Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 1.7e-83 312.8 178 100.0
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 3.3e-34 149.1 103 75.7
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 7.4e-34 147.9 103 75.7
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.6e-33 146.7 103 74.8
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 2.2e-33 146.4 103 72.8
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 4.8e-33 145.2 103 72.8
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.3e-33 144.8 115 69.6
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.1e-32 144.1 103 73.8
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.4e-31 139.0 103 70.9
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.0e-30 137.5 102 69.6
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.3e-30 137.1 126 62.7
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.7e-30 136.7 103 68.9
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.9e-30 136.0 126 61.9
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.9e-30 136.0 126 61.9
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 2.9e-30 136.0 126 61.9
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 2.9e-30 136.0 126 61.9
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.9e-30 136.0 129 60.5
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 2.9e-30 136.0 126 61.9
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 2.9e-30 136.0 126 62.7
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 2.9e-30 136.0 126 62.7
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 2.9e-30 136.0 126 61.9
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 3.8e-30 135.6 125 63.2
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.8e-30 135.6 125 62.4
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 3.8e-30 135.6 126 61.9
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 3.8e-30 135.6 126 61.9
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 5.0e-30 135.2 132 58.3
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 5.0e-30 135.2 126 61.1
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 5.0e-30 135.2 126 61.9
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 5.0e-30 135.2 126 61.1
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 6.5e-30 134.8 126 61.1
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 6.5e-30 134.8 126 61.1
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 6.5e-30 134.8 126 61.1
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 6.5e-30 134.8 126 61.1
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 6.5e-30 134.8 126 61.9
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 8.5e-30 134.4 125 61.6
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.1e-29 134.0 125 61.6
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 1.1e-29 134.0 126 61.1
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.1e-29 134.0 126 61.1
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 1.4e-29 133.7 126 61.1
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.9e-29 133.3 126 60.3
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.9e-29 133.3 126 61.1
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.9e-29 133.3 64 98.4
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 2.5e-29 132.9 132 56.8
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 2.5e-29 132.9 126 60.3
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 2.5e-29 132.9 126 61.1
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 3.2e-29 132.5 126 60.3
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 4.2e-29 132.1 126 58.7
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 4.2e-29 132.1 126 58.7
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 4.2e-29 132.1 126 58.7
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 4.2e-29 132.1 124 62.1
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 4.2e-29 132.1 126 60.3
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 4.2e-29 132.1 126 60.3
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 4.2e-29 132.1 126 58.7
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 5.5e-29 131.7 126 59.5
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 7.2e-29 131.3 126 61.1
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 7.2e-29 131.3 126 59.5
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.2e-29 131.3 125 60.0
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 9.3e-29 131.0 125 60.0
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 9.3e-29 131.0 127 58.3
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 9.3e-29 131.0 126 57.9
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 9.3e-29 131.0 126 60.3
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 9.3e-29 131.0 126 60.3
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 9.3e-29 131.0 126 59.5
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 9.3e-29 131.0 126 57.9
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 9.3e-29 131.0 126 60.3
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 9.3e-29 131.0 125 60.8
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 1.2e-28 130.6 116 62.9
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.2e-28 130.6 126 60.3
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 1.6e-28 130.2 124 58.9
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.6e-28 130.2 124 58.9
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 1.6e-28 130.2 126 59.5
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 2.1e-28 129.8 126 57.1
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 2.1e-28 129.8 128 58.6
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.7e-28 129.4 132 56.1
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.7e-28 129.4 123 61.0
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 3.6e-28 129.0 129 58.1
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-28 129.0 126 59.5
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-28 129.0 126 59.5
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-28 129.0 126 59.5
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 3.6e-28 129.0 117 63.2
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 3.6e-28 129.0 126 59.5
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 4.6e-28 128.6 126 58.7
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 4.6e-28 128.6 126 58.7
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 6.1e-28 128.3 63 93.7
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 6.1e-28 128.3 126 59.5
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 6.1e-28 128.3 126 58.7
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.0e-27 127.5 128 56.2
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.3e-27 127.1 126 57.1
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 3.0e-27 125.9 126 58.7
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 5.1e-27 125.2 126 55.6
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 6.7e-27 124.8 126 57.1
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 8.8e-27 124.4 167 49.1
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.5e-26 123.6 126 55.6
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-26 123.6 126 57.9
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 2.5e-26 122.9 136 54.4
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.5e-26 122.9 132 53.8
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 4.3e-26 122.1 126 54.8
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 5.7e-26 121.7 124 57.3
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 9.7e-26 120.9 63 88.9
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.7e-25 120.2 87 72.4
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.2e-25 119.8 63 88.9
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 6.9e-24 114.8 77 75.3
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.5e-23 113.6 87 67.8
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.5e-23 113.6 90 65.6
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 4.5e-23 112.1 98 61.2
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 5.9e-23 111.7 117 53.8
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 7.7e-23 111.3 90 65.6
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 1.9e-21 106.7 125 51.2
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.2e-21 105.5 97 56.7
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 2.0e-18 96.7 126 47.6
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.0e-18 96.7 125 46.4
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 9.7e-18 94.4 109 55.0
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.2e-17 93.2 73 63.0
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 2.4e-16 89.7 88 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 9.1e-16 87.8 86 55.8
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.2e-15 87.4 72 69.4
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 1.5e-15 87.0 109 47.7
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.5e-15 87.0 71 70.4
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 4.5e-15 85.5 85 51.8
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 5.9e-15 85.1 72 69.4
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 5.9e-15 85.1 85 52.9
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.7e-14 83.6 104 51.0
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 9.4e-13 77.8 56 66.1
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.7e-09 67.0 31 93.5
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 3.7e-09 65.9 88 40.9
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 8.2e-09 64.7 121 41.3
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.4e-08 63.9 30 90.0
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.4e-08 63.9 31 87.1
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 2.4e-08 63.2 30 86.7
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 5.3e-08 62.0 32 81.2
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.0e-08 61.6 30 86.7
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 9.1e-08 61.2 31 74.2
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 9.1e-08 61.2 103 42.7
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 1.6e-07 60.5 33 81.8
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 3.8e-06 55.8 83 37.3


User provided reference genes

Program Settings