.4 193 40.9
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.9e-27 129.0 199 41.7
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.1e-25 123.2 122 50.0
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 2.6e-24 118.6 97 60.8
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-23 116.7 208 37.5
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 1.9e-22 112.5 167 44.3
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.2e-22 111.3 178 39.3
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 4.7e-21 107.8 175 35.4
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 7.9e-21 107.1 136 44.1
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 3.9e-20 104.8 139 43.2
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 4.4e-19 101.3 147 38.8
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 5.3e-09 67.8 97 40.2
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-08 66.6 97 40.2
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 1.3e-07 63.2 114 32.5
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 3.8e-07 61.6 178 24.7


User provided reference genes

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