Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13692 Sapria himalayana HOM05D001331 ORTHO05D001157 0.0e+00 1151.0 594 100.0
Manes.13G000048 Manihot esculenta HOM05D001331 ORTHO05D001157 6.1e-16 90.1 83 60.2
Manes.12G001000 Manihot esculenta HOM05D001331 ORTHO05D001157 1.8e-15 88.6 82 57.3
THA.LOC104820935 Tarenaya hassleriana HOM05D001331 ORTHO05D001157 4.0e-15 87.4 121 46.3
Potri.008G078500 Populus trichocarpa HOM05D001331 ORTHO05D001157 1.2e-14 85.9 204 36.8
THA.LOC104827169 Tarenaya hassleriana HOM05D001331 ORTHO05D001157 1.2e-14 85.9 187 37.4
A02p03440 Brassica napus HOM05D001331 ORTHO05D001157 2.0e-14 85.1 199 35.2
C03p08880 Brassica napus HOM05D001331 ORTHO05D001157 2.6e-14 84.7 119 46.2
BolC3t13383H Brassica oleracea HOM05D001331 ORTHO05D001157 2.6e-14 84.7 119 46.2
Gohir.A13G089345 Gossypium hirsutum HOM05D001331 ORTHO05D001157 3.3e-14 84.3 165 41.2
TAR365G0927 Trochodendron aralioides HOM05D001331 ORTHO05D001157 3.3e-14 84.3 70 62.9
TAR636G2893 Trochodendron aralioides HOM05D001331 ORTHO05D001157 3.3e-14 84.3 70 62.9
A03p07640 Brassica napus HOM05D001331 ORTHO05D001157 4.4e-14 84.0 119 46.2
Cc09_g04200 Coffea canephora HOM05D001331 ORTHO05D001157 4.4e-14 84.0 70 61.4
Dinv29073 Davidia involucrata HOM05D001331 ORTHO05D001157 7.5e-14 83.2 90 56.7
QL01p052315 Quercus lobata HOM05D001331 ORTHO05D001157 9.7e-14 82.8 70 64.3
AL6G27160 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 1.3e-13 82.4 119 47.1
arahy.Tifrunner.gnm1.ann1.AKP9LA Arachis hypogaea HOM05D001331 ORTHO05D001157 1.3e-13 82.4 114 46.5
arahy.Tifrunner.gnm1.ann1.RBIZ8B Arachis hypogaea HOM05D001331 ORTHO05D001157 1.3e-13 82.4 114 46.5
BcaB01g04995 Brassica carinata HOM05D001331 ORTHO05D001157 1.3e-13 82.4 119 45.4
Cpa.g.sc657.3 Carica papaya HOM05D001331 ORTHO05D001157 1.3e-13 82.4 71 63.4
CiPaw.08G111400 Carya illinoinensis HOM05D001331 ORTHO05D001157 1.3e-13 82.4 118 45.8
Gorai.002G148100 Gossypium raimondii HOM05D001331 ORTHO05D001157 1.3e-13 82.4 168 39.3
Prupe.6G366000 Prunus persica HOM05D001331 ORTHO05D001157 1.3e-13 82.4 84 57.1
Dinv17147 Davidia involucrata HOM05D001331 ORTHO05D001157 1.7e-13 82.0 188 37.8
Duzib128G1510 Durio zibethinus HOM05D001331 ORTHO05D001157 1.7e-13 82.0 179 37.4
PGR031G2697 Punica granatum HOM05D001331 ORTHO05D001157 1.7e-13 82.0 119 46.2
BraA03t10092Z Brassica rapa HOM05D001331 ORTHO05D001157 2.2e-13 81.6 119 45.4
CANSAT64G1741 Cannabis sativa HOM05D001331 ORTHO05D001157 2.2e-13 81.6 116 48.3
