Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05879 Sapria himalayana HOM05D000181 ORTHO05D001342 1.4e-41 172.6 91 100.0
Ah.08g220730 Amaranthus hybridus HOM05D000181 ORTHO05D005757 4.2e-09 64.7 36 88.9
Ca_05586_v3 Cicer arietinum L. HOM05D000181 ORTHO05D005757 7.2e-09 63.9 66 57.6
Medtr5g069780 Medicago truncatula HOM05D000181 ORTHO05D005757 7.2e-09 63.9 36 88.9
Psat1g066520 Pisum sativum HOM05D000181 ORTHO05D005757 7.2e-09 63.9 66 57.6
SGA_v2.0_scaffold39G15251 Striga asiatica HOM05D000181 ORTHO05D005757 7.2e-09 63.9 36 88.9
TPR.G24052 Trifolium pratense HOM05D000181 ORTHO05D005757 7.2e-09 63.9 66 57.6
Manes.02G121800 Manihot esculenta HOM05D000181 ORTHO05D005757 1.6e-08 62.8 36 86.1
Actinidia25147 Actinidia chinensis HOM05D000181 ORTHO05D005757 2.1e-08 62.4 36 86.1
AL5G26300 Arabidopsis lyrata HOM05D000181 ORTHO05D005757 2.1e-08 62.4 43 74.4
CSS0046009 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D005757 2.1e-08 62.4 36 86.1
Cpa.g.sc112.54 Carica papaya HOM05D000181 ORTHO05D005757 2.1e-08 62.4 36 83.3
HanXRQChr05g0135651 Helianthus annuus HOM05D000181 ORTHO05D005757 2.1e-08 62.4 36 86.1
Lalb_Chr10g0103271 Lupinus albus HOM05D000181 ORTHO05D005757 2.1e-08 62.4 36 86.1
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 2.1e-08 62.4 48 66.7
TAR633G2091 Trochodendron aralioides HOM05D000181 ORTHO05D005757 2.1e-08 62.4 43 76.7
unitig_8.g3694 Utricularia gibba HOM05D000181 ORTHO05D005757 2.1e-08 62.4 36 83.3
Carub.0005s1330 Capsella rubella HOM05D000181 ORTHO05D005757 2.7e-08 62.0 43 74.4
AUR62001684 Chenopodium quinoa HOM05D000181 ORTHO05D005757 2.7e-08 62.0 36 83.3
AUR62020098 Chenopodium quinoa HOM05D000181 ORTHO05D005757 2.7e-08 62.0 36 83.3
DCAR_007391 Daucus carota HOM05D000181 ORTHO05D005757 2.7e-08 62.0 71 53.5
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 2.7e-08 62.0 36 83.3
Eucgr.B02274 Eucalyptus grandis HOM05D000181 ORTHO05D005757 2.7e-08 62.0 36 83.3
Lalb_Chr04g0252331 Lupinus albus HOM05D000181 ORTHO05D005757 2.7e-08 62.0 42 76.2
Manes.01G164300 Manihot esculenta HOM05D000181 ORTHO05D005757 2.7e-08 62.0 36 86.1
Medtr3g462930 Medicago truncatula HOM05D000181 ORTHO05D005757 2.7e-08 62.0 36 86.1
VMungo0647G2397 Vigna mungo HOM05D000181 ORTHO05D005757 2.7e-08 62.0 36 83.3
GSVIVG01024791001 Vitis vinifera HOM05D000181 ORTHO05D005757 2.7e-08 62.0 36 88.9
arahy.Tifrunner.gnm1.ann1.70SKLQ Arachis hypogaea HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 86.1
arahy.Tifrunner.gnm1.ann1.ND684V Arachis hypogaea HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 86.1
EL10Ac7g16127 Beta vulgaris HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 83.3
CANSAT54G2135 Cannabis sativa HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 80.6
DCAR_005895 Daucus carota HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 86.1
Glyma.18G065600 Glycine max HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 83.3
HanXRQChr06g0179431 Helianthus annuus HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 86.1
