Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI16560 Sapria himalayana HOM05D000104 ORTHO05D005769 4.9e-205 717.6 376 100.0
Manes.15G110200 Manihot esculenta HOM05D000104 ORTHO05D005769 1.7e-80 303.9 246 68.3
QL07p023509 Quercus lobata HOM05D000104 ORTHO05D005769 1.2e-78 297.7 229 71.2
Glyma.02G174100 Glycine max HOM05D000104 ORTHO05D005769 3.0e-77 293.1 293 59.7
Sabra01G0160500 Salix brachista HOM05D000104 ORTHO05D005769 8.7e-77 291.6 248 65.3
CiPaw.09G030900 Carya illinoinensis HOM05D000104 ORTHO05D005769 1.6e-75 287.3 231 69.3
Sabra03G0014100 Salix brachista HOM05D000104 ORTHO05D005769 8.2e-75 285.0 250 66.0
Dinv19274 Davidia involucrata HOM05D000104 ORTHO05D005769 1.4e-74 284.3 236 66.5
TWI23G0183 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 5.3e-74 282.3 270 61.9
PGR142G4395 Punica granatum HOM05D000104 ORTHO05D005769 1.2e-73 281.2 236 68.6
Potri.001G207700 Populus trichocarpa HOM05D000104 ORTHO05D005769 1.5e-73 280.8 248 64.9
Ciclev10010891m.g Citrus clementina HOM05D000104 ORTHO05D005769 2.0e-73 280.4 245 64.5
Ca_25705_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005769 2.6e-73 280.0 264 63.3
CANSAT64G1790 Cannabis sativa HOM05D000104 ORTHO05D005769 1.3e-72 277.7 230 69.1
Thecc.05G185200 Theobroma cacao HOM05D000104 ORTHO05D005769 1.3e-72 277.7 232 66.8
Rhsim03G0007000 Rhododendron simsii HOM05D000104 ORTHO05D005769 2.2e-72 276.9 243 63.0
Cc06_g16020 Coffea canephora HOM05D000104 ORTHO05D005769 8.5e-72 275.0 231 66.7
Gohir.A08G227300 Gossypium hirsutum HOM05D000104 ORTHO05D005769 3.2e-71 273.1 229 66.8
MELO3C009633.2 Cucumis melo HOM05D000104 ORTHO05D005769 5.5e-71 272.3 233 65.2
Dinv14287 Davidia involucrata HOM05D000104 ORTHO05D005769 5.5e-71 272.3 237 63.3
Gorai.004G264200 Gossypium raimondii HOM05D000104 ORTHO05D005769 5.5e-71 272.3 229 66.4
CsaV3_3G038900 Cucumis sativus L. HOM05D000104 ORTHO05D005769 9.4e-71 271.6 233 64.8
Peaxi162Scf00258g00431 Petunia axillaris HOM05D000104 ORTHO05D005769 9.4e-71 271.6 232 65.9
Duzib177G0813 Durio zibethinus HOM05D000104 ORTHO05D005769 1.6e-70 270.8 284 57.4
Nitab4.5_0003890g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005769 3.6e-70 269.6 232 64.7
GSVIVG01033511001 Vitis vinifera HOM05D000104 ORTHO05D005769 7.9e-70 268.5 274 57.7
Potri.003G022100 Populus trichocarpa HOM05D000104 ORTHO05D005769 1.4e-69 267.7 285 55.4
CAN.G570.8 Capsicum annuum HOM05D000104 ORTHO05D005769 1.8e-69 267.3 233 64.4
Glyma.09G112200 Glycine max HOM05D000104 ORTHO05D005769 2.3e-69 266.9 290 55.9
Sc11g0006160 Simmondsia chinensis HOM05D000104 ORTHO05D005769 2.3e-69 266.9 240 63.8