CARHR197040 Cardamine hirsuta HOM05D001331 ORTHO05D001157 2.2e-13 81.6 119 46.2
Nn7g37491 Nelumbo nucifera HOM05D001331 ORTHO05D001157 2.2e-13 81.6 131 42.0
THA.LOC104802428 Tarenaya hassleriana HOM05D001331 ORTHO05D001157 2.8e-13 81.3 178 37.6
Carub.0006s1446 Capsella rubella HOM05D001331 ORTHO05D001157 3.7e-13 80.9 144 39.6
Nn1g09520 Nelumbo nucifera HOM05D001331 ORTHO05D001157 3.7e-13 80.9 70 62.9
PSO017G0053 Papaver somniferum HOM05D001331 ORTHO05D001157 3.7e-13 80.9 72 58.3
PSO675G1754 Papaver somniferum HOM05D001331 ORTHO05D001157 3.7e-13 80.9 72 58.3
BcaC04g18906 Brassica carinata HOM05D001331 ORTHO05D001157 4.8e-13 80.5 119 45.4
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 4.8e-13 80.5 119 45.4
BolC9t58913H Brassica oleracea HOM05D001331 ORTHO05D001157 4.8e-13 80.5 119 45.4
BraA10t44346Z Brassica rapa HOM05D001331 ORTHO05D001157 4.8e-13 80.5 119 45.4
Ah.06g195190 Amaranthus hybridus HOM05D001331 ORTHO05D001157 6.3e-13 80.1 178 33.1
BraA02t05316Z Brassica rapa HOM05D001331 ORTHO05D001157 6.3e-13 80.1 118 44.1
Cfa006230 Carpinus fangiana HOM05D001331 ORTHO05D001157 6.3e-13 80.1 70 61.4
BcaB08g36861 Brassica carinata HOM05D001331 ORTHO05D001157 8.2e-13 79.7 186 33.9
Ciclev10014064m.g Citrus clementina HOM05D001331 ORTHO05D001157 8.2e-13 79.7 190 35.8
DCAR_002143 Daucus carota HOM05D001331 ORTHO05D001157 8.2e-13 79.7 69 60.9
Duzib177G1162 Durio zibethinus HOM05D001331 ORTHO05D001157 8.2e-13 79.7 172 39.5
MD00G1016700 Malus domestica HOM05D001331 ORTHO05D001157 8.2e-13 79.7 84 57.1
vmacro10422 Vaccinium macrocarpon HOM05D001331 ORTHO05D001157 8.2e-13 79.7 119 45.4
Gohir.D13G118300 Gossypium hirsutum HOM05D001331 ORTHO05D001157 1.1e-12 79.3 171 37.4
Medtr7g080575 Medicago truncatula HOM05D001331 ORTHO05D001157 1.1e-12 79.3 70 61.4
Rhsim09G0127700 Rhododendron simsii HOM05D001331 ORTHO05D001157 1.1e-12 79.3 71 63.4
TWI36G0320 Tripterygium wilfordii HOM05D001331 ORTHO05D001157 1.1e-12 79.3 127 41.7
AT5G16270 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 1.8e-12 78.6 119 45.4
BcaC03g18483 Brassica carinata HOM05D001331 ORTHO05D001157 1.8e-12 78.6 119 45.4
BolC2t06746H Brassica oleracea HOM05D001331 ORTHO05D001157 1.8e-12 78.6 86 53.5
Thhalv10012533m.g Eutrema salsugineum HOM05D001331 ORTHO05D001157 1.8e-12 78.6 120 45.0
SalBow1G2526 Salvia bowleyana HOM05D001331 ORTHO05D001157 1.8e-12 78.6 83 51.8