Lj6g0028119 Lotus japonicus HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 83.3
Phvul.006G065400 Phaseolus vulgaris HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 83.3
Sc12g0000870 Simmondsia chinensis HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 86.1
THA.LOC104810725 Tarenaya hassleriana HOM05D000181 ORTHO05D005757 3.6e-08 61.6 36 80.6
ATR0618G289 Amborella trichopoda HOM05D000181 ORTHO05D005757 4.7e-08 61.2 43 76.7
AT3G47060 Arabidopsis thaliana HOM05D000181 ORTHO05D005757 4.7e-08 61.2 43 74.4
Dinv14464 Davidia involucrata HOM05D000181 ORTHO05D005757 4.7e-08 61.2 36 83.3
ECA236G3476 Erigeron canadensis HOM05D000181 ORTHO05D005757 4.7e-08 61.2 36 83.3
Gohir.A03G049400 Gossypium hirsutum HOM05D000181 ORTHO05D005757 4.7e-08 61.2 66 54.5
Gohir.D03G117900 Gossypium hirsutum HOM05D000181 ORTHO05D005757 4.7e-08 61.2 66 54.5
Gorai.003G124400 Gossypium raimondii HOM05D000181 ORTHO05D005757 4.7e-08 61.2 66 54.5
Nn2g11391 Nelumbo nucifera HOM05D000181 ORTHO05D005757 4.7e-08 61.2 43 76.7
Phvul.008G262300 Phaseolus vulgaris HOM05D000181 ORTHO05D005757 4.7e-08 61.2 36 83.3
Actinidia38828 Actinidia chinensis HOM05D000181 ORTHO05D005757 6.1e-08 60.8 36 83.3
A10p15460 Brassica napus HOM05D000181 ORTHO05D005757 6.1e-08 60.8 66 53.0
BraA10t43689Z Brassica rapa HOM05D000181 ORTHO05D005757 6.1e-08 60.8 66 53.0
Ca_14910_v3 Cicer arietinum L. HOM05D000181 ORTHO05D005757 6.1e-08 60.8 36 83.3
Duzib150G0876 Durio zibethinus HOM05D000181 ORTHO05D005757 6.1e-08 60.8 36 83.3
Psat5g162280 Pisum sativum HOM05D000181 ORTHO05D005757 6.1e-08 60.8 36 83.3
Potri.001G249100 Populus trichocarpa HOM05D000181 ORTHO05D005757 6.1e-08 60.8 36 80.6
TPR.G13266 Trifolium pratense HOM05D000181 ORTHO05D005757 6.1e-08 60.8 36 83.3
VMungo0540G0029 Vigna mungo HOM05D000002 ORTHO05D005757 6.1e-08 60.8 36 83.3
Zm00001eb186240 Zea mays HOM05D000181 ORTHO05D005757 6.1e-08 60.8 43 74.4
Ciclev10027831m.g Citrus clementina HOM05D000181 ORTHO05D005757 7.9e-08 60.5 36 86.1
Cc01_g13940 Coffea canephora HOM05D000181 ORTHO05D005757 7.9e-08 60.5 36 83.3
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 7.9e-08 60.5 37 81.1
FvH4_3g38190 Fragaria vesca HOM05D000181 ORTHO05D005757 7.9e-08 60.5 66 54.5
FAN11G0623 Fragaria x ananassa HOM05D000181 ORTHO05D005757 7.9e-08 60.5 66 54.5
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 7.9e-08 60.5 66 54.5
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 7.9e-08 60.5 66 54.5
Gohir.A05G089900 Gossypium hirsutum HOM05D000181 ORTHO05D005757 7.9e-08 60.5 36 80.6
Gohir.D05G090800 Gossypium hirsutum HOM05D000181 ORTHO05D005757 7.9e-08 60.5 36 80.6
Gorai.009G093300 Gossypium raimondii HOM05D000181 ORTHO05D005757 7.9e-08 60.5 36 80.6
MBI05_g03462_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D005757 7.9e-08 60.5 43 74.4
MD11G1080400 Malus domestica HOM05D000181 ORTHO05D005757 7.9e-08 60.5 36 83.3
Prupe.6G060800 Prunus persica HOM05D000181 ORTHO05D005757 7.9e-08 60.5 36 83.3
RcHm_v2.0_Chr5g0068621 Rosa chinensis HOM05D000181 ORTHO05D005757 7.9e-08 60.5 66 54.5
