Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06334 Sapria himalayana HOM05D000568 ORTHO05D000628 4.4e-38 160.6 71 100.0
Manes.09G185200 Manihot esculenta HOM05D000568 ORTHO05D000628 3.3e-09 64.7 48 56.2
TWI36G0920 Tripterygium wilfordii HOM05D000568 ORTHO05D000628 5.6e-09 63.9 48 58.3
TPR.G14647 Trifolium pratense HOM05D000568 ORTHO05D000628 7.3e-09 63.5 48 58.3
Phvul.007G118500 Phaseolus vulgaris HOM05D000568 ORTHO05D000628 9.5e-09 63.2 48 56.2
Manes.08G104100 Manihot esculenta HOM05D000568 ORTHO05D000628 1.6e-08 62.4 48 56.2
VMungo0720G0170 Vigna mungo HOM05D000568 ORTHO05D000628 1.6e-08 62.4 48 56.2
Aqoxy2G04063 Aquilegia oxysepala HOM05D000568 ORTHO05D000628 2.1e-08 62.0 48 54.2
CiPaw.07G079600 Carya illinoinensis HOM05D000568 ORTHO05D000628 2.8e-08 61.6 43 58.1
Lj1g0006041 Lotus japonicus HOM05D000568 ORTHO05D000628 2.8e-08 61.6 48 56.2
Glyma.10G170800 Glycine max HOM05D000568 ORTHO05D000628 3.6e-08 61.2 48 54.2
Glyma.20G219100 Glycine max HOM05D000568 ORTHO05D000628 3.6e-08 61.2 48 54.2
Gohir.A08G224800 Gossypium hirsutum HOM05D000568 ORTHO05D000628 3.6e-08 61.2 48 54.2
Gorai.004G261700 Gossypium raimondii HOM05D000568 ORTHO05D000628 3.6e-08 61.2 48 54.2
Lj5g0010452 Lotus japonicus HOM05D000568 ORTHO05D000628 3.6e-08 61.2 48 56.2
Medtr7g079840 Medicago truncatula HOM05D000568 ORTHO05D000628 4.7e-08 60.8 48 56.2
Atru.chr12.1796 Acer truncatum HOM05D000568 ORTHO05D000628 6.2e-08 60.5 52 51.9
ATR0561G241 Amborella trichopoda HOM05D000568 ORTHO05D000628 6.2e-08 60.5 48 52.1
COL.COLO4_27387 Corchorus olitorius HOM05D000568 ORTHO05D000628 6.2e-08 60.5 48 54.2
Duzib128G0444 Durio zibethinus HOM05D000568 ORTHO05D000628 6.2e-08 60.5 48 54.2
QL01p048758 Quercus lobata HOM05D000568 ORTHO05D000628 6.2e-08 60.5 48 54.2
Thecc.05G200400 Theobroma cacao HOM05D000568 ORTHO05D000628 6.2e-08 60.5 48 54.2
CSS0035731 Camellia sinensis var. sinensis HOM05D000568 ORTHO05D000628 8.1e-08 60.1 48 56.2
Ciclev10011741m.g Citrus clementina HOM05D000568 ORTHO05D000628 8.1e-08 60.1 48 54.2
Hma1.2p1_0123F.1_g057910 Hydrangea macrophylla HOM05D000568 ORTHO05D000628 8.1e-08 60.1 48 54.2
Nn1g09814 Nelumbo nucifera HOM05D000568 ORTHO05D000628 8.1e-08 60.1 51 49.0
PSO675G2685 Papaver somniferum HOM05D000568 ORTHO05D000628 8.1e-08 60.1 48 52.1
Psat3g103720 Pisum sativum HOM05D000568 ORTHO05D000628 8.1e-08 60.1 48 54.2
TPR.G30345 Trifolium pratense HOM05D000568 ORTHO05D000628 8.1e-08 60.1 48 54.2
TWI75G1052 Tripterygium wilfordii HOM05D000568 ORTHO05D000628 8.1e-08 60.1 48 54.2
GSVIVG01019118001 Vitis vinifera HOM05D000568 ORTHO05D000628 8.1e-08 60.1 48 54.2
CANSAT54G1162 Cannabis sativa HOM05D000568 ORTHO05D000628 1.1e-07 59.7 48 52.1
Glyma.18G241300 Glycine max HOM05D000568 ORTHO05D000628 1.1e-07 59.7 45 55.6
Gohir.D08G245200 Gossypium hirsutum HOM05D000568 ORTHO05D000628 1.4e-07 59.3 48 52.1
Potri.013G086800 Populus trichocarpa HOM05D000568 ORTHO05D000628 1.4e-07 59.3 48 52.1
Sabra13G0077100 Salix brachista HOM05D000568 ORTHO05D000628 1.4e-07 59.3 48 54.2
Eucgr.B01407 Eucalyptus grandis HOM05D000568 ORTHO05D000628 1.8e-07 58.9 48 54.2
Gohir.A13G154400 Gossypium hirsutum HOM05D000568 ORTHO05D000628 1.8e-07 58.9 48 52.1
