Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 7.2e-89 330.5 159 100.0
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 7.1e-12 74.7 51 66.7
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 4.6e-11 72.0 51 62.7
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 5.1e-10 68.6 51 62.7
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 6.6e-10 68.2 51 60.8
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 8.7e-10 67.8 51 56.9
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 2.5e-09 66.2 51 58.8
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.5e-09 66.2 53 60.4
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 4.3e-09 65.5 138 32.6
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 4.3e-09 65.5 52 61.5
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 4.3e-09 65.5 38 71.1
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 5.6e-09 65.1 39 71.8
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 9.6e-09 64.3 36 75.0
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 9.6e-09 64.3 51 58.8
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.3e-08 63.9 51 49.0
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.3e-08 63.9 37 75.7
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 1.6e-08 63.5 51 58.8
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 2.1e-08 63.2 51 58.8
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 2.1e-08 63.2 51 58.8
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 2.8e-08 62.8 48 50.0
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 2.8e-08 62.8 36 72.2
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 3.6e-08 62.4 35 80.0
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 4.8e-08 62.0 51 58.8
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 4.8e-08 62.0 51 58.8
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 4.8e-08 62.0 51 54.9
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 4.8e-08 62.0 35 74.3
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 4.8e-08 62.0 37 70.3
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 6.2e-08 61.6 37 73.0
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 6.2e-08 61.6 37 70.3
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 6.2e-08 61.6 37 70.3
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 8.1e-08 61.2 35 74.3
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 8.1e-08 61.2 46 54.3
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 8.1e-08 61.2 56 53.6
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 8.1e-08 61.2 37 70.3
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 8.1e-08 61.2 52 59.6
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 1.4e-07 60.5 37 64.9
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 1.4e-07 60.5 38 63.2
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.4e-07 60.5 37 67.6
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.4e-07 60.5 38 63.2
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.4e-07 60.5 38 63.2
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.4e-07 60.5 37 70.3
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.4e-07 60.5 52 50.0
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 1.8e-07 60.1 37 62.2
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.8e-07 60.1 37 64.9
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 2.4e-07 59.7 37 64.9
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.4e-07 59.7 37 64.9
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.4e-07 59.7 37 64.9
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.4e-07 59.7 37 64.9
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 2.4e-07 59.7 51 56.9
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 2.4e-07 59.7 37 64.9
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 2.4e-07 59.7 37 64.9
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 3.1e-07 59.3 38 63.2
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 3.1e-07 59.3 37 64.9
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 3.1e-07 59.3 51 52.9
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 4.0e-07 58.9 35 74.3
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 4.0e-07 58.9 35 71.4
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 4.0e-07 58.9 35 71.4
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 4.0e-07 58.9 38 65.8
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 5.3e-07 58.5 38 63.2
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 5.3e-07 58.5 51 56.9
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 6.9e-07 58.2 37 64.9
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 6.9e-07 58.2 51 51.0
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 9.0e-07 57.8 35 68.6
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 9.0e-07 57.8 38 65.8
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.5e-06 57.0 38 60.5
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 1.5e-06 57.0 37 62.2
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.5e-06 57.0 33 69.7
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 2.0e-06 56.6 37 64.9
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.0e-06 56.6 51 51.0
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 2.0e-06 56.6 35 65.7
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 2.6e-06 56.2 37 62.2
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 2.6e-06 56.2 38 57.9
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 2.6e-06 56.2 51 51.0
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 2.6e-06 56.2 51 51.0
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 2.6e-06 56.2 51 51.0
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.6e-06 56.2 33 72.7
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 3.4e-06 55.8 38 60.5
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.5e-06 55.5 33 69.7
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 4.5e-06 55.5 33 72.7
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 5.8e-06 55.1 53 52.8
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.6e-06 54.7 38 57.9
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 7.6e-06 54.7 37 56.8


User provided reference genes

Program Settings