Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05887 Sapria himalayana HOM05D001007 ORTHO05D023068 3.2e-101 371.7 182 100.0
Cfa011634 Carpinus fangiana HOM05D001007 ORTHO05D006705 6.7e-14 81.6 45 84.4
Haze_24239 Corylus avellana HOM05D001007 ORTHO05D006705 1.1e-13 80.9 45 82.2
Cpa.g.sc112.71 Carica papaya HOM05D001007 ORTHO05D006705 2.5e-13 79.7 45 77.8
Hma1.2p1_0227F.1_g096160 Hydrangea macrophylla HOM05D001007 ORTHO05D006705 2.8e-12 76.3 45 77.8
QL01p027375 Quercus lobata HOM05D001007 ORTHO05D006705 2.8e-12 76.3 45 75.6
HPP92_015299 Vanilla planifolia HOM05D001007 ORTHO05D023068 2.8e-12 76.3 45 71.1
HPP92_015336 Vanilla planifolia HOM05D001007 ORTHO05D023068 2.8e-12 76.3 45 71.1
Aqoxy1G00722 Aquilegia oxysepala HOM05D001007 ORTHO05D006705 3.6e-12 75.9 47 70.2
TAR369G0542 Trochodendron aralioides HOM05D001007 ORTHO05D006705 3.6e-12 75.9 45 75.6
Cc01_g13740 Coffea canephora HOM05D001007 ORTHO05D006705 6.2e-12 75.1 45 73.3
Potri.009G041200 Populus trichocarpa HOM05D001007 ORTHO05D006705 8.1e-12 74.7 45 75.6
Sabra09G0029000 Salix brachista HOM05D001007 ORTHO05D006705 8.1e-12 74.7 45 75.6
CAN.G538.2 Capsicum annuum HOM05D001007 ORTHO05D006705 1.1e-11 74.3 45 71.1
Sed0027946 Sechium edule HOM05D001007 ORTHO05D006705 1.1e-11 74.3 45 73.3
Manes.01G165300 Manihot esculenta HOM05D001007 ORTHO05D006705 1.8e-11 73.6 45 73.3
Atru.chr3.4061 Acer truncatum HOM05D001007 ORTHO05D006705 2.4e-11 73.2 46 71.7
CSS0032887 Camellia sinensis var. sinensis HOM05D001007 ORTHO05D006705 2.4e-11 73.2 45 73.3
Ciclev10027687m.g Citrus clementina HOM05D001007 ORTHO05D006705 2.4e-11 73.2 46 73.9
MBI05_g03442_MAGBIO Magnolia biondii HOM05D001007 ORTHO05D006705 2.4e-11 73.2 47 72.3
THA.LOC104814901 Tarenaya hassleriana HOM05D001007 ORTHO05D006705 2.4e-11 73.2 44 75.0
Actinidia25132 Actinidia chinensis HOM05D001007 ORTHO05D006705 3.1e-11 72.8 44 72.7
CiPaw.13G082700 Carya illinoinensis HOM05D001007 ORTHO05D006705 3.1e-11 72.8 47 68.1
FvH4_3g37880 Fragaria vesca HOM05D001007 ORTHO05D006705 4.0e-11 72.4 45 71.1
FAN11G3969 Fragaria x ananassa HOM05D001007 ORTHO05D006705 4.0e-11 72.4 45 71.1
FAN25G0707 Fragaria x ananassa HOM05D001007 ORTHO05D006705 4.0e-11 72.4 45 71.1
Nn2g11355 Nelumbo nucifera HOM05D001007 ORTHO05D006705 4.0e-11 72.4 45 71.1
MD03G1077900 Malus domestica HOM05D001007 ORTHO05D006705 5.3e-11 72.0 45 75.6
Oeu035015.2 Olea europaea HOM05D001007 ORTHO05D006705 5.3e-11 72.0 44 75.0
RcHm_v2.0_Chr5g0068091 Rosa chinensis HOM05D001007 ORTHO05D006705 5.3e-11 72.0 45 71.1
