Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08895 Sapria himalayana HOM05D004229 ORTHO05D005468 1.1e-72 276.6 148 100.0
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 6.4e-31 137.9 75 88.0
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 8.3e-31 137.5 75 88.0
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 8.3e-31 137.5 75 88.0
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 1.9e-30 136.3 75 86.7
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 1.9e-30 136.3 110 64.5
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 2.4e-30 136.0 111 63.1
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 4.1e-30 135.2 111 62.2
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 4.1e-30 135.2 101 68.3
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 5.4e-30 134.8 102 66.7
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 5.4e-30 134.8 144 54.2
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 5.4e-30 134.8 75 85.3
QL08p054691 Quercus lobata HOM05D004229 ORTHO05D005468 5.4e-30 134.8 121 60.3
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 7.0e-30 134.4 121 60.3
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 9.2e-30 134.0 86 77.9
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 9.2e-30 134.0 75 85.3
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 9.2e-30 134.0 74 87.8
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.2e-29 133.7 117 61.5
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.2e-29 133.7 117 61.5
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 1.2e-29 133.7 117 61.5
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 1.2e-29 133.7 74 86.5
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 1.2e-29 133.7 74 85.1
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 1.2e-29 133.7 75 85.3
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 1.2e-29 133.7 108 63.9
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 2.7e-29 132.5 74 85.1
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 3.5e-29 132.1 75 82.7
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 3.5e-29 132.1 111 61.3
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 4.6e-29 131.7 144 52.8
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 4.6e-29 131.7 144 52.8
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 4.6e-29 131.7 144 52.1
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 4.6e-29 131.7 153 48.4
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 6.0e-29 131.3 107 63.6
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 6.0e-29 131.3 107 63.6
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 6.0e-29 131.3 73 84.9
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 6.0e-29 131.3 144 53.5
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 7.8e-29 131.0 74 85.1
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 7.8e-29 131.0 75 84.0
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 7.8e-29 131.0 84 77.4
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 7.8e-29 131.0 145 51.7
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.3e-28 130.2 73 83.6
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 1.3e-28 130.2 153 48.4
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 1.3e-28 130.2 73 83.6
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 1.3e-28 130.2 111 60.4
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 1.7e-28 129.8 107 62.6
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 2.3e-28 129.4 117 60.7
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 3.0e-28 129.0 74 82.4
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 3.0e-28 129.0 107 63.6
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 3.0e-28 129.0 154 48.7
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 3.0e-28 129.0 102 63.7
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 3.9e-28 128.6 110 60.9
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 3.9e-28 128.6 107 63.6
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 3.9e-28 128.6 73 82.2
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 3.9e-28 128.6 107 62.6
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 6.6e-28 127.9 117 58.1
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 6.6e-28 127.9 117 58.1
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 8.6e-28 127.5 110 61.8
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 8.6e-28 127.5 153 49.0
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 8.6e-28 127.5 101 64.4
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 8.6e-28 127.5 110 60.9
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 1.5e-27 126.7 74 78.4
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 1.9e-27 126.3 74 77.0
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 2.5e-27 125.9 107 62.6
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 2.5e-27 125.9 145 49.0
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.5e-27 125.9 134 53.0
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.5e-27 125.9 134 53.0
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 5.6e-27 124.8 73 80.8
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 5.6e-27 124.8 74 78.4
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.3e-27 124.4 106 62.3
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.3e-27 124.4 106 62.3
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 7.3e-27 124.4 74 77.0
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 9.5e-27 124.0 73 82.2
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 1.2e-26 123.6 110 60.9
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 1.6e-26 123.2 145 49.0
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 1.6e-26 123.2 74 81.1
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 2.8e-26 122.5 85 69.4
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 2.8e-26 122.5 117 57.3
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 6.2e-26 121.3 109 56.0
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 8.0e-26 120.9 74 77.0
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 8.0e-26 120.9 117 56.4
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 1.1e-25 120.6 120 55.0
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 1.8e-25 119.8 89 68.5
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 1.8e-25 119.8 85 69.4
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 2.3e-25 119.4 74 75.7
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 4.0e-25 118.6 152 48.7
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 5.2e-25 118.2 74 75.7
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 5.2e-25 118.2 75 74.7
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 5.2e-25 118.2 120 55.0
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 5.2e-25 118.2 120 55.0
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 6.8e-25 117.9 74 71.6
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 8.9e-25 117.5 110 56.4
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 8.9e-25 117.5 110 56.4
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 1.2e-24 117.1 74 73.0
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 2.6e-24 115.9 115 51.3
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 2.6e-24 115.9 74 77.0
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 7.5e-24 114.4 107 57.0
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 7.5e-24 114.4 107 57.0
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 7.5e-24 114.4 123 52.0
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 9.8e-24 114.0 74 70.3
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 9.8e-24 114.0 74 73.0
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 1.3e-23 113.6 117 53.0
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 1.7e-23 113.2 107 57.0
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 2.2e-23 112.8 117 53.0
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 2.9e-23 112.5 117 53.0
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 2.9e-23 112.5 107 56.1
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 6.4e-23 111.3 100 59.0
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 8.3e-23 110.9 117 52.1
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 2.4e-22 109.4 117 51.3
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 3.2e-22 109.0 82 67.1
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 5.4e-22 108.2 74 68.9
CBR_g31454 Chara braunii HOM05D004229 ORTHO05D005468 9.2e-22 107.5 75 68.0
Cc02_g10970 Coffea canephora HOM05D004229 ORTHO05D005468 1.7e-20 103.2 59 81.4
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 5.1e-20 101.7 102 52.9
FAN04G2028 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.1e-20 101.7 75 66.7
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.1e-20 101.7 102 52.9
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 1.5e-19 100.1 118 50.8
FAN01G0054 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.5e-16 87.8 99 50.5
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.7e-15 86.7 71 63.4
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 4.1e-14 82.0 49 77.6
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 7.8e-13 77.8 92 48.9
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 7.8e-13 77.8 46 78.3
RcHm_v2.0_Chr7g0237381 Rosa chinensis HOM05D004229 ORTHO05D005468 1.0e-12 77.4 77 53.2
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 5.1e-12 75.1 117 43.6
arahy.Tifrunner.gnm1.ann1.5LR8AY Arachis hypogaea HOM05D004229 ORTHO05D005468 2.5e-11 72.8 46 76.1
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 7.3e-11 71.2 78 48.7
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 1.6e-10 70.1 88 43.2
Cfa022006 Carpinus fangiana HOM05D004229 ORTHO05D005468 5.4e-06 55.1 109 31.2
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 5.4e-06 55.1 80 38.8


User provided reference genes

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