Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10457 Sapria himalayana HOM05D003395 ORTHO05D004087 7.3e-179 630.6 346 100.0
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 2.7e-88 329.7 289 65.1
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 1.0e-87 327.8 289 65.1
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 6.6e-87 325.1 289 63.7
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 1.9e-86 323.6 289 63.7
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 9.5e-86 321.2 289 64.4
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 9.5e-86 321.2 289 64.0
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 2.3e-84 316.6 289 63.7
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 6.8e-84 315.1 289 62.6
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 8.9e-84 314.7 289 63.0
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 8.9e-84 314.7 290 63.8
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 1.7e-82 310.5 289 63.0
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 2.2e-82 310.1 289 61.6
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 2.2e-82 310.1 289 64.0
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 2.2e-82 310.1 289 61.6
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 2.2e-82 310.1 289 62.3
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 2.9e-82 309.7 285 62.8
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 2.9e-82 309.7 289 60.6
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 2.9e-82 309.7 289 60.6
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 3.7e-82 309.3 289 63.0
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 6.4e-82 308.5 289 60.6
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 3.2e-81 306.2 285 60.7
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 4.1e-81 305.8 285 61.1
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 5.4e-81 305.4 285 60.7
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 5.4e-81 305.4 281 62.3
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 7.0e-81 305.1 289 60.2
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.2e-80 304.3 285 62.8
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 1.2e-80 304.3 285 62.8
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 1.6e-80 303.9 285 60.7
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 1.6e-80 303.9 289 60.2
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 2.0e-80 303.5 289 61.6
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 2.0e-80 303.5 290 61.4
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 3.5e-80 302.8 289 60.9
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 3.5e-80 302.8 288 60.8
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.0e-80 302.0 289 60.6
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.0e-79 301.2 289 60.6
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 1.0e-79 301.2 288 61.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.3e-79 300.8 289 60.6
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 1.7e-79 300.4 289 60.6
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 1.7e-79 300.4 289 59.5
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 2.3e-79 300.1 289 59.5
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 3.0e-79 299.7 310 58.1
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 3.9e-79 299.3 289 61.2
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 3.9e-79 299.3 289 59.5
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 3.9e-79 299.3 289 59.5
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 5.0e-79 298.9 289 60.6
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 5.0e-79 298.9 310 58.1
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 5.0e-79 298.9 285 58.6
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 8.6e-79 298.1 289 59.9
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 1.1e-78 297.7 289 60.9
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 1.5e-78 297.4 289 60.2
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 1.9e-78 297.0 289 59.5
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 4.3e-78 295.8 285 58.6
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 4.3e-78 295.8 289 58.8
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 5.6e-78 295.4 289 59.5
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 9.5e-78 294.7 289 59.2
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 9.5e-78 294.7 288 61.1
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 9.5e-78 294.7 285 58.6
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 9.5e-78 294.7 285 58.9
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 1.2e-77 294.3 290 59.7
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 1.2e-77 294.3 288 58.3
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 1.2e-77 294.3 285 58.9
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 1.2e-77 294.3 309 57.3
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 1.2e-77 294.3 309 57.3
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 1.6e-77 293.9 285 58.6
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.6e-77 293.9 289 59.5
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 1.6e-77 293.9 289 58.5
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 1.6e-77 293.9 289 59.2
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 3.6e-77 292.7 288 60.4
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 4.7e-77 292.4 285 58.6
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 6.2e-77 292.0 289 59.2
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 8.0e-77 291.6 288 60.1
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 1.4e-76 290.8 288 60.1
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 1.4e-76 290.8 289 58.5
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 1.4e-76 290.8 290 60.0
