Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 0.0e+00 1316.6 685 100.0
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 7.4e-191 671.4 712 53.8
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 9.7e-191 671.0 695 56.5
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 2.4e-189 666.4 699 53.9
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 3.6e-185 652.5 698 55.0
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.3e-182 644.0 695 54.2
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 5.9e-180 635.2 703 54.1
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 6.5e-179 631.7 698 53.6
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 9.4e-178 627.9 697 53.8
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.6e-177 627.1 701 53.5
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 7.9e-177 624.8 695 53.1
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.8e-176 621.3 700 53.3
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.1e-175 620.9 694 53.6
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 1.5e-175 620.5 714 52.7
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.4e-175 619.0 694 53.3
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 9.7e-175 617.8 696 53.2
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.3e-174 617.5 704 52.3
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.6e-172 609.8 693 52.1
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 5.9e-172 608.6 694 52.4
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.9e-172 608.6 700 52.7
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 7.7e-172 608.2 700 53.3
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.7e-171 607.1 701 52.6
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 2.9e-171 606.3 692 52.7
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.9e-171 606.3 693 52.1
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 5.0e-171 605.5 694 52.4
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 8.5e-171 604.7 697 52.8
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.9e-170 603.6 695 52.1
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.5e-170 603.2 695 51.8
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.5e-170 603.2 694 51.4
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 4.2e-170 602.4 699 51.5
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 9.4e-170 601.3 697 52.1
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.6e-169 600.5 702 52.3
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.7e-169 599.7 693 51.9
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 6.1e-169 598.6 695 52.1
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 3.9e-168 595.9 696 51.6
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 6.7e-168 595.1 682 52.9
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 8.8e-168 594.7 698 51.1
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 1.1e-167 594.3 726 50.4
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 7.4e-167 591.7 699 52.4
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 3.7e-166 589.3 687 51.4
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 3.7e-166 589.3 698 51.1
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 3.1e-165 586.3 694 51.4
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.2e-164 584.3 714 50.4
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 5.9e-164 582.0 695 52.1
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.0e-163 581.3 687 49.8
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 8.5e-163 578.2 689 51.4
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 4.2e-162 575.9 714 51.4
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 5.5e-162 575.5 696 51.0
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 5.5e-162 575.5 694 50.6
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 9.4e-162 574.7 695 51.7
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 2.1e-161 573.5 703 49.6
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 3.6e-161 572.8 692 49.9
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 8.0e-161 571.6 691 49.9
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.0e-160 571.2 695 50.1
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 6.7e-160 568.5 712 51.1
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 2.0e-159 567.0 701 51.2
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.6e-159 566.6 719 49.0
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 9.7e-159 564.7 694 49.0
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.3e-158 564.3 694 51.6
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 1.8e-157 560.5 690 49.4
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.8e-157 560.5 693 51.1
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 2.4e-157 560.1 699 50.1
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.1e-157 559.7 691 49.2
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 4.1e-157 559.3 692 50.4
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 9.1e-157 558.1 691 49.3
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 4.5e-156 555.8 704 49.0
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 7.7e-156 555.1 688 51.2
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 2.9e-155 553.1 702 49.7
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 3.8e-155 552.7 690 50.1
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 5.0e-155 552.4 690 48.6
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 5.0e-155 552.4 697 49.9
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 8.5e-155 551.6 691 50.1
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 1.5e-154 550.8 691 49.8
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 1.2e-153 547.7 690 50.3
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 4.7e-153 545.8 706 48.6
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 4.7e-153 545.8 703 49.2
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 4.7e-153 545.8 695 48.8
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 6.1e-153 545.4 691 49.8
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 8.0e-153 545.0 691 50.4
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 8.0e-153 545.0 696 48.7
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 3.0e-152 543.1 690 49.4
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 3.0e-152 543.1 690 49.4
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 4.0e-152 542.7 689 48.8
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.5e-151 540.8 695 47.2