TWI14G1199 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 3.0e-69 266.5 226 66.4
Sopen03g015780 Solanum pennellii HOM05D000104 ORTHO05D005769 3.9e-69 266.2 233 62.7
VMungo0720G3110 Vigna mungo HOM05D000104 ORTHO05D005769 6.7e-69 265.4 285 55.8
Phvul.007G259200 Phaseolus vulgaris HOM05D000104 ORTHO05D005769 2.0e-68 263.8 241 63.1
Carub.0003s1217 Capsella rubella HOM05D000104 ORTHO05D005769 2.5e-68 263.5 230 60.9
MSTRG.19900 Avicennia marina HOM05D000104 ORTHO05D005769 3.3e-68 263.1 230 63.5
Solyc03g063220.2 Solanum lycopersicum HOM05D000104 ORTHO05D005769 4.3e-68 262.7 233 62.2
Lalb_Chr21g0316431 Lupinus albus HOM05D000104 ORTHO05D005769 1.7e-67 260.8 261 60.2
Migut.J01827 Erythranthe guttata HOM05D000104 ORTHO05D005769 2.8e-67 260.0 237 61.6
unitig_26.g9068 Utricularia gibba HOM05D000104 ORTHO05D005769 1.1e-66 258.1 245 58.4
Atru.chr8.1089 Acer truncatum HOM05D000104 ORTHO05D005769 3.1e-66 256.5 233 61.8
THA.LOC104826283 Tarenaya hassleriana HOM05D000104 ORTHO05D005769 3.1e-66 256.5 234 62.4
PSO528G0284 Papaver somniferum HOM05D000104 ORTHO05D005769 4.1e-66 256.1 275 55.6
Actinidia22030 Actinidia chinensis HOM05D000104 ORTHO05D005769 1.2e-65 254.6 230 60.9
Medtr1g053955 Medicago truncatula HOM05D000104 ORTHO05D005769 1.5e-65 254.2 278 57.2
PSO170G6710 Papaver somniferum HOM05D000104 ORTHO05D005769 1.5e-65 254.2 273 56.0
Lj5g0023468 Lotus japonicus HOM05D000104 ORTHO05D005769 7.7e-65 251.9 266 57.5
CiPaw.10G027000 Carya illinoinensis HOM05D000104 ORTHO05D005769 1.3e-64 251.1 233 62.7
RcHm_v2.0_Chr5g0025621 Rosa chinensis HOM05D000104 ORTHO05D005769 1.7e-64 250.8 231 61.9
Aqoxy4G02068 Aquilegia oxysepala HOM05D000104 ORTHO05D005769 6.5e-64 248.8 230 61.7
AT3G12810 Arabidopsis thaliana HOM05D000104 ORTHO05D005769 6.5e-64 248.8 232 58.6
AL3G24490 Arabidopsis lyrata HOM05D000104 ORTHO05D005769 8.5e-64 248.4 232 58.6
Thhalv10019875m.g Eutrema salsugineum HOM05D000104 ORTHO05D005769 1.4e-63 247.7 275 54.2
HPP92_024595 Vanilla planifolia HOM05D000104 ORTHO05D005769 1.4e-63 247.7 272 54.0
Nitab4.5_0000324g0220 Nicotiana tabacum HOM05D000104 ORTHO05D005769 1.9e-63 247.3 279 53.8
arahy.Tifrunner.gnm1.ann1.2E0FT9 Arachis hypogaea HOM05D000104 ORTHO05D005769 7.2e-63 245.4 229 63.3
TPR.G27751 Trifolium pratense HOM05D000104 ORTHO05D005769 9.4e-63 245.0 234 61.5
FvH4_3g15170 Fragaria vesca HOM05D000104 ORTHO05D005769 1.2e-62 244.6 262 55.7
arahy.Tifrunner.gnm1.ann1.52E2E0 Arachis hypogaea HOM05D000104 ORTHO05D005769 1.6e-62 244.2 229 62.9
