Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10437 Sapria himalayana HOM05D006373 ORTHO05D008145 4.8e-185 651.0 316 100.0
SHI25519 Sapria himalayana HOM05D006373 ORTHO05D000610 1.7e-25 120.9 91 71.4
SHI36026 Sapria himalayana HOM05D000616 ORTHO05D000233 8.5e-17 92.0 62 77.4
Actinidia33446 Actinidia chinensis HOM05D006373 ORTHO05D008145 3.0e-14 83.6 93 50.5
Haze_15231 Corylus avellana HOM05D006373 ORTHO05D008145 3.4e-13 80.1 95 51.6
Manes.01G262700 Manihot esculenta HOM05D006373 ORTHO05D008145 1.7e-12 77.8 93 50.5
DCAR_025171 Daucus carota HOM05D006373 ORTHO05D008145 2.2e-12 77.4 93 50.5
FAN06G0518 Fragaria x ananassa HOM05D006373 ORTHO05D008145 2.2e-12 77.4 93 48.4
Cfa004178 Carpinus fangiana HOM05D006373 ORTHO05D008145 3.7e-12 76.6 95 50.5
Ca_07867_v3 Cicer arietinum L. HOM05D006373 ORTHO05D008145 3.7e-12 76.6 93 49.5
Migut.B01684 Erythranthe guttata HOM05D006373 ORTHO05D008145 3.7e-12 76.6 93 47.3
QL08p050698 Quercus lobata HOM05D006373 ORTHO05D008145 3.7e-12 76.6 93 51.6
Glyma.09G264000 Glycine max HOM05D006373 ORTHO05D008145 4.9e-12 76.3 94 48.9
Dinv32419 Davidia involucrata HOM05D006373 ORTHO05D008145 8.3e-12 75.5 93 48.4
FvH4_7g12990 Fragaria vesca HOM05D006373 ORTHO05D008145 1.1e-11 75.1 93 47.3
Nitab4.5_0004550g0010 Nicotiana tabacum HOM05D006373 ORTHO05D008145 1.1e-11 75.1 93 49.5
CiPaw.02G024800 Carya illinoinensis HOM05D006373 ORTHO05D008145 1.4e-11 74.7 93 48.4
Cc02_g37210 Coffea canephora HOM05D006373 ORTHO05D008145 1.8e-11 74.3 93 49.5
Lalb_Chr01g0021121 Lupinus albus HOM05D006373 ORTHO05D008145 2.4e-11 73.9 93 47.3
vmacro20974 Vaccinium macrocarpon HOM05D006373 ORTHO05D008145 2.4e-11 73.9 91 49.5
Rhsim01G0155400 Rhododendron simsii HOM05D006373 ORTHO05D008145 3.1e-11 73.6 93 47.3
GSVIVG01027599001 Vitis vinifera HOM05D006373 ORTHO05D008145 3.1e-11 73.6 93 50.5
CANSAT56G4468 Cannabis sativa HOM05D006373 ORTHO05D008145 5.4e-11 72.8 93 49.5
FAN01G2011 Fragaria x ananassa HOM05D006373 ORTHO05D008145 5.4e-11 72.8 93 47.3
arahy.Tifrunner.gnm1.ann1.TZ2CHG Arachis hypogaea HOM05D006373 ORTHO05D008145 7.0e-11 72.4 94 50.0
arahy.Tifrunner.gnm1.ann1.V9KE7M Arachis hypogaea HOM05D006373 ORTHO05D008145 7.0e-11 72.4 94 50.0
CSS0009190 Camellia sinensis var. sinensis HOM05D006373 ORTHO05D008145 7.0e-11 72.4 93 47.3
FAN03G2318 Fragaria x ananassa HOM05D006373 ORTHO05D008145 9.1e-11 72.0 93 46.2
Lj7A521G13 Lonicera japonica HOM05D006373 ORTHO05D008145 9.1e-11 72.0 93 47.3
MD07G1125800 Malus domestica HOM05D006373 ORTHO05D008145 9.1e-11 72.0 93 47.3
Lj1g0016698 Lotus japonicus HOM05D006373 ORTHO05D008145 1.6e-10 71.2 93 46.2
