Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI15577 Sapria himalayana HOM05D003719 ORTHO05D004116 3.2e-53 211.5 105 100.0
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 1.1e-08 63.5 31 93.5
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 1.4e-08 63.2 34 82.4
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 4.1e-08 61.6 83 42.2
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 7.0e-08 60.8 31 83.9
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 9.2e-08 60.5 31 83.9
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 9.2e-08 60.5 31 83.9
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 9.2e-08 60.5 31 87.1
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 9.2e-08 60.5 31 87.1
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 1.2e-07 60.1 31 83.9
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 1.2e-07 60.1 31 83.9
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 1.2e-07 60.1 31 83.9
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 1.6e-07 59.7 31 83.9
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 2.0e-07 59.3 31 83.9
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 2.0e-07 59.3 31 80.6
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 2.0e-07 59.3 31 80.6
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 2.0e-07 59.3 31 83.9
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 2.0e-07 59.3 31 83.9
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 2.0e-07 59.3 31 83.9
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 2.0e-07 59.3 30 86.7
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 2.0e-07 59.3 31 80.6
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 2.0e-07 59.3 31 80.6
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 2.0e-07 59.3 31 83.9
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 2.7e-07 58.9 31 83.9
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 2.7e-07 58.9 31 83.9
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 3.5e-07 58.5 31 80.6
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 3.5e-07 58.5 31 80.6
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 3.5e-07 58.5 31 80.6
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 3.5e-07 58.5 83 39.8
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 3.5e-07 58.5 83 39.8
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 3.5e-07 58.5 31 80.6
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 4.5e-07 58.2 31 77.4
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 77.4
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 77.4
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 80.6
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 77.4
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 77.4
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 77.4
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 77.4
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 77.4
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 77.4
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 77.4
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 5.9e-07 57.8 30 83.3
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 80.6
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 80.6
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 77.4
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 5.9e-07 57.8 33 75.8
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 5.9e-07 57.8 33 75.8
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 5.9e-07 57.8 31 83.9
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 7.7e-07 57.4 31 80.6
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 7.7e-07 57.4 31 83.9
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 7.7e-07 57.4 31 80.6
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 7.7e-07 57.4 31 80.6
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 1.0e-06 57.0 35 74.3
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 1.0e-06 57.0 31 83.9
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 1.0e-06 57.0 31 83.9
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 1.0e-06 57.0 31 80.6
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 1.0e-06 57.0 31 80.6
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 1.0e-06 57.0 31 80.6
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 1.0e-06 57.0 30 83.3
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.3e-06 56.6 31 77.4
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.3e-06 56.6 31 77.4
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.3e-06 56.6 31 77.4
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 1.3e-06 56.6 31 77.4
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 1.3e-06 56.6 31 74.2
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 1.3e-06 56.6 31 77.4
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 1.7e-06 56.2 31 77.4
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 1.7e-06 56.2 31 77.4
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 1.7e-06 56.2 31 74.2
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.7e-06 56.2 37 62.2
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 1.7e-06 56.2 31 77.4
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 2.3e-06 55.8 31 74.2
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 2.3e-06 55.8 31 74.2
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 2.3e-06 55.8 31 74.2
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 2.3e-06 55.8 31 74.2
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 2.3e-06 55.8 31 74.2
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 2.3e-06 55.8 31 77.4
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 2.9e-06 55.5 31 77.4
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 2.9e-06 55.5 33 72.7
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 2.9e-06 55.5 31 77.4
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 2.9e-06 55.5 31 77.4
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 2.9e-06 55.5 31 74.2
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 2.9e-06 55.5 31 80.6
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 3.8e-06 55.1 33 72.7
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 3.8e-06 55.1 33 72.7
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 3.8e-06 55.1 31 74.2
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 5.0e-06 54.7 31 77.4
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 5.0e-06 54.7 31 77.4
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 5.0e-06 54.7 33 72.7
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 6.6e-06 54.3 31 74.2
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 6.6e-06 54.3 30 83.3
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 6.6e-06 54.3 31 74.2
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 8.6e-06 53.9 31 74.2
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 8.6e-06 53.9 31 74.2


User provided reference genes

Program Settings