BraA05t22469Z Brassica rapa HOM05D000104 ORTHO05D005769 1.6e-62 244.2 268 54.9
Gohir.D08G247700 Gossypium hirsutum HOM05D000104 ORTHO05D005769 1.6e-62 244.2 208 66.8
Prupe.4G135700 Prunus persica HOM05D000104 ORTHO05D005769 4.7e-62 242.7 233 60.9
Psat4g106680 Pisum sativum HOM05D000104 ORTHO05D005769 6.1e-62 242.3 264 57.2
A05p36660 Brassica napus HOM05D000104 ORTHO05D005769 1.0e-61 241.5 268 54.9
FAN25G3235 Fragaria x ananassa HOM05D000104 ORTHO05D005769 2.3e-61 240.4 228 61.0
BcaC05g29235 Brassica carinata HOM05D000104 ORTHO05D005769 3.0e-61 240.0 232 58.2
BolC5t34177H Brassica oleracea HOM05D000104 ORTHO05D005769 3.9e-61 239.6 233 58.8
Zm00001eb251100 Zea mays HOM05D000104 ORTHO05D005769 3.9e-61 239.6 231 58.0
MD10G1206600 Malus domestica HOM05D000104 ORTHO05D005769 5.1e-61 239.2 237 60.8
Aa31LG8G90 Aethionema arabicum HOM05D000104 ORTHO05D005769 8.8e-61 238.4 230 58.7
Nn5g28295 Nelumbo nucifera HOM05D000104 ORTHO05D005769 1.1e-60 238.0 206 67.0
Zm00001eb187690 Zea mays HOM05D000104 ORTHO05D005769 2.6e-60 236.9 231 57.1
C05p55090 Brassica napus HOM05D000104 ORTHO05D005769 3.3e-60 236.5 232 57.3
BcaB06g25509 Brassica carinata HOM05D000104 ORTHO05D005769 9.7e-60 235.0 232 57.8
MBI16_g14599_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 1.7e-59 234.2 233 59.2
ClCG10G017460 Citrullus lanatus HOM05D000104 ORTHO05D005769 1.1e-58 231.5 233 60.1
HanXRQChr01g0026921 Helianthus annuus HOM05D000104 ORTHO05D005769 1.8e-58 230.7 236 56.8
Eucgr.K01834 Eucalyptus grandis HOM05D000104 ORTHO05D005769 4.5e-57 226.1 237 56.1
ECA248G0087 Erigeron canadensis HOM05D000104 ORTHO05D005769 2.9e-56 223.4 230 57.4
HanXRQChr11g0348031 Helianthus annuus HOM05D000104 ORTHO05D005769 5.0e-56 222.6 235 54.9
ATR1152G044 Amborella trichopoda HOM05D000104 ORTHO05D005769 5.5e-55 219.2 242 52.1
TAR381G0643 Trochodendron aralioides HOM05D000104 ORTHO05D005769 9.4e-55 218.4 232 55.6
FAN11G3896 Fragaria x ananassa HOM05D000104 ORTHO05D005769 2.1e-54 217.2 227 57.3
SGA_v2.0_scaffold69G23071 Striga asiatica HOM05D000104 ORTHO05D005769 4.7e-54 216.1 251 53.4
Hund17598 Selenicereus undatus HOM05D000104 ORTHO05D005769 6.1e-54 215.7 273 49.8
CDE05G0740 Ceratophyllum demersum HOM05D000104 ORTHO05D005769 1.8e-53 214.2 183 65.0
Sed0012301 Sechium edule HOM05D000104 ORTHO05D005769 1.8e-53 214.2 233 56.7
CSS0012736 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005769 5.2e-53 212.6 258 50.4
FAN21G3997 Fragaria x ananassa HOM05D000104 ORTHO05D005769 5.2e-53 212.6 228 56.1
Ah.13g077720 Amaranthus hybridus HOM05D000104 ORTHO05D005769 1.1e-50 204.9 249 51.4