SalBow1G4268 Salvia bowleyana HOM05D001331 ORTHO05D001157 1.8e-12 78.6 83 51.8
SalBow1G6493 Salvia bowleyana HOM05D001331 ORTHO05D001157 1.8e-12 78.6 83 51.8
SalBow1G8000 Salvia bowleyana HOM05D001331 ORTHO05D001157 1.8e-12 78.6 83 51.8
TWI75G0046 Tripterygium wilfordii HOM05D001331 ORTHO05D001157 1.8e-12 78.6 70 62.9
Aqoxy2G04168 Aquilegia oxysepala HOM05D001331 ORTHO05D001157 2.4e-12 78.2 70 60.0
GSVIVG01004000001 Vitis vinifera HOM05D001331 ORTHO05D001157 2.4e-12 78.2 71 62.0
CiPaw.07G084600 Carya illinoinensis HOM05D001331 ORTHO05D001157 3.1e-12 77.8 70 60.0
Ca_08018_v3 Cicer arietinum L. HOM05D001331 ORTHO05D001157 3.1e-12 77.8 70 60.0
Aa31LG11G13350 Aethionema arabicum HOM05D001331 ORTHO05D001157 4.1e-12 77.4 241 31.5
Gohir.D08G248100 Gossypium hirsutum HOM05D001331 ORTHO05D001157 4.1e-12 77.4 82 56.1
Gorai.004G264700 Gossypium raimondii HOM05D001331 ORTHO05D001157 4.1e-12 77.4 82 56.1
Oeu057537.1 Olea europaea HOM05D001331 ORTHO05D001157 4.1e-12 77.4 69 59.4
Sp6g27890 Schrenkiella parvula HOM05D001331 ORTHO05D001157 4.1e-12 77.4 120 43.3
Sed0000727 Sechium edule HOM05D001331 ORTHO05D001157 4.1e-12 77.4 178 34.8
Sabra08G0058300 Salix brachista HOM05D001331 ORTHO05D001157 5.3e-12 77.0 219 34.7
Thecc.05G113300 Theobroma cacao HOM05D001331 ORTHO05D001157 7.0e-12 76.6 182 37.4
MSTRG.343 Avicennia marina HOM05D001331 ORTHO05D001157 9.1e-12 76.3 70 55.7
VMungo1383G1445 Vigna mungo HOM05D001331 ORTHO05D001157 9.1e-12 76.3 87 50.6
Zm00001eb365670 Zea mays HOM05D001331 ORTHO05D001157 9.1e-12 76.3 95 48.4
Actinidia34705 Actinidia chinensis HOM05D001331 ORTHO05D001157 1.2e-11 75.9 117 45.3
BcaNung02228 Brassica carinata HOM05D001331 ORTHO05D001157 1.2e-11 75.9 86 54.7
DCAR_031598 Daucus carota HOM05D001331 ORTHO05D001157 1.2e-11 75.9 69 60.9
FvH4_6g00010 Fragaria vesca HOM05D001331 ORTHO05D001157 1.2e-11 75.9 82 54.9
FAN14G0128 Fragaria x ananassa HOM05D001331 ORTHO05D001157 1.2e-11 75.9 82 54.9
Glyma.09G247600 Glycine max HOM05D001331 ORTHO05D001157 1.2e-11 75.9 70 57.1
Gohir.A08G227800 Gossypium hirsutum HOM05D001331 ORTHO05D001157 1.2e-11 75.9 82 54.9
Gorai.013G132700 Gossypium raimondii HOM05D001331 ORTHO05D001157 1.2e-11 75.9 86 53.5
Lj1g0022047 Lotus japonicus HOM05D001331 ORTHO05D001157 1.2e-11 75.9 120 45.0
Oeu001222.1 Olea europaea HOM05D001331 ORTHO05D001157 1.2e-11 75.9 122 41.0
Zm00001eb144600 Zea mays HOM05D001331 ORTHO05D001157 1.2e-11 75.9 133 41.4
CDE09G0405 Ceratophyllum demersum HOM05D001331 ORTHO05D001157 1.6e-11 75.5 116 44.8