MD11G1082500 Malus domestica HOM05D001007 ORTHO05D006705 6.9e-11 71.6 45 73.3
Solyc06g005990.4 Solanum lycopersicum HOM05D001007 ORTHO05D006705 6.9e-11 71.6 45 68.9
Sopen06g001970 Solanum pennellii HOM05D001007 ORTHO05D006705 6.9e-11 71.6 45 68.9
vmacro02999 Vaccinium macrocarpon HOM05D001007 ORTHO05D006705 6.9e-11 71.6 45 71.1
CANSAT54G2449 Cannabis sativa HOM05D001007 ORTHO05D006705 1.2e-10 70.9 45 71.1
Lj2A1128G41 Lonicera japonica HOM05D001007 ORTHO05D006705 1.2e-10 70.9 45 68.9
EL10Ac7g16109 Beta vulgaris HOM05D001007 ORTHO05D006705 1.5e-10 70.5 45 62.2
TWI79G0297 Tripterygium wilfordii HOM05D001007 ORTHO05D006705 1.5e-10 70.5 45 71.1
Aa31LG4G15900 Aethionema arabicum HOM05D001007 ORTHO05D006705 2.6e-10 69.7 44 70.5
CsaV3_1G035960 Cucumis sativus L. HOM05D001007 ORTHO05D006705 2.6e-10 69.7 45 68.9
Lj6g0017433 Lotus japonicus HOM05D001007 ORTHO05D006705 2.6e-10 69.7 45 64.4
Peaxi162Scf00842g00018 Petunia axillaris HOM05D001007 ORTHO05D006705 4.5e-10 68.9 44 63.6
COL.COLO4_19087 Corchorus olitorius HOM05D001007 ORTHO05D006705 5.8e-10 68.6 45 68.9
FAN21G1509 Fragaria x ananassa HOM05D001007 ORTHO05D006705 7.6e-10 68.2 45 66.7
Peaxi162Scf00842g00017 Petunia axillaris HOM05D001007 ORTHO05D023068 7.6e-10 68.2 44 63.6
Carub.0005s1318 Capsella rubella HOM05D001007 ORTHO05D006705 9.9e-10 67.8 44 68.2
ClCG03G000980 Citrullus lanatus HOM05D001007 ORTHO05D006705 9.9e-10 67.8 45 66.7
Lalb_Chr20g0115061 Lupinus albus HOM05D001007 ORTHO05D006705 9.9e-10 67.8 44 65.9
Ah.08g220450 Amaranthus hybridus HOM05D001007 ORTHO05D006705 1.3e-09 67.4 45 62.2
Eucgr.B02279 Eucalyptus grandis HOM05D001007 ORTHO05D006705 1.3e-09 67.4 44 68.2
Glyma.18G067400 Glycine max HOM05D001007 ORTHO05D006705 1.3e-09 67.4 44 65.9
PGR102G0557 Punica granatum HOM05D001007 ORTHO05D006705 1.3e-09 67.4 45 66.7
Rhsim13G0073900 Rhododendron simsii HOM05D001007 ORTHO05D006705 1.7e-09 67.0 44 68.2
AL5G26180 Arabidopsis lyrata HOM05D001007 ORTHO05D006705 2.2e-09 66.6 44 65.9
MSTRG.18565 Avicennia marina HOM05D001007 ORTHO05D006705 2.9e-09 66.2 43 69.8
Migut.D00864 Erythranthe guttata HOM05D001007 ORTHO05D006705 2.9e-09 66.2 46 71.7
PSO339G3632 Papaver somniferum HOM05D001007 ORTHO05D006705 2.9e-09 66.2 57 56.1
PSO384G0462 Papaver somniferum HOM05D001007 ORTHO05D006705 2.9e-09 66.2 57 56.1
Phvul.006G063900 Phaseolus vulgaris HOM05D001007 ORTHO05D006705 2.9e-09 66.2 44 65.9
SGA_v2.0_scaffold20G09308 Striga asiatica HOM05D001007 ORTHO05D006705 2.9e-09 66.2 45 66.7
Psat5g162480 Pisum sativum HOM05D001007 ORTHO05D006705 3.8e-09 65.9 45 64.4