SGA_v2.0_scaffold105G30483 Striga asiatica HOM05D000104 ORTHO05D005769 1.4e-50 204.5 243 53.9
DCAR_006645 Daucus carota HOM05D000104 ORTHO05D005769 1.2e-49 201.4 231 53.2
Haze_19977 Corylus avellana HOM05D000104 ORTHO05D005769 2.0e-49 200.7 238 53.4
Pp3c10_13800 Physcomitrium patens HOM05D000104 ORTHO05D005769 2.7e-49 200.3 239 51.9
Oeu033742.2 Olea europaea HOM05D000104 ORTHO05D005769 4.2e-47 193.0 261 47.5
Mapoly0111s0052 Marchantia polymorpha HOM05D000104 ORTHO05D005769 2.3e-45 187.2 122 73.8
AUR62018509 Chenopodium quinoa HOM05D000104 ORTHO05D005769 2.0e-44 184.1 235 51.5
AagrBONN_evm.TU.Sc2ySwM_340.21 Anthoceros agrestis HOM05D000104 ORTHO05D005769 3.1e-42 176.8 139 62.6
Oeu063882.1 Olea europaea HOM05D000104 ORTHO05D005769 5.9e-41 172.6 125 68.8
EL10Ac3g07414 Beta vulgaris HOM05D000104 ORTHO05D005769 3.8e-40 169.9 245 48.6
SalBow6G1274 Salvia bowleyana HOM05D000104 ORTHO05D005769 5.0e-40 169.5 243 44.9
Lsat_1_v5_gn_1_55460 Lactuca sativa HOM05D000104 ORTHO05D005769 4.7e-38 162.9 236 43.6
MBI10_g44388_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 4.5e-33 146.4 234 42.7
MBI10_g00720_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 1.3e-32 144.8 90 76.7
Lj3C921T8 Lonicera japonica HOM05D000104 ORTHO05D005769 1.2e-28 131.7 144 56.9
Pp3c3_30220 Physcomitrium patens HOM05D000104 ORTHO05D005769 1.2e-28 131.7 178 50.6
Lj3C919G8 Lonicera japonica HOM05D000104 ORTHO05D005769 3.4e-28 130.2 149 54.4
AUR62020910 Chenopodium quinoa HOM05D000104 ORTHO05D005769 1.6e-25 121.3 236 40.7
CBR_g19274 Chara braunii HOM05D000104 ORTHO05D005769 1.3e-24 118.2 122 54.1
COL.COLO4_22907 Corchorus olitorius HOM05D000104 ORTHO05D005769 1.1e-23 115.2 275 33.1
Cpa.g.c39138 Carica papaya HOM05D000104 ORTHO05D005769 2.3e-21 107.5 63 76.2
PRCOL_00002928 Prasinoderma coloniale HOM05D000104 ORTHO05D005769 2.0e-20 104.4 230 34.3
MCO13G222 Micromonas commoda HOM05D000104 ORTHO05D005769 2.6e-20 104.0 226 37.2
MCO13G223 Micromonas commoda HOM05D000104 ORTHO05D005769 2.6e-20 104.0 226 37.2
Cre14.g618860 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D005769 4.4e-20 103.2 125 40.8
Lj3A919G40 Lonicera japonica HOM05D000104 ORTHO05D005769 2.9e-19 100.5 65 69.2
MBI10_g00718_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 1.5e-15 88.2 143 44.8
Lj3C921G6 Lonicera japonica HOM05D002180 ORTHO05D001339 9.8e-12 75.5 45 75.6
CANSAT01G2524 Cannabis sativa HOM05D002628 ORTHO05D002785 2.7e-09 67.4 99 40.4
Ciclev10018446m.g Citrus clementina HOM05D002628 ORTHO05D002785 6.0e-09 66.2 97 38.1
MD10G1163500 Malus domestica HOM05D002628 ORTHO05D002785 5.1e-08 63.2 97 40.2