MSTRG.9237 Avicennia marina HOM05D001331 ORTHO05D001157 2.0e-11 75.1 83 49.4
Sc16g0010700 Simmondsia chinensis HOM05D001331 ORTHO05D001157 2.0e-11 75.1 82 54.9
FAN02G0753 Fragaria x ananassa HOM05D001331 ORTHO05D001157 2.7e-11 74.7 82 53.7
Glyma.18G245000 Glycine max HOM05D001331 ORTHO05D001157 2.7e-11 74.7 70 55.7
Gohir.A13G115300 Gossypium hirsutum HOM05D001331 ORTHO05D001157 2.7e-11 74.7 87 54.0
Sed0001975 Sechium edule HOM05D001331 ORTHO05D001157 2.7e-11 74.7 70 58.6
TPR.G22749 Trifolium pratense HOM05D001331 ORTHO05D001157 2.7e-11 74.7 70 58.6
C02p08240 Brassica napus HOM05D001331 ORTHO05D001157 3.5e-11 74.3 86 53.5
ClCG11G011030 Citrullus lanatus HOM05D001331 ORTHO05D001157 3.5e-11 74.3 113 42.5
Solyc11g008740.2 Solanum lycopersicum HOM05D001331 ORTHO05D001157 3.5e-11 74.3 70 57.1
Sopen11g004520 Solanum pennellii HOM05D001331 ORTHO05D001157 3.5e-11 74.3 70 57.1
CDE02G1510 Ceratophyllum demersum HOM05D001331 ORTHO05D001157 4.5e-11 73.9 121 41.3
MELO3C008766.2 Cucumis melo HOM05D001331 ORTHO05D001157 4.5e-11 73.9 70 57.1
CsaV3_2G009440 Cucumis sativus L. HOM05D001331 ORTHO05D001157 4.5e-11 73.9 70 57.1
Lalb_Chr01g0020641 Lupinus albus HOM05D001331 ORTHO05D001157 4.5e-11 73.9 70 55.7
Lalb_Chr03g0038031 Lupinus albus HOM05D001331 ORTHO05D001157 4.5e-11 73.9 72 55.6
Oeu034713.1 Olea europaea HOM05D001331 ORTHO05D001157 4.5e-11 73.9 70 55.7
Eucgr.B01452 Eucalyptus grandis HOM05D001331 ORTHO05D001157 5.9e-11 73.6 70 57.1
RhsimUnG0038200 Rhododendron simsii HOM05D000002 ORTHO05D000047 5.9e-11 73.6 66 63.6
HPP92_013535 Vanilla planifolia HOM05D001331 ORTHO05D001157 5.9e-11 73.6 69 58.0
Atru.chr10.160 Acer truncatum HOM05D001331 ORTHO05D001157 7.7e-11 73.2 83 54.2
EL10Ac4g10033 Beta vulgaris HOM05D001331 ORTHO05D001157 7.7e-11 73.2 125 40.8
CAN.G691.14 Capsicum annuum HOM05D001331 ORTHO05D001157 7.7e-11 73.2 70 54.3
Psat3g101880 Pisum sativum HOM05D001331 ORTHO05D001157 7.7e-11 73.2 70 58.6
Os01g0897800 Oryza sativa ssp. japonica HOM05D001331 ORTHO05D001157 1.0e-10 72.8 121 40.5
Phvul.008G051500 Phaseolus vulgaris HOM05D001331 ORTHO05D001157 1.0e-10 72.8 70 57.1
Potri.010G178600 Populus trichocarpa HOM05D001331 ORTHO05D001157 1.0e-10 72.8 491 25.1
Duzib106G0054 Durio zibethinus HOM05D001331 ORTHO05D001157 1.3e-10 72.4 73 60.3
HanXRQChr07g0194791 Helianthus annuus HOM05D001331 ORTHO05D001157 1.3e-10 72.4 70 57.1