Sabra16G0151200 Salix brachista HOM05D000181 ORTHO05D005757 7.9e-08 60.5 36 80.6
Sp6g20570 Schrenkiella parvula HOM05D000181 ORTHO05D005757 7.9e-08 60.5 36 80.6
Hund04887 Selenicereus undatus HOM05D000181 ORTHO05D005757 7.9e-08 60.5 36 83.3
Zm00001eb248950 Zea mays HOM05D000181 ORTHO05D005757 7.9e-08 60.5 43 72.1
CSS0008554 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D005757 1.0e-07 60.1 36 83.3
CSS0011161 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D005757 1.0e-07 60.1 36 83.3
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 1.0e-07 60.1 43 74.4
CDE04G0235 Ceratophyllum demersum HOM05D000181 ORTHO05D005757 1.0e-07 60.1 43 74.4
Potri.009G043100 Populus trichocarpa HOM05D000181 ORTHO05D005757 1.0e-07 60.1 36 80.6
QL01p026829 Quercus lobata HOM05D000181 ORTHO05D005757 1.0e-07 60.1 66 54.5
Sabra09G0030500 Salix brachista HOM05D000181 ORTHO05D005757 1.0e-07 60.1 42 73.8
SalBow2G0286 Salvia bowleyana HOM05D000181 ORTHO05D005757 1.0e-07 60.1 36 83.3
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 1.0e-07 60.1 46 65.2
Aqoxy4G02662 Aquilegia oxysepala HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 83.3
AL3G40320 Arabidopsis lyrata HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 80.6
AL8G35200 Arabidopsis lyrata HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 80.6
Carub.0008s1951 Capsella rubella HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 80.6
CARHR155660 Cardamine hirsuta HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 77.8
ClCG03G000890 Citrullus lanatus HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 83.3
FAN25G0837 Fragaria x ananassa HOM05D000181 ORTHO05D005757 1.4e-07 59.7 66 54.5
Glyma.02G225300 Glycine max HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 83.3
Glyma.14G192100 Glycine max HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 83.3
Nitab4.5_0000102g0170 Nicotiana tabacum HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 83.3
Nitab4.5_0001970g0080 Nicotiana tabacum HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 83.3
Os02g0649700 Oryza sativa ssp. japonica HOM05D000181 ORTHO05D005757 1.4e-07 59.7 43 74.4
Peaxi162Scf00216g00037 Petunia axillaris HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 80.6
Thecc.09G305500 Theobroma cacao HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 80.6
TWI31G1099 Tripterygium wilfordii HOM05D000181 ORTHO05D005757 1.4e-07 59.7 36 83.3
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 1.4e-07 59.7 43 72.1
MSTRG.12663 Avicennia marina HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 83.3
BcaC04g19854 Brassica carinata HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 77.8
C09p51030 Brassica napus HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 77.8
BolC9t57960H Brassica oleracea HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 77.8
CiPaw.13G080800 Carya illinoinensis HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 83.3
CiPaw.14G061100 Carya illinoinensis HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 83.3
