Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 6.7e-111 404.8 207 100.0
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 8.8e-79 298.1 201 76.1
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 1.2e-78 297.7 201 76.1
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 5.7e-78 295.4 201 76.6
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 7.5e-78 295.0 201 76.6
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 2.2e-77 293.5 201 76.1
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 2.8e-77 293.1 203 76.8
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 3.7e-77 292.7 201 74.6
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.7e-77 292.7 201 74.6
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 3.7e-77 292.7 201 74.6
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.9e-77 292.4 201 75.6
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 6.3e-77 292.0 201 75.6
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 1.1e-76 291.2 201 74.6
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.1e-76 291.2 201 74.1
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 1.4e-76 290.8 201 75.1
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.8e-76 290.4 201 75.1
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 1.8e-76 290.4 201 75.1
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 2.4e-76 290.0 201 75.1
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 2.4e-76 290.0 201 75.1
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.1e-76 289.7 201 74.6
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 7.0e-76 288.5 201 74.1
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 9.2e-76 288.1 203 73.9
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.2e-75 287.7 201 73.6
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 2.0e-75 287.0 201 73.1
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 2.0e-75 287.0 201 74.6
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 2.0e-75 287.0 201 73.1
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 2.7e-75 286.6 201 74.1
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 3.5e-75 286.2 201 74.6
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 4.5e-75 285.8 201 72.1
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 5.9e-75 285.4 201 73.1
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 5.9e-75 285.4 201 73.1
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 5.9e-75 285.4 201 73.1
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 5.9e-75 285.4 201 73.1
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 5.9e-75 285.4 201 73.6
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 5.9e-75 285.4 201 73.6
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 5.9e-75 285.4 201 73.1
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 5.9e-75 285.4 201 74.1
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 7.7e-75 285.0 201 72.1
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 7.7e-75 285.0 201 72.6
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 7.7e-75 285.0 200 74.5
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 1.0e-74 284.6 201 73.6
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 1.3e-74 284.3 201 72.1
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 2.3e-74 283.5 201 72.6
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 2.3e-74 283.5 201 73.1
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 2.3e-74 283.5 201 71.6
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 2.3e-74 283.5 201 71.6
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 2.9e-74 283.1 201 72.6
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 3.8e-74 282.7 201 72.6
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 3.8e-74 282.7 201 73.1
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 5.0e-74 282.3 201 71.6
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 6.6e-74 282.0 201 72.6
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 8.6e-74 281.6 201 71.1
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 8.6e-74 281.6 201 72.1
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 1.9e-73 280.4 201 72.1
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 2.5e-73 280.0 201 71.1
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 2.5e-73 280.0 201 71.6
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 3.3e-73 279.6 201 71.1
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 4.3e-73 279.3 201 70.1
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 4.3e-73 279.3 201 71.6
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.3e-73 279.3 201 71.6
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 5.6e-73 278.9 201 70.6
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 7.3e-73 278.5 204 71.1
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 7.3e-73 278.5 201 71.1
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 9.5e-73 278.1 201 70.6
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.2e-72 277.7 201 71.1
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.1e-72 276.9 201 71.1
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 2.8e-72 276.6 201 70.1
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 3.6e-72 276.2 201 70.6
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 3.6e-72 276.2 201 70.1
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 3.6e-72 276.2 201 72.1
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 4.7e-72 275.8 201 69.2
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.0e-71 274.6 201 68.7
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.0e-71 274.6 201 69.2
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.4e-71 274.2 201 70.1
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 2.3e-71 273.5 203 69.5
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.3e-71 273.5 192 74.0
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 3.0e-71 273.1 201 68.7
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 4.0e-71 272.7 201 70.1
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 6.8e-71 271.9 201 71.6
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 6.8e-71 271.9 207 67.6
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 8.9e-71 271.6 190 74.2
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.5e-70 270.8 210 68.1
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 2.0e-70 270.4 202 67.8
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 2.0e-70 270.4 202 67.8
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 2.0e-70 270.4 190 73.2
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 2.6e-70 270.0 202 67.8
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 2.6e-70 270.0 202 67.8
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 2.6e-70 270.0 202 67.8
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 3.4e-70 269.6 202 67.8
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 3.4e-70 269.6 196 74.0
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 7.5e-70 268.5 204 68.1
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 9.8e-70 268.1 201 71.6
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 1.4e-68 264.2 190 70.5
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 2.0e-67 260.4 201 66.2
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 3.5e-67 259.6 189 70.9
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 5.9e-67 258.8 190 70.0
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 7.8e-67 258.5 201 66.2
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.0e-66 258.1 200 68.0
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.3e-66 257.7 201 64.7
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 1.3e-66 257.7 201 66.2
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 3.0e-66 256.5 201 63.7
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 3.9e-66 256.1 277 55.2
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 3.9e-66 256.1 190 70.5
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 8.6e-66 255.0 201 65.7
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 4.0e-63 246.1 201 62.7
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 4.4e-62 242.7 260 51.2
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 4.4e-62 242.7 201 66.7
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 4.9e-61 239.2 185 68.6
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 8.3e-61 238.4 185 68.1
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 4.3e-57 226.1 201 59.2
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 2.8e-56 223.4 201 56.7
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 6.2e-56 222.2 173 68.8
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.1e-55 221.5 164 68.9
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 4.0e-55 219.5 157 74.5
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 4.0e-55 219.5 205 53.2
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 5.8e-54 215.7 191 63.9
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.6e-48 197.6 128 78.9
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 8.9e-47 191.8 201 52.2
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 4.9e-45 186.0 128 73.4
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 6.4e-45 185.7 139 69.8
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.0e-42 178.3 136 68.4
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.3e-42 177.9 201 51.2
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 2.5e-41 173.7 120 72.5
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 1.9e-36 157.5 162 58.0
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 3.5e-35 153.3 156 53.8
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 3.9e-34 149.8 110 69.1
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 5.6e-33 146.0 201 45.8
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 6.0e-27 125.9 160 48.1
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 9.9e-22 108.6 200 39.5
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.3e-21 108.2 74 71.6
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.7e-21 107.8 67 77.6
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 7.4e-17 92.4 63 71.4
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 2.2e-13 80.9 56 67.9
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.8e-13 80.1 49 75.5
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 2.1e-11 74.3 45 73.3
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 3.9e-10 70.1 91 47.3
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 5.3e-07 59.7 43 65.1
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 1.0e-05 55.5 49 57.1


User provided reference genes

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