Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17504 Sapria himalayana HOM05D003395 ORTHO05D004087 1.5e-77 292.7 142 100.0
SHI10456 Sapria himalayana HOM05D003395 ORTHO05D004087 4.1e-19 98.6 85 64.7
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 1.5e-16 90.1 84 61.9
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 1.5e-16 90.1 84 61.9
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 4.2e-16 88.6 84 60.7
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.2e-16 88.6 84 60.7
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.2e-16 88.6 84 60.7
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.2e-16 88.6 84 60.7
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 7.2e-16 87.8 84 59.5
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 9.5e-16 87.4 84 58.3
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 9.5e-16 87.4 84 59.5
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 9.5e-16 87.4 84 57.1
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 2.1e-15 86.3 84 57.1
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 2.8e-15 85.9 84 57.1
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 3.6e-15 85.5 84 57.1
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 3.6e-15 85.5 84 57.1
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 3.6e-15 85.5 84 57.1
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 4.7e-15 85.1 84 57.1
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 1.0e-14 84.0 84 54.8
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 1.0e-14 84.0 84 54.8
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 1.4e-14 83.6 84 56.0
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 1.4e-14 83.6 85 52.9
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 1.8e-14 83.2 84 56.0
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 1.8e-14 83.2 84 57.1
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 1.8e-14 83.2 85 54.1
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 1.8e-14 83.2 85 54.1
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 2.3e-14 82.8 84 57.1
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 4.0e-14 82.0 84 53.6
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 5.2e-14 81.6 85 52.9
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 5.2e-14 81.6 84 56.0
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 5.2e-14 81.6 88 51.1
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 6.8e-14 81.3 85 54.1
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 6.8e-14 81.3 85 54.1
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 6.8e-14 81.3 84 54.8
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 6.8e-14 81.3 84 54.8
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 6.8e-14 81.3 85 52.9
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 8.9e-14 80.9 84 53.6
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 8.9e-14 80.9 84 53.6
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 8.9e-14 80.9 84 54.8
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 8.9e-14 80.9 84 53.6
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 8.9e-14 80.9 84 54.8
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 8.9e-14 80.9 84 54.8
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 1.2e-13 80.5 79 54.4
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.2e-13 80.5 85 52.9
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 1.2e-13 80.5 84 54.8
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.5e-13 80.1 92 50.0
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 1.5e-13 80.1 84 53.6
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 2.0e-13 79.7 85 52.9
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 2.0e-13 79.7 84 52.4
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 2.0e-13 79.7 85 51.8
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 2.0e-13 79.7 84 53.6
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 2.0e-13 79.7 84 52.4
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 2.6e-13 79.3 83 55.4
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 3.4e-13 79.0 85 52.9
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 3.4e-13 79.0 84 53.6
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 3.4e-13 79.0 85 51.8
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 3.4e-13 79.0 85 51.8
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 3.4e-13 79.0 85 51.8
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 4.4e-13 78.6 84 51.2
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 4.4e-13 78.6 84 51.2
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 4.4e-13 78.6 78 53.8
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 5.7e-13 78.2 79 51.9
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 5.7e-13 78.2 78 53.8
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 5.7e-13 78.2 84 52.4
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 5.7e-13 78.2 78 53.8
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 5.7e-13 78.2 84 54.8
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 5.7e-13 78.2 84 54.8
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 7.5e-13 77.8 85 51.8
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 7.5e-13 77.8 88 52.3
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 7.5e-13 77.8 88 48.9
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 7.5e-13 77.8 78 53.8
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 9.8e-13 77.4 79 53.2
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 9.8e-13 77.4 85 51.8
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 9.8e-13 77.4 85 49.4
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 1.3e-12 77.0 84 52.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.3e-12 77.0 73 60.3
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 1.7e-12 76.6 85 49.4
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 1.7e-12 76.6 85 49.4
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.7e-12 76.6 85 49.4
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 1.7e-12 76.6 78 53.8
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.7e-12 76.6 85 49.4
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.7e-12 76.6 79 51.9
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 2.2e-12 76.3 85 52.9
BcaC07g40053 Brassica carinata HOM05D003395 ORTHO05D004087 2.2e-12 76.3 79 51.9
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 2.2e-12 76.3 79 51.9
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 2.2e-12 76.3 79 51.9
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 2.8e-12 75.9 84 50.0
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 2.8e-12 75.9 84 52.4
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 2.8e-12 75.9 84 52.4
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 3.7e-12 75.5 79 50.6
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 3.7e-12 75.5 84 52.4
Hma1.2p1_0556F.1_g178050 Hydrangea macrophylla HOM05D003395 ORTHO05D004087 3.7e-12 75.5 84 52.4
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 3.7e-12 75.5 85 47.1
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 4.9e-12 75.1 84 51.2
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 4.9e-12 75.1 84 51.2
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 4.9e-12 75.1 85 50.6
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 6.3e-12 74.7 89 48.3
BcaB06g29192 Brassica carinata HOM05D003395 ORTHO05D004087 8.3e-12 74.3 85 48.2
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 8.3e-12 74.3 85 48.2
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 8.3e-12 74.3 85 48.2
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 8.3e-12 74.3 85 48.2
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 8.3e-12 74.3 85 48.2
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 8.3e-12 74.3 85 48.2
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 8.3e-12 74.3 84 51.2
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 1.1e-11 73.9 79 50.6
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 1.1e-11 73.9 79 50.6
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 1.1e-11 73.9 84 50.0
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 1.1e-11 73.9 84 50.0
CAN.G624.32 Capsicum annuum HOM05D003395 ORTHO05D004087 1.8e-11 73.2 85 47.1
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 1.8e-11 73.2 84 51.2
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 2.4e-11 72.8 85 47.1
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 2.4e-11 72.8 84 51.2
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 2.4e-11 72.8 84 51.2
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 4.1e-11 72.0 85 49.4
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 7.0e-11 71.2 78 52.6
Eucgr.K01999 Eucalyptus grandis HOM05D003395 ORTHO05D004087 7.0e-11 71.2 75 50.7
CDE11G0192 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 1.2e-10 70.5 85 47.1
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 1.2e-10 70.5 78 51.3
CARHR167540 Cardamine hirsuta HOM05D003395 ORTHO05D004087 5.9e-10 68.2 73 49.3
Eucgr.K01765 Eucalyptus grandis HOM05D003395 ORTHO05D004087 7.8e-10 67.8 73 50.7
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 1.0e-09 67.4 85 44.7
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 1.3e-09 67.0 85 44.7
SHI20624 Sapria himalayana HOM05D003395 ORTHO05D004087 1.9e-08 63.2 100 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1001 Anthoceros agrestis HOM05D003395 ORTHO05D004087 7.3e-08 61.2 84 40.5
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 2.8e-07 59.3 87 41.4
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 3.6e-07 58.9 84 40.5
SHI37553 Sapria himalayana HOM05D000452 ORTHO05D037522 3.0e-06 55.8 37 67.6
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 5.2e-06 55.1 64 50.0
SHI40123 Sapria himalayana HOM05D003395 ORTHO05D037522 8.9e-06 54.3 37 64.9


User provided reference genes

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