COL.COLO4_19109 Corchorus olitorius HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 80.6
Thhalv10010128m.g Eutrema salsugineum HOM05D000181 ORTHO05D005757 1.8e-07 59.3 43 69.8
LjContig00155g0009316 Lotus japonicus HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 83.3
PSO339G2545 Papaver somniferum HOM05D000181 ORTHO05D005757 1.8e-07 59.3 43 69.8
PSO384G0122 Papaver somniferum HOM05D000181 ORTHO05D005757 1.8e-07 59.3 43 69.8
Rhsim13G0072100 Rhododendron simsii HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 83.3
Sp5g14670 Schrenkiella parvula HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 77.8
THA.LOC104814906 Tarenaya hassleriana HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 80.6
vmacro02988 Vaccinium macrocarpon HOM05D000181 ORTHO05D005757 1.8e-07 59.3 36 83.3
Cfa011653 Carpinus fangiana HOM05D000181 ORTHO05D005757 2.3e-07 58.9 36 80.6
Haze_24257 Corylus avellana HOM05D000181 ORTHO05D005757 2.3e-07 58.9 36 80.6
CAN.G483.1 Capsicum annuum HOM05D000181 ORTHO05D005757 3.0e-07 58.5 36 77.8
CsaV3_1G036040 Cucumis sativus L. HOM05D000181 ORTHO05D005757 3.0e-07 58.5 36 80.6
ECA233G1417 Erigeron canadensis HOM05D001521 ORTHO05D001342 3.0e-07 58.5 51 62.7
Lsat_1_v5_gn_8_71240 Lactuca sativa HOM05D000181 ORTHO05D005757 3.0e-07 58.5 36 77.8
BcaC01g01859 Brassica carinata HOM05D000181 ORTHO05D005757 3.9e-07 58.2 36 77.8
A06p20470 Brassica napus HOM05D000181 ORTHO05D005757 3.9e-07 58.2 36 77.8
C03p71290 Brassica napus HOM05D000181 ORTHO05D005757 3.9e-07 58.2 36 77.8
BolC3t19414H Brassica oleracea HOM05D000181 ORTHO05D005757 3.9e-07 58.2 36 77.8
BraA06t25122Z Brassica rapa HOM05D000181 ORTHO05D005757 3.9e-07 58.2 36 77.8
MD03G1074100 Malus domestica HOM05D000181 ORTHO05D005757 3.9e-07 58.2 36 80.6
Solyc06g005950.3 Solanum lycopersicum HOM05D000181 ORTHO05D005757 3.9e-07 58.2 36 80.6
Sopen06g001920 Solanum pennellii HOM05D000181 ORTHO05D005757 3.9e-07 58.2 36 80.6
PGSC0003DMG400004149 Solanum tuberosum HOM05D000181 ORTHO05D005757 3.9e-07 58.2 36 80.6
Aa31LG1G18900 Aethionema arabicum HOM05D000181 ORTHO05D005757 5.1e-07 57.8 36 77.8
AT5G58870 Arabidopsis thaliana HOM05D000181 ORTHO05D005757 5.1e-07 57.8 36 77.8
CARHR272800 Cardamine hirsuta HOM05D000181 ORTHO05D005757 5.1e-07 57.8 36 75.0
Lj2A1078G39 Lonicera japonica HOM05D000181 ORTHO05D005757 5.1e-07 57.8 36 83.3
Sed0008141 Sechium edule HOM05D000181 ORTHO05D005757 5.1e-07 57.8 36 80.6
Oeu049273.1 Olea europaea HOM05D000181 ORTHO05D005757 6.7e-07 57.4 36 80.6
Atru.chr3.4273 Acer truncatum HOM05D000181 ORTHO05D005757 8.8e-07 57.0 36 77.8
Nn2g13622 Nelumbo nucifera HOM05D000181 ORTHO05D005757 8.8e-07 57.0 43 74.4
Oeu009381.1 Olea europaea HOM05D000181 ORTHO05D005757 1.1e-06 56.6 36 77.8
Migut.N00882 Erythranthe guttata HOM05D000181 ORTHO05D005757 4.4e-06 54.7 36 75.0
BcaB01g00951 Brassica carinata HOM05D000181 ORTHO05D005757 5.7e-06 54.3 36 75.0
Mapoly0001s0318 Marchantia polymorpha HOM05D000181 ORTHO05D005757 5.7e-06 54.3 47 63.8


User provided reference genes

Program Settings