Nitab4.5_0000743g0180 Nicotiana tabacum HOM05D001331 ORTHO05D001157 1.3e-10 72.4 83 50.6
SalBow3G1815 Salvia bowleyana HOM05D001331 ORTHO05D001157 1.3e-10 72.4 70 55.7
Hund21934 Selenicereus undatus HOM05D001331 ORTHO05D001157 1.7e-10 72.0 128 41.4
CSS0037703 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 2.2e-10 71.6 71 59.2
unitig_0.g376 Utricularia gibba HOM05D001331 ORTHO05D001157 2.2e-10 71.6 119 39.5
Lsat_1_v5_gn_2_108360 Lactuca sativa HOM05D003813 ORTHO05D004557 5.0e-10 70.5 64 62.5
ECA238G2397 Erigeron canadensis HOM05D001331 ORTHO05D001157 6.5e-10 70.1 104 44.2
Migut.F01839 Erythranthe guttata HOM05D001331 ORTHO05D001157 6.5e-10 70.1 91 47.3
HanXRQChr14g0454801 Helianthus annuus HOM05D001331 ORTHO05D001157 6.5e-10 70.1 112 43.8
AUR62000263 Chenopodium quinoa HOM05D001331 ORTHO05D001157 1.1e-09 69.3 79 50.6
Peaxi162Scf00254g00420 Petunia axillaris HOM05D001331 ORTHO05D001157 1.1e-09 69.3 66 57.6
Pp3c6_2600 Physcomitrium patens HOM05D001331 ORTHO05D001157 1.5e-09 68.9 85 47.1
Lsat_1_v5_gn_9_70441 Lactuca sativa HOM05D001331 ORTHO05D001157 1.9e-09 68.6 110 40.0
Pp3c6_2850 Physcomitrium patens HOM05D001331 ORTHO05D001157 7.2e-09 66.6 87 49.4
ATR0743G257 Amborella trichopoda HOM05D001331 ORTHO05D001157 4.7e-08 63.9 106 41.5
Lsat_1_v5_gn_4_13380 Lactuca sativa HOM05D001331 ORTHO05D001157 1.0e-07 62.8 42 71.4
SEGI_17466 Sequoiadendron giganteum HOM05D001331 ORTHO05D001157 4.0e-07 60.8 68 45.6
Mapoly0027s0147 Marchantia polymorpha HOM05D001331 ORTHO05D001157 8.8e-07 59.7 80 46.2
Gohir.D13G093600 Gossypium hirsutum HOM05D001331 ORTHO05D001157 1.2e-06 59.3 152 36.2
AUR62006611 Chenopodium quinoa HOM05D001331 ORTHO05D001157 2.6e-06 58.2 67 49.3
SalBow1G4060 Salvia bowleyana HOM05D001331 ORTHO05D001157 2.6e-06 58.2 65 50.8
Sabra10G0137000 Salix brachista HOM05D001331 ORTHO05D001157 3.4e-06 57.8 90 43.3
FAN03G2484 Fragaria x ananassa HOM05D001331 ORTHO05D001157 4.4e-06 57.4 100 37.0
RcHm_v2.0_Chr1g0314311 Rosa chinensis HOM05D001331 ORTHO05D001157 4.4e-06 57.4 100 37.0
FvH4_7g00520 Fragaria vesca HOM05D001331 ORTHO05D001157 5.7e-06 57.0 90 38.9
FAN10G4137 Fragaria x ananassa HOM05D001331 ORTHO05D001157 5.7e-06 57.0 90 38.9
Zm00001eb412050 Zea mays HOM05D001331 ORTHO05D001157 7.5e-06 56.6 115 34.8
FAN06G3408 Fragaria x ananassa HOM05D001331 ORTHO05D001157 9.8e-06 56.2 90 38.9
Oeu013649.1 Olea europaea HOM05D001331 ORTHO05D001157 9.8e-06 56.2 76 39.5


User provided reference genes

Program Settings