unitig_0.g809 Utricularia gibba HOM05D001007 ORTHO05D023068 4.9e-09 65.5 61 52.5
Ca_14897_v3 Cicer arietinum L. HOM05D001007 ORTHO05D006705 6.4e-09 65.1 45 64.4
Duzib170G0956 Durio zibethinus HOM05D001007 ORTHO05D006705 6.4e-09 65.1 45 62.2
Lsat_1_v5_gn_4_65480 Lactuca sativa HOM05D001007 ORTHO05D006705 6.4e-09 65.1 45 60.0
Medtr3g462290 Medicago truncatula HOM05D001007 ORTHO05D006705 6.4e-09 65.1 45 64.4
Thecc.09G307300 Theobroma cacao HOM05D001007 ORTHO05D006705 6.4e-09 65.1 45 62.2
VMungo0540G2128 Vigna mungo HOM05D001007 ORTHO05D006705 6.4e-09 65.1 44 63.6
GSVIVG01024808001 Vitis vinifera HOM05D001007 ORTHO05D006705 6.4e-09 65.1 44 61.4
Thhalv10010069m.g Eutrema salsugineum HOM05D001007 ORTHO05D006705 8.4e-09 64.7 44 65.9
MELO3C020571.2 Cucumis melo HOM05D001007 ORTHO05D006705 1.1e-08 64.3 45 62.2
AT3G46960 Arabidopsis thaliana HOM05D001007 ORTHO05D006705 1.4e-08 63.9 44 61.4
BolC3t19398H Brassica oleracea HOM05D001007 ORTHO05D006705 1.4e-08 63.9 69 50.7
Gohir.A03G048400 Gossypium hirsutum HOM05D001007 ORTHO05D006705 1.4e-08 63.9 45 62.2
Gohir.D03G118700 Gossypium hirsutum HOM05D001007 ORTHO05D006705 1.4e-08 63.9 45 62.2
Gorai.003G125100 Gossypium raimondii HOM05D001007 ORTHO05D006705 1.4e-08 63.9 45 62.2
CARHR155590 Cardamine hirsuta HOM05D001007 ORTHO05D006705 2.4e-08 63.2 44 63.6
AUR62001703 Chenopodium quinoa HOM05D001007 ORTHO05D006705 3.2e-08 62.8 45 60.0
CDE07G1123 Ceratophyllum demersum HOM05D001007 ORTHO05D006705 4.2e-08 62.4 45 60.0
Prupe.6G062900 Prunus persica HOM05D001007 ORTHO05D006705 4.2e-08 62.4 45 64.4
TPR.G30104 Trifolium pratense HOM05D001007 ORTHO05D006705 5.5e-08 62.0 45 60.0
A06p20600 Brassica napus HOM05D001007 ORTHO05D006705 7.1e-08 61.6 44 63.6
BraA06t25139Z Brassica rapa HOM05D001007 ORTHO05D006705 7.1e-08 61.6 44 63.6
arahy.Tifrunner.gnm1.ann1.MGB2DA Arachis hypogaea HOM05D001007 ORTHO05D006705 1.6e-07 60.5 39 64.1
arahy.Tifrunner.gnm1.ann1.SSF8HC Arachis hypogaea HOM05D001007 ORTHO05D006705 1.6e-07 60.5 39 64.1
Sp5g14780 Schrenkiella parvula HOM05D001007 ORTHO05D006705 2.1e-07 60.1 44 61.4
C03p71130 Brassica napus HOM05D001007 ORTHO05D006705 4.6e-07 58.9 44 61.4
Peaxi162Scf00216g00144 Petunia axillaris HOM05D001007 ORTHO05D023068 6.0e-07 58.5 38 63.2
DCAR_015644 Daucus carota HOM05D001007 ORTHO05D006705 1.8e-06 57.0 55 50.9
ATR0618G385 Amborella trichopoda HOM05D001007 ORTHO05D006705 2.3e-06 56.6 45 55.6
HanXRQChr10g0294221 Helianthus annuus HOM05D001007 ORTHO05D006705 6.7e-06 55.1 45 55.6


User provided reference genes

Program Settings