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 4.4e-151 539.3 691 49.5
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 4.4e-151 539.3 699 50.1
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 5.7e-151 538.9 690 49.3
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 2.8e-150 536.6 691 49.1
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 6.3e-150 535.4 696 48.4
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 3.1e-149 533.1 700 48.3
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 5.4e-149 532.3 693 48.9
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.2e-148 531.2 696 48.1
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 2.0e-148 530.4 708 48.2
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 4.5e-148 529.3 706 48.0
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 4.5e-148 529.3 697 47.8
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 5.9e-148 528.9 696 47.6
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 5.9e-148 528.9 699 47.8
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 6.1e-145 518.8 691 47.3
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 4.0e-144 516.2 687 47.3
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.2e-143 514.6 698 48.4
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 2.0e-143 513.8 697 46.1
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 2.6e-143 513.5 692 46.7
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 3.4e-143 513.1 695 47.5
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.4e-141 507.7 699 47.2
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 1.8e-141 507.3 687 47.0
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 4.1e-141 506.1 695 46.8
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.5e-138 496.9 697 46.8
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.2e-137 494.6 680 46.0
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 6.1e-137 492.3 701 46.9
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 6.1e-137 492.3 703 46.2
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.4e-136 491.1 679 45.7
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 1.8e-136 490.7 692 46.8
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 3.1e-136 490.0 706 45.0
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 4.0e-136 489.6 695 46.3
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 7.5e-135 485.3 699 44.3
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 3.7e-134 483.0 850 40.0
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 2.4e-133 480.3 693 45.6
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 9.2e-133 478.4 698 46.0
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 2.0e-132 477.2 691 45.9
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 6.0e-132 475.7 697 45.9
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 2.6e-127 460.3 624 47.4
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 4.4e-127 459.5 381 64.6
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 5.8e-127 459.1 669 46.9
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 6.2e-121 439.1 720 44.0
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.8e-119 432.6 371 63.9
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 6.4e-118 429.1 375 61.6
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 6.4e-118 429.1 375 61.6
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.1e-112 411.8 714 40.3
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 5.4e-109 399.4 321 67.9
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 2.7e-108 397.1 318 67.6
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.9e-99 366.7 678 41.4
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 1.7e-86 324.7 608 38.7
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 2.9e-86 323.9 685 37.1
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 2.7e-84 317.4 729 35.1
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 5.7e-82 309.7 544 41.7
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 1.2e-76 292.0 521 37.6
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 2.5e-74 284.3 729 34.0
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.3e-70 271.9 611 37.8
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 5.9e-63 246.5 378 43.7
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.8e-59 232.6 392 41.1
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 5.3e-56 223.4 380 40.0
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 7.0e-56 223.0 479 35.3
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 4.0e-51 207.2 451 33.5
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 6.7e-51 206.5 461 34.7
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.5e-50 205.3 150 71.3
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 2.0e-42 178.3 374 35.8
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 3.2e-37 161.0 224 42.4
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 8.8e-35 152.9 155 51.0
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.4e-32 144.8 164 51.2
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 7.2e-29 133.3 163 50.3
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.1e-24 119.4 381 26.0
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 2.7e-23 114.8 69 82.6
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.5e-23 114.4 318 32.4
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 4.6e-23 114.0 359 27.0
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.0e-22 112.8 69 79.7
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 1.3e-22 112.5 309 33.0
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 3.9e-22 110.9 222 34.7
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 8.0e-20 103.2 337 29.7
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.4e-19 102.4 82 59.8
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 4.0e-19 100.9 458 25.3
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 7.5e-18 96.7 57 86.0
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 5.4e-16 90.5 62 71.0
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 6.0e-15 87.0 51 82.4
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 6.6e-14 83.6 51 78.4
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 9.5e-13 79.7 56 73.2
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 1.9e-08 65.5 382 22.8
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 7.8e-07 60.1 39 69.2
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 1.0e-06 59.7 97 43.3


User provided reference genes

Program Settings