Gohir.D13G159100 Gossypium hirsutum HOM05D000568 ORTHO05D000628 1.8e-07 58.9 48 52.1
Gorai.013G179800 Gossypium raimondii HOM05D000568 ORTHO05D000628 1.8e-07 58.9 48 52.1
Lj8A196T47 Lonicera japonica HOM05D000568 ORTHO05D000628 1.8e-07 58.9 48 56.2
MBI11_g07421_MAGBIO Magnolia biondii HOM05D000568 ORTHO05D000628 1.8e-07 58.9 48 52.1
Potri.019G053200 Populus trichocarpa HOM05D000568 ORTHO05D000628 1.8e-07 58.9 48 52.1
Sabra19G0062700 Salix brachista HOM05D000568 ORTHO05D000628 1.8e-07 58.9 48 52.1
CiPaw.08G115800 Carya illinoinensis HOM05D000568 ORTHO05D000628 2.4e-07 58.5 39 64.1
Glyma.09G251200 Glycine max HOM05D000568 ORTHO05D000628 2.4e-07 58.5 45 55.6
Phvul.008G054800 Phaseolus vulgaris HOM05D000568 ORTHO05D000628 2.4e-07 58.5 45 55.6
VMungo1383G1432 Vigna mungo HOM05D000568 ORTHO05D000628 2.4e-07 58.5 45 55.6
TAR633G0033 Trochodendron aralioides HOM05D000568 ORTHO05D000628 3.1e-07 58.2 48 50.0
arahy.Tifrunner.gnm1.ann1.MSPK9F Arachis hypogaea HOM05D000568 ORTHO05D000628 4.0e-07 57.8 61 44.3
arahy.Tifrunner.gnm1.ann1.ZG36KZ Arachis hypogaea HOM05D000568 ORTHO05D000628 4.0e-07 57.8 61 44.3
Cfa006270 Carpinus fangiana HOM05D000568 ORTHO05D000628 4.0e-07 57.8 36 63.9
Ca_07974_v3 Cicer arietinum L. HOM05D000568 ORTHO05D000628 4.0e-07 57.8 48 52.1
Haze_04545 Corylus avellana HOM05D000568 ORTHO05D000628 4.0e-07 57.8 36 63.9
Lalb_Chr21g0311441 Lupinus albus HOM05D000568 ORTHO05D000628 4.0e-07 57.8 39 61.5
PSO017G3594 Papaver somniferum HOM05D000568 ORTHO05D000628 4.0e-07 57.8 48 50.0
FAN09G0846 Fragaria x ananassa HOM05D000568 ORTHO05D000628 5.2e-07 57.4 48 52.1
FAN14G5758 Fragaria x ananassa HOM05D000568 ORTHO05D000628 5.2e-07 57.4 48 52.1
TAR392G0001 Trochodendron aralioides HOM05D000568 ORTHO05D000628 6.8e-07 57.0 48 47.9
Lalb_Chr02g0149441 Lupinus albus HOM05D000568 ORTHO05D000628 8.9e-07 56.6 39 59.0
MD04G1244100 Malus domestica HOM05D000568 ORTHO05D000628 8.9e-07 56.6 48 50.0
Gohir.D04G026000 Gossypium hirsutum HOM05D000568 ORTHO05D000628 1.2e-06 56.2 35 65.7
Gorai.012G028600 Gossypium raimondii HOM05D000568 ORTHO05D000628 1.2e-06 56.2 35 65.7
SGA_v2.0_scaffold122G33175 Striga asiatica HOM05D000568 ORTHO05D000628 1.2e-06 56.2 48 54.2
TAR362G0496 Trochodendron aralioides HOM05D000568 ORTHO05D000628 1.2e-06 56.2 48 47.9
Actinidia03829 Actinidia chinensis HOM05D000568 ORTHO05D000628 1.5e-06 55.8 48 52.1
CDE05G1779 Ceratophyllum demersum HOM05D000568 ORTHO05D000628 1.5e-06 55.8 48 50.0
MD12G1259900 Malus domestica HOM05D000568 ORTHO05D000628 1.5e-06 55.8 48 50.0
Prupe.6G360600 Prunus persica HOM05D000568 ORTHO05D000628 1.5e-06 55.8 48 50.0
CDE09G1328 Ceratophyllum demersum HOM05D000568 ORTHO05D000628 2.0e-06 55.5 37 59.5
FvH4_6g00570 Fragaria vesca HOM05D000568 ORTHO05D000628 2.0e-06 55.5 48 50.0
FAN05G2012 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.0e-06 55.5 48 50.0
Gohir.A05G391200 Gossypium hirsutum HOM05D000568 ORTHO05D000628 2.0e-06 55.5 45 53.3
Nitab4.5_0001653g0090 Nicotiana tabacum HOM05D000568 ORTHO05D000628 2.0e-06 55.5 48 52.1
Nitab4.5_0011656g0010 Nicotiana tabacum HOM05D000568 ORTHO05D000628 2.0e-06 55.5 48 52.1