Sabra14G0142700 Salix brachista HOM05D002628 ORTHO05D002785 5.1e-08 63.2 96 37.5
SGA_v2.0_scaffold6G03236 Striga asiatica HOM05D002628 ORTHO05D002785 5.1e-08 63.2 116 36.2
Pp3c7_10800 Physcomitrium patens HOM05D002628 ORTHO05D002785 6.6e-08 62.8 84 40.5
COL.COLO4_15677 Corchorus olitorius HOM05D002628 ORTHO05D002785 8.6e-08 62.4 96 38.5
Atru.chr5.2101 Acer truncatum HOM05D002628 ORTHO05D002785 1.1e-07 62.0 97 37.1
Gohir.A11G137900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 1.1e-07 62.0 98 39.8
MD05G1174400 Malus domestica HOM05D002628 ORTHO05D002785 1.1e-07 62.0 97 39.2
Manes.12G045400 Manihot esculenta HOM05D002628 ORTHO05D002785 1.1e-07 62.0 87 37.9
Potri.014G189900 Populus trichocarpa HOM05D002628 ORTHO05D002785 1.1e-07 62.0 96 36.5
MSTRG.12779 Avicennia marina HOM05D002628 ORTHO05D002785 1.9e-07 61.2 157 30.6
Gorai.007G155000 Gossypium raimondii HOM05D002628 ORTHO05D002785 1.9e-07 61.2 98 38.8
Prupe.8G201800 Prunus persica HOM05D002628 ORTHO05D002785 1.9e-07 61.2 100 38.0
CSS0048005 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 2.5e-07 60.8 98 38.8
Cpa.g.c33695 Carica papaya HOM05D000104 ORTHO05D005769 2.5e-07 60.8 81 48.1
Dinv12687 Davidia involucrata HOM05D002628 ORTHO05D002785 2.5e-07 60.8 100 39.0
SalBow3G0995 Salvia bowleyana HOM05D002628 ORTHO05D002785 2.5e-07 60.8 93 36.6
CBR_g6670 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-07 60.5 117 34.2
SGA_v2.0_scaffold3G01640 Striga asiatica HOM05D002628 ORTHO05D002785 3.3e-07 60.5 116 35.3
Thecc.01G224600 Theobroma cacao HOM05D002628 ORTHO05D002785 4.3e-07 60.1 99 36.4
CDE07G1586 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 5.6e-07 59.7 92 35.9
Duzib133G0258 Durio zibethinus HOM05D002628 ORTHO05D002785 5.6e-07 59.7 99 37.4
Duzib211G0579 Durio zibethinus HOM05D002628 ORTHO05D002785 5.6e-07 59.7 99 37.4
GSVIVG01028685001 Vitis vinifera HOM05D002628 ORTHO05D002785 5.6e-07 59.7 97 36.1
Gohir.D11G144700 Gossypium hirsutum HOM05D002628 ORTHO05D002785 7.3e-07 59.3 98 37.8
Migut.N00621 Erythranthe guttata HOM05D002628 ORTHO05D002785 1.2e-06 58.5 78 39.7
SalBow6G2694 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.2e-06 58.5 140 30.7
SalBow6G7039 Salvia bowleyana HOM05D002628 ORTHO05D002785 1.2e-06 58.5 140 30.7
Actinidia09479 Actinidia chinensis HOM05D002628 ORTHO05D002785 1.6e-06 58.2 94 38.3
Cpa.g.sc8.144 Carica papaya HOM05D002628 ORTHO05D002785 1.6e-06 58.2 97 35.1
Dinv19196 Davidia involucrata HOM05D002628 ORTHO05D002785 1.6e-06 58.2 99 37.4