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 1.8e-76 290.4 289 59.2
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 2.3e-76 290.0 288 60.1
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 2.3e-76 290.0 290 57.6
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 3.1e-76 289.7 288 59.7
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 3.1e-76 289.7 288 59.7
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 3.1e-76 289.7 315 55.9
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 4.0e-76 289.3 289 58.1
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 5.2e-76 288.9 288 59.7
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 5.2e-76 288.9 288 59.4
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 5.2e-76 288.9 285 58.6
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 6.8e-76 288.5 293 58.7
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 6.8e-76 288.5 289 58.5
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 1.2e-75 287.7 290 59.3
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 1.5e-75 287.3 289 58.1
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 1.5e-75 287.3 288 59.0
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 2.6e-75 286.6 287 57.1
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 4.4e-75 285.8 288 59.4
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 9.8e-75 284.6 288 59.4
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 1.7e-74 283.9 289 58.5
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 2.2e-74 283.5 290 58.6
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 6.4e-74 282.0 288 59.0
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 8.3e-74 281.6 288 56.2
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.4e-73 280.8 327 53.2
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 2.4e-73 280.0 289 58.8
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 2.4e-73 280.0 289 58.8
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 3.2e-73 279.6 289 58.1
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 7.0e-73 278.5 289 57.8
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 7.0e-73 278.5 289 57.8
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 1.2e-72 277.7 358 48.9
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 1.6e-72 277.3 288 58.7
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 1.0e-71 274.6 288 57.6
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 3.9e-71 272.7 288 55.6
CARHR167550 Cardamine hirsuta HOM05D003395 ORTHO05D004087 5.1e-71 272.3 288 57.6
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 3.3e-70 269.6 289 58.5
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 9.5e-70 268.1 345 49.9
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 9.5e-70 268.1 284 56.7
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 5.2e-68 262.3 289 52.2
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 2.1e-64 250.4 288 52.8
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 9.5e-62 241.5 284 52.8
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 1.2e-59 234.6 293 46.8
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 1.0e-55 221.5 286 45.8
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 3.8e-50 203.0 139 80.6
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 5.4e-49 199.1 296 44.3
CANSAT80G0779 Cannabis sativa HOM05D003395 ORTHO05D004087 7.8e-48 195.3 152 70.4
Haze_07832 Corylus avellana HOM05D003395 ORTHO05D004087 8.4e-42 175.3 182 56.0
Sabra18G0065400 Salix brachista HOM05D003395 ORTHO05D004087 2.4e-41 173.7 145 70.3
Gohir.A03G107600 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.3e-39 167.9 233 48.9
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 1.8e-39 167.5 303 40.3
SEGI_38355 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 5.1e-39 166.0 199 47.2
Eucgr.K01999 Eucalyptus grandis HOM05D003395 ORTHO05D004087 3.3e-38 163.3 177 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1001 Anthoceros agrestis HOM05D003395 ORTHO05D004087 2.1e-32 144.1 205 46.3
BcaB06g29192 Brassica carinata HOM05D003395 ORTHO05D004087 7.9e-32 142.1 179 50.3
BcaC07g40053 Brassica carinata HOM05D003395 ORTHO05D004087 2.1e-29 134.0 178 46.1
MD00G1107400 Malus domestica HOM05D003395 ORTHO05D004087 7.6e-27 125.6 155 49.7
CAN.G4526.1 Capsicum annuum HOM05D003395 ORTHO05D004087 8.4e-26 122.1 129 52.7
CAN.G624.32 Capsicum annuum HOM05D003395 ORTHO05D004087 8.4e-26 122.1 129 52.7
Lsat_1_v5_gn_4_163840 Lactuca sativa HOM05D003395 ORTHO05D004087 2.3e-23 114.0 179 44.1
CDE11G0192 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 3.3e-22 110.2 129 48.8
Oeu023124.1 Olea europaea HOM05D004521 ORTHO05D010236 4.3e-22 109.8 82 70.7
SEGI_24724 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 1.3e-21 108.2 82 69.5
Lsat_1_v5_gn_1_62780 Lactuca sativa HOM05D003395 ORTHO05D004087 1.2e-19 101.7 179 42.5
Hma1.2p1_0556F.1_g178050 Hydrangea macrophylla HOM05D003395 ORTHO05D004087 1.3e-18 98.2 79 62.0
CDE11G0660 Ceratophyllum demersum HOM05D003395 ORTHO05D010236 3.8e-18 96.7 65 78.5
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.2e-17 93.6 122 52.5
BcaB06g29194 Brassica carinata HOM05D003395 ORTHO05D020046 9.7e-14 82.0 75 66.7
Thhalv10005836m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 4.1e-12 76.6 72 51.4
Cre17.g717800 Chlamydomonas reinhardtii HOM05D003395 ORTHO05D004087 1.5e-11 74.7 132 37.9
Lsat_1_v5_gn_4_147041 Lactuca sativa HOM05D003395 ORTHO05D004087 1.1e-09 68.6 71 52.1
FvH4_4g17140 Fragaria vesca HOM05D003395 ORTHO05D020046 2.5e-09 67.4 74 58.1
FAN12G3185 Fragaria x ananassa HOM05D003395 ORTHO05D020046 3.6e-08 63.5 74 56.8
FAN12G1311 Fragaria x ananassa HOM05D003395 ORTHO05D020046 1.1e-06 58.5 70 55.7


User provided reference genes

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