Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 2.1e-103 379.0 190 100.0
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 7.6e-53 211.1 190 57.9
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 2.9e-52 209.1 188 58.0
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 1.4e-51 206.8 188 56.4
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 4.2e-51 205.3 188 56.4
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 4.2e-51 205.3 188 56.4
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 5.4e-51 204.9 188 56.4
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.6e-50 203.4 188 57.4
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.1e-50 203.0 188 54.8
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.7e-50 202.6 188 55.9
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 3.5e-50 202.2 188 55.9
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 4.6e-50 201.8 188 55.3
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 6.0e-50 201.4 188 55.9
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 7.9e-50 201.1 188 55.9
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 7.9e-50 201.1 188 56.4
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 7.9e-50 201.1 188 55.3
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 7.9e-50 201.1 188 55.9
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.3e-49 200.3 188 55.3
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.7e-49 199.9 188 55.9
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.7e-49 199.9 188 56.9
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 2.3e-49 199.5 188 53.7
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.0e-49 199.1 188 56.4
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 5.1e-49 198.4 188 56.4
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 5.1e-49 198.4 188 56.9
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.1e-49 198.4 188 54.3
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 6.6e-49 198.0 188 54.3
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 6.6e-49 198.0 188 53.7
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.7e-49 197.6 188 55.9
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.1e-48 197.2 188 53.2
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.5e-48 196.1 188 53.7
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 3.3e-48 195.7 188 55.3
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 3.3e-48 195.7 188 55.9
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 4.3e-48 195.3 188 53.7
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.6e-48 194.9 188 53.2
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.6e-47 193.4 188 54.3
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.1e-47 193.0 188 54.8
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.8e-47 192.6 188 55.3
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 4.8e-47 191.8 188 53.7
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 8.1e-47 191.0 187 52.9
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 1.4e-46 190.3 189 51.9
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 1.4e-46 190.3 188 52.7
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.4e-46 190.3 188 52.1
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.4e-46 190.3 188 52.1
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.4e-46 190.3 188 52.1
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.4e-46 189.5 188 52.1
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 4.0e-46 188.7 188 51.6
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 4.0e-46 188.7 188 52.7
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 4.0e-46 188.7 188 52.7
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 5.3e-46 188.3 188 51.1
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 5.3e-46 188.3 188 50.5
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 5.3e-46 188.3 188 51.1
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 6.9e-46 188.0 188 50.5
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 9.0e-46 187.6 188 53.7
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.0e-46 187.6 188 53.2
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 9.0e-46 187.6 188 54.3
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 9.0e-46 187.6 188 53.7
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 1.2e-45 187.2 188 52.1
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.2e-45 187.2 188 52.1
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.2e-45 187.2 188 53.7
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.0e-45 186.4 188 52.7
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 2.0e-45 186.4 188 51.1
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 3.4e-45 185.7 188 51.6
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 3.4e-45 185.7 188 51.1
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.5e-45 185.3 188 52.7
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 9.9e-45 184.1 188 51.6
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 9.9e-45 184.1 188 52.1
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 1.3e-44 183.7 188 49.5
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 1.7e-44 183.3 188 51.1
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 2.9e-44 182.6 188 49.5
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 3.8e-44 182.2 187 51.9
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 3.8e-44 182.2 188 51.1
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 4.9e-44 181.8 188 51.1
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 6.4e-44 181.4 188 50.5
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 6.4e-44 181.4 188 50.5
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 6.4e-44 181.4 188 51.1
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.1e-43 180.6 188 51.6
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.4e-43 180.3 188 51.1
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 2.4e-43 179.5 182 50.0
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.4e-43 179.5 178 53.9
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 3.2e-43 179.1 187 50.8
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 4.2e-43 178.7 189 51.3
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 5.5e-43 178.3 188 50.5
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 7.1e-43 177.9 188 50.5
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 9.3e-43 177.6 188 51.1
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.2e-42 177.2 180 51.7
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.6e-42 176.8 189 50.3
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.6e-42 176.8 188 50.0
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 2.1e-42 176.4 189 50.8
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 2.7e-42 176.0 188 50.5
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 1.0e-41 174.1 186 50.5
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.3e-41 173.7 189 50.3
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.8e-41 173.3 188 50.0
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 2.3e-41 172.9 188 50.5
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 3.0e-41 172.6 188 48.4
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 8.7e-41 171.0 180 51.7
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 3.3e-40 169.1 189 49.2
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 3.3e-40 169.1 188 49.5
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 1.6e-39 166.8 188 48.4
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 1.6e-39 166.8 178 49.4
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.6e-39 166.8 189 48.1
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 2.1e-39 166.4 168 51.8
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.1e-39 166.4 185 51.4
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 4.8e-39 165.2 247 40.9
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 4.8e-39 165.2 188 46.8
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 6.2e-39 164.9 158 52.5
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 3.1e-38 162.5 183 48.1
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 3.1e-38 162.5 187 47.1
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.0e-38 162.2 185 50.8
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 6.9e-38 161.4 168 50.0
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 2.6e-37 159.5 187 46.0
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 5.8e-37 158.3 188 46.3
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.1e-35 154.1 162 49.4
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.1e-35 154.1 188 45.7
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 4.2e-35 152.1 189 43.4
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 5.5e-35 151.8 189 43.9
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 5.5e-35 151.8 189 43.9
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.2e-34 150.6 189 43.4
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.7e-34 149.4 160 47.5
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 4.3e-32 142.1 183 44.3
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.6e-31 140.2 143 52.4
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.2e-29 134.0 190 40.5
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.3e-28 130.6 134 52.2
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.2e-28 129.8 138 50.0
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 8.4e-28 127.9 179 37.4
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.2e-27 125.9 139 48.9
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 5.5e-27 125.2 126 51.6
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.2e-26 124.0 141 43.3
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 4.6e-26 122.1 141 44.0
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 3.7e-23 112.5 141 46.1
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 9.0e-22 107.8 177 39.5
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.7e-20 103.6 79 64.6
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 7.2e-19 98.2 164 35.4
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.2e-18 97.4 95 53.7
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 2.3e-17 93.2 163 36.2
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.7e-17 91.7 61 65.6
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.7e-17 91.7 61 65.6
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 1.5e-16 90.5 59 69.5
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 6.9e-14 81.6 165 35.2
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.7e-13 78.2 66 59.1
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 2.2e-12 76.6 177 31.1
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 3.6e-10 69.3 85 45.9
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 7.9e-10 68.2 66 53.0
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 1.1e-06 57.8 155 26.5
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 3.1e-06 56.2 164 26.8


User provided reference genes

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