Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19944 Sapria himalayana HOM05D002263 ORTHO05D003537 6.9e-139 497.3 247 100.0
SHI25342 Sapria himalayana HOM05D002263 ORTHO05D003537 1.7e-44 183.7 200 54.0
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.4e-43 180.6 324 36.7
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.2e-42 177.6 316 37.0
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 6.0e-42 175.3 316 39.6
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 7.8e-42 174.9 328 35.7
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 7.8e-42 174.9 323 35.3
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 7.8e-42 174.9 323 35.6
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.3e-41 174.1 328 36.0
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 1.3e-41 174.1 322 35.7
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 1.3e-41 174.1 315 36.8
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 3.9e-41 172.6 313 36.1
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 6.6e-41 171.8 315 37.5
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 6.6e-41 171.8 320 35.9
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 8.7e-41 171.4 341 34.9
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 8.7e-41 171.4 330 35.8
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.1e-40 171.0 323 35.0
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-40 170.2 330 35.5
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.9e-40 170.2 309 35.6
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.5e-40 169.9 330 35.5
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.5e-40 169.9 330 35.5
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 3.3e-40 169.5 233 42.9
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 4.3e-40 169.1 321 37.4
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 7.3e-40 168.3 324 36.7
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 7.3e-40 168.3 309 35.9
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 9.6e-40 167.9 314 36.9
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.1e-39 166.8 325 34.8
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.8e-39 166.4 326 36.5
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 3.6e-39 166.0 306 37.3
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 4.8e-39 165.6 325 35.4
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 4.8e-39 165.6 320 35.9
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 4.8e-39 165.6 324 36.1
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 6.2e-39 165.2 318 37.1
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 8.1e-39 164.9 330 34.8
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 8.1e-39 164.9 306 36.9
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 1.1e-38 164.5 322 35.7
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.4e-38 164.1 312 35.6
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 1.4e-38 164.1 322 35.7
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 1.8e-38 163.7 321 35.2
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 1.8e-38 163.7 320 36.6
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 3.1e-38 162.9 317 36.6
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 4.0e-38 162.5 316 34.5
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 5.3e-38 162.2 318 35.5
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 6.9e-38 161.8 324 36.1
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 6.9e-38 161.8 326 35.0
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 6.9e-38 161.8 325 34.2
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 1.5e-37 160.6 311 35.0
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.0e-37 160.2 328 34.8
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.0e-37 160.2 328 34.8
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 2.6e-37 159.8 327 32.7
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 2.6e-37 159.8 325 34.2
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 2.6e-37 159.8 329 35.6
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 2.6e-37 159.8 329 35.6
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 2.6e-37 159.8 325 35.1
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 3.4e-37 159.5 321 34.3
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 4.4e-37 159.1 312 34.6
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 4.4e-37 159.1 320 34.7
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 4.4e-37 159.1 322 36.3
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 4.4e-37 159.1 324 35.5
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 7.6e-37 158.3 321 34.0
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 7.6e-37 158.3 316 35.4
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 1.3e-36 157.5 322 33.9
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 1.3e-36 157.5 311 34.1
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 1.3e-36 157.5 318 35.2
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 1.7e-36 157.1 317 35.6
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.2e-36 156.8 310 34.8
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 2.9e-36 156.4 327 32.4
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 2.9e-36 156.4 323 34.7
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 2.9e-36 156.4 303 33.3
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.9e-36 156.4 310 34.5
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 1.1e-35 154.5 319 32.9
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 1.9e-35 153.7 316 34.2
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 1.9e-35 153.7 319 32.6
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 1.9e-35 153.7 316 35.1
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 3.2e-35 152.9 321 36.1
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 4.2e-35 152.5 325 33.5
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 5.4e-35 152.1 314 33.4
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 5.4e-35 152.1 321 33.0
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 1.2e-34 151.0 321 32.7
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 1.6e-34 150.6 319 31.3
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 1.6e-34 150.6 315 34.9
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 2.1e-34 150.2 296 35.8
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.7e-34 149.8 318 34.0
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 3.5e-34 149.4 330 32.7
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 3.5e-34 149.4 305 34.8
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 6.0e-34 148.7 329 33.7
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 7.9e-34 148.3 341 32.3
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 7.9e-34 148.3 319 31.3
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 7.9e-34 148.3 319 31.3
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 7.9e-34 148.3 319 31.3
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 1.0e-33 147.9 320 31.9