Medtr7g076290 Medicago truncatula HOM05D006373 ORTHO05D008145 1.6e-10 71.2 93 47.3
RcHm_v2.0_Chr1g0352131 Rosa chinensis HOM05D006373 ORTHO05D008145 1.6e-10 71.2 93 47.3
COL.COLO4_06964 Corchorus olitorius HOM05D006373 ORTHO05D008145 2.7e-10 70.5 93 46.2
Prupe.2G154000 Prunus persica HOM05D006373 ORTHO05D008145 2.7e-10 70.5 93 45.2
Duzib133G1433 Durio zibethinus HOM05D006373 ORTHO05D008145 3.5e-10 70.1 93 46.2
Glyma.18G228000 Glycine max HOM05D006373 ORTHO05D008145 3.5e-10 70.1 94 45.7
Gohir.D08G150600 Gossypium hirsutum HOM05D006373 ORTHO05D008145 5.9e-10 69.3 93 47.3
Peaxi162Scf00021g00529 Petunia axillaris HOM05D006373 ORTHO05D008145 5.9e-10 69.3 94 47.9
Potri.014G077300 Populus trichocarpa HOM05D006373 ORTHO05D008145 5.9e-10 69.3 94 46.8
PGR042G0347 Punica granatum HOM05D006373 ORTHO05D008145 5.9e-10 69.3 94 46.8
PGSC0003DMG400017049 Solanum tuberosum HOM05D006373 ORTHO05D008145 5.9e-10 69.3 93 47.3
TWI59G0120 Tripterygium wilfordii HOM05D006373 ORTHO05D008145 7.7e-10 68.9 93 45.2
MSTRG.20789 Avicennia marina HOM05D006373 ORTHO05D008145 1.0e-09 68.6 93 46.2
Oeu059230.1 Olea europaea HOM05D006373 ORTHO05D008145 1.0e-09 68.6 91 46.2
Thecc.01G369000 Theobroma cacao HOM05D006373 ORTHO05D008145 1.0e-09 68.6 93 48.4
FAN10G2811 Fragaria x ananassa HOM05D006373 ORTHO05D008145 1.3e-09 68.2 93 45.2
Gorai.004G156300 Gossypium raimondii HOM05D006373 ORTHO05D008145 2.3e-09 67.4 93 46.2
Hma1.2p1_0068F.1_g037130 Hydrangea macrophylla HOM05D006373 ORTHO05D008145 2.3e-09 67.4 94 46.8
Solyc01g091820.3 Solanum lycopersicum HOM05D006373 ORTHO05D008145 2.3e-09 67.4 93 46.2
Sopen01g037590 Solanum pennellii HOM05D006373 ORTHO05D008145 2.3e-09 67.4 93 46.2
CDE04G1904 Ceratophyllum demersum HOM05D006373 ORTHO05D008145 2.9e-09 67.0 93 46.2
FAN06G4951 Fragaria x ananassa HOM05D006373 ORTHO05D008145 2.9e-09 67.0 64 56.2
Gohir.A08G129300 Gossypium hirsutum HOM05D006373 ORTHO05D008145 2.9e-09 67.0 93 46.2
FAN10G3773 Fragaria x ananassa HOM05D006373 ORTHO05D008145 3.8e-09 66.6 93 44.1
SalBow3G0067 Salvia bowleyana HOM05D006373 ORTHO05D008145 3.8e-09 66.6 93 44.1
Aqoxy7G00462 Aquilegia oxysepala HOM05D006373 ORTHO05D008145 5.0e-09 66.2 93 46.2
Thhalv10007143m.g Eutrema salsugineum HOM05D006373 ORTHO05D008145 6.6e-09 65.9 93 45.2
Psat3g112440 Pisum sativum HOM05D006373 ORTHO05D008145 6.6e-09 65.9 93 45.2
Sc23g0003310 Simmondsia chinensis HOM05D006373 ORTHO05D008145 6.6e-09 65.9 94 45.7
SGA_v2.0_scaffold153G37065 Striga asiatica HOM05D006373 ORTHO05D008145 6.6e-09 65.9 93 44.1
AUR62033368 Chenopodium quinoa HOM05D006373 ORTHO05D008145 8.6e-09 65.5 94 47.9
