Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 6.4e-131 470.7 229 100.0
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 1.2e-73 280.4 184 73.4
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.7e-73 279.3 184 72.8
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.7e-73 279.3 184 72.8
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.6e-73 278.9 184 73.4
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 4.7e-73 278.5 184 71.7
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.0e-72 277.3 184 71.7
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.8e-72 276.6 184 72.3
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.2e-72 275.0 184 72.3
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 6.7e-72 274.6 184 71.7
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 1.1e-71 273.9 184 70.7
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 1.1e-71 273.9 184 70.7
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 1.5e-71 273.5 184 70.1
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 2.6e-71 272.7 184 70.1
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 3.3e-71 272.3 184 70.1
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 4.4e-71 271.9 184 70.7
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 4.4e-71 271.9 184 70.7
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 4.4e-71 271.9 184 70.7
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 5.7e-71 271.6 184 69.6
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 5.7e-71 271.6 184 70.1
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 7.4e-71 271.2 184 70.1
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 7.4e-71 271.2 183 69.9
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 9.7e-71 270.8 184 69.6
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.3e-70 270.4 184 69.6
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.7e-70 270.0 184 69.0
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 2.2e-70 269.6 184 69.6
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.2e-70 269.6 184 69.0
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.8e-70 269.2 184 70.1
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 2.8e-70 269.2 184 70.1
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 3.7e-70 268.9 184 69.6
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 3.7e-70 268.9 184 69.6
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.7e-70 268.9 184 68.5
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 3.7e-70 268.9 184 69.6
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 3.7e-70 268.9 184 70.1
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 4.8e-70 268.5 183 69.4
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 4.8e-70 268.5 187 68.4
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 4.8e-70 268.5 183 69.4
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 6.3e-70 268.1 184 69.0
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.1e-69 267.3 184 70.1
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.4e-69 266.9 183 69.4
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 1.8e-69 266.5 182 69.2
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.8e-69 266.5 184 68.5
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.8e-69 266.5 184 69.6
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 1.8e-69 266.5 182 69.2
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 2.4e-69 266.2 184 69.6
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 3.1e-69 265.8 184 69.6
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 4.1e-69 265.4 184 70.1
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 4.1e-69 265.4 184 66.8
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.1e-69 265.4 184 66.8
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.1e-69 265.4 184 66.8
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 4.1e-69 265.4 191 67.5
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 4.1e-69 265.4 184 69.6
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 5.3e-69 265.0 184 67.9
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.3e-69 265.0 184 67.9
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.3e-69 265.0 184 67.9
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 5.3e-69 265.0 184 70.7
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 7.0e-69 264.6 184 67.9
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 7.0e-69 264.6 184 66.8
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 9.1e-69 264.2 184 66.8
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 9.1e-69 264.2 184 66.8
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 9.1e-69 264.2 184 69.6
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 9.1e-69 264.2 184 68.5
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.2e-68 263.8 184 66.3
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.2e-68 263.8 184 67.9
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.2e-68 263.8 184 67.9
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 1.2e-68 263.8 185 68.6
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.2e-68 263.8 184 67.9
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 1.6e-68 263.5 184 68.5
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.0e-68 263.1 184 68.5
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.6e-68 262.7 184 65.8
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 2.6e-68 262.7 184 67.9
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 4.5e-68 261.9 182 69.8
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 5.9e-68 261.5 182 67.6
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 7.7e-68 261.2 184 66.8
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 1.0e-67 260.8 184 67.9
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.3e-67 260.4 184 67.9
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.7e-67 260.0 182 69.8
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.7e-67 260.0 184 66.3
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 2.2e-67 259.6 182 67.0
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 6.5e-67 258.1 184 66.8
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 6.5e-67 258.1 184 66.8
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 6.5e-67 258.1 182 68.1
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 8.5e-67 257.7 182 68.7
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 8.5e-67 257.7 182 68.7
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 8.5e-67 257.7 182 68.7
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 8.5e-67 257.7 182 68.7
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 8.5e-67 257.7 182 68.7
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.5e-66 256.9 184 67.9
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.5e-66 256.9 184 66.3
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.5e-66 256.9 182 68.1
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.5e-66 256.1 184 66.3
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 9.4e-66 254.2 182 68.1
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 9.4e-66 254.2 183 63.9
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.2e-65 253.8 185 64.9
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.6e-65 253.4 182 67.6
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.6e-65 253.4 182 67.6
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.6e-65 253.4 182 68.1
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 2.1e-65 253.1 184 64.7
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 2.1e-65 253.1 183 65.0
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 6.1e-65 251.5 182 65.4
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 8.0e-65 251.1 182 65.9
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.0e-64 250.8 182 67.0
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.0e-64 250.8 184 63.6
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.4e-64 250.4 185 64.9
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.8e-64 250.0 182 65.4
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 2.3e-64 249.6 183 66.1
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 4.0e-64 248.8 182 65.4
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 2.6e-63 246.1 185 64.3
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 3.4e-63 245.7 185 63.8
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 4.4e-63 245.4 184 61.4
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 5.7e-63 245.0 185 63.8
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 2.8e-62 242.7 184 63.6
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 6.3e-62 241.5 182 62.6
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 6.3e-62 241.5 229 55.0
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.1e-61 240.7 184 59.2
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 1.2e-60 237.3 184 61.4
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 1.6e-60 236.9 184 61.4
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 4.5e-60 235.3 186 61.8
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.7e-59 233.4 184 60.9
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 4.2e-58 228.8 220 53.6
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 2.1e-57 226.5 184 62.5
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 4.0e-56 222.2 156 66.0
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 4.0e-56 222.2 153 68.0
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 4.8e-54 215.3 153 66.7
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 7.0e-53 211.5 182 58.2
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 9.1e-53 211.1 184 59.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 9.1e-53 211.1 156 62.2
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 1.6e-49 200.3 189 56.1
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 2.8e-49 199.5 182 56.0
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 6.8e-48 194.9 139 64.7
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.3e-46 190.7 173 57.2
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 2.2e-46 189.9 109 90.8
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.1e-45 187.6 184 53.3
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.2e-44 184.1 139 60.4
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.0e-44 183.3 153 57.5
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.7e-43 180.3 179 55.3
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 4.7e-41 172.2 151 57.0
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 6.1e-41 171.8 187 46.5
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 6.1e-41 171.8 184 51.1
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.6e-39 166.4 102 73.5
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 4.4e-39 165.6 159 53.5
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.2e-38 163.3 102 70.6
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 7.0e-37 158.3 133 58.6
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 7.0e-37 158.3 102 68.6
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 9.2e-37 157.9 99 71.7
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.2e-36 157.5 100 72.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 2.3e-35 153.3 100 69.0
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.2e-33 147.5 135 57.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 1.4e-32 144.1 159 49.1
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 5.4e-29 132.1 105 57.1
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 2.7e-28 129.8 107 61.7
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 5.6e-26 122.1 82 69.5
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.2e-25 120.9 68 83.8
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 6.8e-24 115.2 101 56.4
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 6.8e-24 115.2 82 69.5
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 4.9e-22 109.0 100 57.0
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.4e-21 107.5 82 65.9
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.2e-13 79.7 52 71.2
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 5.4e-13 79.0 107 43.9
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 2.1e-09 67.0 128 37.5


User provided reference genes

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