ClCG03G010840 Citrullus lanatus HOM05D000568 ORTHO05D000628 2.6e-06 55.1 42 57.1
MELO3C010064.2 Cucumis melo HOM05D000568 ORTHO05D000628 2.6e-06 55.1 42 57.1
CsaV3_1G044580 Cucumis sativus L. HOM05D000568 ORTHO05D000628 2.6e-06 55.1 42 57.1
Migut.F01877 Erythranthe guttata HOM05D000568 ORTHO05D000628 2.6e-06 55.1 48 50.0
Medtr1g078270 Medicago truncatula HOM05D000568 ORTHO05D000628 2.6e-06 55.1 35 65.7
Oeu062053.1 Olea europaea HOM05D000568 ORTHO05D000628 2.6e-06 55.1 48 52.1
PGR031G3440 Punica granatum HOM05D000568 ORTHO05D000628 2.6e-06 55.1 50 48.0
Rhsim09G0129700 Rhododendron simsii HOM05D000568 ORTHO05D000628 2.6e-06 55.1 48 52.1
RcHm_v2.0_Chr3g0447961 Rosa chinensis HOM05D000568 ORTHO05D000628 2.6e-06 55.1 48 50.0
Sed0011474 Sechium edule HOM05D000568 ORTHO05D000628 2.6e-06 55.1 42 57.1
Aa31LG5G13300 Aethionema arabicum HOM05D000568 ORTHO05D000628 3.4e-06 54.7 35 62.9
MSTRG.325 Avicennia marina HOM05D000568 ORTHO05D000628 3.4e-06 54.7 48 52.1
BcaC05g30503 Brassica carinata HOM05D000568 ORTHO05D000628 3.4e-06 54.7 35 62.9
A05p44290 Brassica napus HOM05D000568 ORTHO05D000628 3.4e-06 54.7 35 62.9
C09p75950 Brassica napus HOM05D000568 ORTHO05D000628 3.4e-06 54.7 35 62.9
BolC5t35062H Brassica oleracea HOM05D000568 ORTHO05D000628 3.4e-06 54.7 35 62.9
BraA06t23285Z Brassica rapa HOM05D000568 ORTHO05D000628 3.4e-06 54.7 35 62.9
Nitab4.5_0001308g0180 Nicotiana tabacum HOM05D000568 ORTHO05D000628 3.4e-06 54.7 48 52.1
PGR119G1524 Punica granatum HOM05D000568 ORTHO05D000628 3.4e-06 54.7 43 53.5
Sed0013686 Sechium edule HOM05D000568 ORTHO05D000628 3.4e-06 54.7 42 57.1
Solyc11g008900.2 Solanum lycopersicum HOM05D000568 ORTHO05D000628 3.4e-06 54.7 48 52.1
Sopen11g004680 Solanum pennellii HOM05D000568 ORTHO05D000628 3.4e-06 54.7 48 52.1
PGSC0003DMG400016236 Solanum tuberosum HOM05D000568 ORTHO05D000628 3.4e-06 54.7 48 52.1
AL3G12240 Arabidopsis lyrata HOM05D000568 ORTHO05D000628 4.4e-06 54.3 43 51.2
vmacro10408 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 4.4e-06 54.3 57 50.9
Thhalv10013743m.g Eutrema salsugineum HOM05D000568 ORTHO05D000628 5.8e-06 53.9 39 59.0
Lsat_1_v5_gn_9_48840 Lactuca sativa HOM05D000568 ORTHO05D000628 5.8e-06 53.9 48 50.0
CSS0012695 Camellia sinensis var. sinensis HOM05D000568 ORTHO05D000628 7.6e-06 53.5 48 50.0
DCAR_031600 Daucus carota HOM05D000568 ORTHO05D000628 7.6e-06 53.5 42 54.8
Dinv06978 Davidia involucrata HOM05D000568 ORTHO05D000628 7.6e-06 53.5 48 50.0
ECA240G2233 Erigeron canadensis HOM05D000568 ORTHO05D000628 7.6e-06 53.5 42 45.2
FAN02G1199 Fragaria x ananassa HOM05D000568 ORTHO05D000628 7.6e-06 53.5 48 47.9
SalBow6G1599 Salvia bowleyana HOM05D000568 ORTHO05D000628 7.6e-06 53.5 48 50.0
Carub.0006s1474 Capsella rubella HOM05D000568 ORTHO05D000628 9.9e-06 53.1 36 61.1
CAN.G1177.12 Capsicum annuum HOM05D000568 ORTHO05D000628 9.9e-06 53.1 48 50.0
HanXRQChr02g0039631 Helianthus annuus HOM05D000568 ORTHO05D000628 9.9e-06 53.1 48 47.9
Nitab4.5_0002233g0030 Nicotiana tabacum HOM05D000568 ORTHO05D000628 9.9e-06 53.1 48 50.0
Peaxi162Scf00253g00721 Petunia axillaris HOM05D000568 ORTHO05D000628 9.9e-06 53.1 39 59.0


User provided reference genes

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