Hma1.2p1_0784F.1_g217140 Hydrangea macrophylla HOM05D000104 ORTHO05D005769 1.6e-06 58.2 115 42.6
TWI36G1593 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 1.6e-06 58.2 84 40.5
TAR362G0009 Trochodendron aralioides HOM05D002628 ORTHO05D002785 1.6e-06 58.2 98 37.8
Aqoxy6G02008 Aquilegia oxysepala HOM05D002628 ORTHO05D002785 2.1e-06 57.8 98 34.7
CSS0046762 Camellia sinensis var. sinensis HOM05D002628 ORTHO05D002785 2.1e-06 57.8 100 36.0
CDE04G0039 Ceratophyllum demersum HOM05D002628 ORTHO05D002785 2.1e-06 57.8 92 35.9
Eucgr.K02162 Eucalyptus grandis HOM05D002628 ORTHO05D002785 2.1e-06 57.8 79 36.7
FvH4_2g18860 Fragaria vesca HOM05D002628 ORTHO05D002785 2.1e-06 57.8 99 36.4
FAN24G2878 Fragaria x ananassa HOM05D002628 ORTHO05D002785 2.1e-06 57.8 99 36.4
FAN27G0734 Fragaria x ananassa HOM05D002628 ORTHO05D002785 2.1e-06 57.8 99 36.4
Lj2C1130G3 Lonicera japonica HOM05D002628 ORTHO05D002785 2.1e-06 57.8 94 36.2
Nitab4.5_0001564g0060 Nicotiana tabacum HOM05D002628 ORTHO05D002785 2.1e-06 57.8 86 39.5
vmacro14750 Vaccinium macrocarpon HOM05D002628 ORTHO05D002785 2.1e-06 57.8 96 37.5
DCAR_012652 Daucus carota HOM05D002628 ORTHO05D002785 2.8e-06 57.4 90 34.4
Sc05g0002110 Simmondsia chinensis HOM05D002628 ORTHO05D002785 2.8e-06 57.4 95 36.8
Gohir.A08G194900 Gossypium hirsutum HOM05D002628 ORTHO05D002785 3.6e-06 57.0 104 35.6
Lj1g0019543 Lotus japonicus HOM05D002628 ORTHO05D002785 3.6e-06 57.0 98 33.7
Manes.13G047100 Manihot esculenta HOM05D002628 ORTHO05D002785 3.6e-06 57.0 84 36.9
Nitab4.5_0000045g0240 Nicotiana tabacum HOM05D002628 ORTHO05D002785 3.6e-06 57.0 79 39.2
Actinidia23721 Actinidia chinensis HOM05D002628 ORTHO05D002785 4.7e-06 56.6 99 36.4
MELO3C021029.2 Cucumis melo HOM05D002628 ORTHO05D002785 4.7e-06 56.6 90 36.7
DCAR_018575 Daucus carota HOM05D002628 ORTHO05D002785 4.7e-06 56.6 82 39.0
Eucgr.H00795 Eucalyptus grandis HOM05D002628 ORTHO05D002785 4.7e-06 56.6 84 39.3
Gohir.D08G212600 Gossypium hirsutum HOM05D002628 ORTHO05D002785 4.7e-06 56.6 102 35.3
Gorai.004G226000 Gossypium raimondii HOM05D002628 ORTHO05D002785 4.7e-06 56.6 102 35.3
BcaC02g09445 Brassica carinata HOM05D002628 ORTHO05D002785 6.2e-06 56.2 92 32.6
Rhsim01G0255500 Rhododendron simsii HOM05D002628 ORTHO05D002785 6.2e-06 56.2 97 36.1
RcHm_v2.0_Chr6g0284671 Rosa chinensis HOM05D002628 ORTHO05D002785 6.2e-06 56.2 92 37.0
Ca_26871_v3 Cicer arietinum L. HOM05D002628 ORTHO05D002785 8.1e-06 55.8 97 35.1
TWI75G1871 Tripterygium wilfordii HOM05D002628 ORTHO05D002785 8.1e-06 55.8 115 32.2


User provided reference genes

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