HanXRQChr03g0093561 Helianthus annuus HOM05D006373 ORTHO05D008145 8.6e-09 65.5 93 44.1
ECA240G2884 Erigeron canadensis HOM05D006373 ORTHO05D008145 1.1e-08 65.1 93 44.1
AT1G01880 Arabidopsis thaliana HOM05D006373 ORTHO05D008145 1.5e-08 64.7 93 45.2
ClCG06G000110 Citrullus lanatus HOM05D006373 ORTHO05D008145 1.5e-08 64.7 93 44.1
THA.LOC104801460 Tarenaya hassleriana HOM05D006373 ORTHO05D008145 1.5e-08 64.7 93 46.2
Sed0002578 Sechium edule HOM05D006373 ORTHO05D008145 2.5e-08 63.9 93 45.2
Hund27327 Selenicereus undatus HOM05D006373 ORTHO05D008145 2.5e-08 63.9 94 44.7
Ah.05g176000 Amaranthus hybridus HOM05D006373 ORTHO05D008145 3.3e-08 63.5 98 43.9
EL10Ac1g00966 Beta vulgaris HOM05D006373 ORTHO05D008145 3.3e-08 63.5 94 45.7
MELO3C022527.2 Cucumis melo HOM05D006373 ORTHO05D008145 3.3e-08 63.5 93 44.1
Eucgr.E00282 Eucalyptus grandis HOM05D006373 ORTHO05D008145 4.2e-08 63.2 95 43.2
Aa31LG1G11190 Aethionema arabicum HOM05D006373 ORTHO05D008145 5.6e-08 62.8 93 45.2
TAR375G0714 Trochodendron aralioides HOM05D006373 ORTHO05D008145 5.6e-08 62.8 93 44.1
Atru.chr5.401 Acer truncatum HOM05D006373 ORTHO05D008145 7.2e-08 62.4 93 44.1
CAN.G170.53 Capsicum annuum HOM05D006373 ORTHO05D008145 9.5e-08 62.0 93 43.0
TPR.G4740 Trifolium pratense HOM05D006373 ORTHO05D008145 9.5e-08 62.0 81 49.4
CARHR000470 Cardamine hirsuta HOM05D006373 ORTHO05D008145 1.2e-07 61.6 93 44.1
Ciclev10019320m.g Citrus clementina HOM05D006373 ORTHO05D008145 1.2e-07 61.6 94 46.8
Phvul.008G070200 Phaseolus vulgaris HOM05D006373 ORTHO05D008145 1.2e-07 61.6 94 42.6
TPR.G33174 Trifolium pratense HOM05D006373 ORTHO05D008145 1.2e-07 61.6 91 40.7
VMungo1383G2252 Vigna mungo HOM05D006373 ORTHO05D008145 1.2e-07 61.6 94 42.6
Lsat_1_v5_gn_3_135660 Lactuca sativa HOM05D006373 ORTHO05D008145 1.6e-07 61.2 93 44.1
Nn6g34269 Nelumbo nucifera HOM05D006373 ORTHO05D008145 2.8e-07 60.5 93 41.9
Sp1g00420 Schrenkiella parvula HOM05D006373 ORTHO05D008145 2.8e-07 60.5 93 41.9
Carub.0001s0035 Capsella rubella HOM05D006373 ORTHO05D008145 3.6e-07 60.1 93 41.9
PSO478G1066 Papaver somniferum HOM05D006373 ORTHO05D008145 6.1e-07 59.3 93 41.9
PSO782G5614 Papaver somniferum HOM05D006373 ORTHO05D008145 6.1e-07 59.3 93 41.9
Sabra14G0055000 Salix brachista HOM05D006373 ORTHO05D008145 1.0e-06 58.5 71 49.3
MBI12_g11810_MAGBIO Magnolia biondii HOM05D006373 ORTHO05D008145 1.8e-06 57.8 61 52.5
TPR.G37746 Trifolium pratense HOM05D006373 ORTHO05D008145 1.8e-06 57.8 77 41.6
Zm00001eb103090 Zea mays HOM05D006373 ORTHO05D008145 2.3e-06 57.4 72 45.8
HPP92_004956 Vanilla planifolia HOM05D006373 ORTHO05D008145 5.2e-06 56.2 92 41.3


User provided reference genes

Program Settings