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.0e-33 147.9 328 32.3
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.0e-33 147.9 328 32.3
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.0e-33 147.9 314 33.1
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 3.0e-33 146.4 314 33.8
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 3.0e-33 146.4 309 35.3
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 3.9e-33 146.0 316 31.3
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 3.9e-33 146.0 322 33.9
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 5.1e-33 145.6 314 32.5
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 5.1e-33 145.6 328 32.9
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 6.6e-33 145.2 317 34.4
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 8.7e-33 144.8 319 31.0
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 8.7e-33 144.8 322 32.3
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.1e-32 144.4 331 33.5
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 1.5e-32 144.1 328 33.2
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.5e-32 144.1 323 33.4
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 3.3e-32 142.9 316 32.3
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 3.3e-32 142.9 315 34.9
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 1.3e-31 141.0 315 32.1
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.6e-31 140.6 323 33.4
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.1e-31 140.2 317 31.9
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 2.8e-31 139.8 269 34.2
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 4.8e-31 139.0 323 32.8
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 6.2e-31 138.7 234 38.9
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 3.1e-30 136.3 343 29.7
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 6.9e-30 135.2 321 32.1
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 6.9e-30 135.2 310 34.2
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 1.2e-29 134.4 313 31.3
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 7.6e-29 131.7 344 32.0
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 2.2e-28 130.2 287 36.9
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 2.9e-28 129.8 285 34.4
Cpa.g.sc125.26 Carica papaya HOM05D002263 ORTHO05D003537 1.1e-27 127.9 295 31.9
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 1.4e-27 127.5 310 31.3
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 1.9e-27 127.1 345 30.7
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 2.4e-27 126.7 288 35.1
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.3e-25 120.9 315 31.4
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 1.8e-25 120.6 307 32.6
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 5.1e-25 119.0 309 29.8
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.3e-23 114.4 325 31.7
Nn7g36257 Nelumbo nucifera HOM05D002263 ORTHO05D003537 3.7e-23 112.8 128 50.0
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 8.1e-23 111.7 332 28.6
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 1.4e-22 110.9 105 49.5
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 9.0e-22 108.2 334 29.0
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 9.0e-22 108.2 329 29.8
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.0e-20 104.8 330 26.7
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 1.0e-20 104.8 327 27.8
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 2.2e-20 103.6 325 28.3
QL04p008053 Quercus lobata HOM05D002263 ORTHO05D003537 3.2e-19 99.8 102 51.0
Sabra09G0043300 Salix brachista HOM05D002263 ORTHO05D003537 7.1e-19 98.6 128 44.5
QL08p003465 Quercus lobata HOM05D002263 ORTHO05D012916 9.3e-19 98.2 135 43.7
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 2.1e-18 97.1 304 26.3
Lj4A284T34 Lonicera japonica HOM05D002263 ORTHO05D013693 7.9e-18 95.1 103 47.6
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 2.3e-17 93.6 81 51.9
QL02p053676 Quercus lobata HOM05D002263 ORTHO05D003537 3.0e-17 93.2 135 42.2
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 5.1e-17 92.4 317 26.5
QL08p037214 Quercus lobata HOM05D002263 ORTHO05D005465 8.7e-17 91.7 128 43.8
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 8.7e-17 91.7 128 43.8
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 8.7e-17 91.7 128 43.8
QL08p021041 Quercus lobata HOM05D002263 ORTHO05D012916 1.1e-16 91.3 128 43.8
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 2.5e-16 90.1 79 55.7
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 2.5e-16 90.1 128 43.0
SHI26140 Sapria himalayana HOM05D002263 ORTHO05D003537 2.5e-16 90.1 132 43.2
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 4.3e-16 89.4 79 54.4
SEGI_34540 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 1.6e-15 87.4 127 42.5
A03p58620 Brassica napus HOM05D002263 ORTHO05D013693 2.8e-15 86.7 83 50.6
BraA03t14922Z Brassica rapa HOM05D002263 ORTHO05D013693 2.8e-15 86.7 83 50.6
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 3.7e-15 86.3 304 27.6
SEGI_14036 Sequoiadendron giganteum HOM05D002263 ORTHO05D013693 4.1e-14 82.8 80 48.8
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 6.9e-14 82.0 118 43.2
FAN25G0983 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.0e-13 80.5 280 27.9
A03p58560 Brassica napus HOM05D002263 ORTHO05D013693 4.5e-13 79.3 83 49.4
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 5.9e-13 79.0 105 45.7
BraA03t14916Z Brassica rapa HOM05D002263 ORTHO05D013693 5.9e-13 79.0 83 49.4
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 1.0e-12 78.2 325 24.3
MD09G1237200 Malus domestica HOM05D002263 ORTHO05D013693 1.3e-12 77.8 99 44.4
QL10p065355 Quercus lobata HOM05D002263 ORTHO05D029945 1.7e-12 77.4 71 52.1
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 6.5e-12 75.5 75 49.3
FvH4_3g01730 Fragaria vesca HOM05D002263 ORTHO05D003537 8.4e-12 75.1 91 42.9
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 2.7e-10 70.1 283 26.9
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 3.5e-10 69.7 75 44.0
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 7.9e-10 68.6 54 57.4
Hma1.2p1_1755F.1_g300980 Hydrangea macrophylla HOM05D002263 ORTHO05D013693 2.3e-09 67.0 68 52.9
MBI05_g27107_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 3.0e-09 66.6 84 45.2
Sabra16G0162200 Salix brachista HOM05D002263 ORTHO05D016312 8.7e-09 65.1 66 51.5
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 4.3e-08 62.8 140 31.4
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 4.3e-08 62.8 135 36.3
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 3.7e-07 59.7 82 40.2
AL3G19320 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 3.1e-06 56.6 104 34.6
Nn1g07152 Nelumbo nucifera HOM05D002263 ORTHO05D003537 4.1e-06 56.2 62 45.2
COL.COLO4_02379 Corchorus olitorius HOM05D002263 ORTHO05D003537 5.3e-06 55.8 86 33.7
RcHm_v2.0_Chr1g0380651 Rosa chinensis HOM05D002263 ORTHO05D003537 9.0e-06 55.1 72 43.1


User provided reference genes

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