Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05636 Sapria himalayana HOM05D004284 ORTHO05D006610 9.4e-146 520.0 235 100.0
Hund00174 Selenicereus undatus HOM05D004284 ORTHO05D006610 8.3e-17 91.7 40 95.0
Hund00182 Selenicereus undatus HOM05D004284 ORTHO05D006610 8.3e-17 91.7 40 95.0
MSTRG.20021 Avicennia marina HOM05D004284 ORTHO05D006610 1.8e-16 90.5 40 95.0
Lj1g0012810 Lotus japonicus HOM05D004284 ORTHO05D006610 2.4e-16 90.1 40 90.0
Ca_15330_v3 Cicer arietinum L. HOM05D004284 ORTHO05D006610 3.2e-16 89.7 40 90.0
arahy.Tifrunner.gnm1.ann1.6AD899 Arachis hypogaea HOM05D004284 ORTHO05D006610 4.1e-16 89.4 40 90.0
Lj5A188T39 Lonicera japonica HOM05D004284 ORTHO05D006610 4.1e-16 89.4 40 92.5
DCAR_022791 Daucus carota HOM05D004284 ORTHO05D006610 5.4e-16 89.0 40 90.0
Lalb_Chr11g0061291 Lupinus albus HOM05D004284 ORTHO05D006610 5.4e-16 89.0 40 87.5
Medtr3g117580 Medicago truncatula HOM05D004284 ORTHO05D006610 5.4e-16 89.0 40 90.0
Psat5g003800 Pisum sativum HOM05D004284 ORTHO05D006610 5.4e-16 89.0 40 90.0
MBI05_g26520_MAGBIO Magnolia biondii HOM05D004284 ORTHO05D006610 7.0e-16 88.6 40 87.5
PGR042G3704 Punica granatum HOM05D004284 ORTHO05D006610 7.0e-16 88.6 40 92.5
Sc18g0005440 Simmondsia chinensis HOM05D004284 ORTHO05D006610 7.0e-16 88.6 40 92.5
Actinidia00120 Actinidia chinensis HOM05D004284 ORTHO05D006610 9.2e-16 88.2 40 90.0
Actinidia20651 Actinidia chinensis HOM05D004284 ORTHO05D006610 9.2e-16 88.2 40 90.0
arahy.Tifrunner.gnm1.ann1.835YPG Arachis hypogaea HOM05D004284 ORTHO05D006610 9.2e-16 88.2 40 87.5
Glyma.04G007400 Glycine max HOM05D004284 ORTHO05D006610 9.2e-16 88.2 40 90.0
TPR.G32210 Trifolium pratense HOM05D004284 ORTHO05D006610 9.2e-16 88.2 40 87.5
VMungo1309G1744 Vigna mungo HOM05D004284 ORTHO05D006610 9.2e-16 88.2 40 90.0
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 1.2e-15 87.8 40 90.0
EL10Ac9g21612 Beta vulgaris HOM05D004284 ORTHO05D006610 1.2e-15 87.8 40 90.0
COL.COLO4_10617 Corchorus olitorius HOM05D004284 ORTHO05D006610 1.2e-15 87.8 40 90.0
Thecc.02G073500 Theobroma cacao HOM05D004284 ORTHO05D006610 1.2e-15 87.8 40 90.0
vmacro02047 Vaccinium macrocarpon HOM05D004284 ORTHO05D006610 1.2e-15 87.8 40 90.0
Cc02_g16820 Coffea canephora HOM05D004284 ORTHO05D006610 1.6e-15 87.4 40 90.0
MELO3C013406.2 Cucumis melo HOM05D004284 ORTHO05D006610 1.6e-15 87.4 40 87.5
Eucgr.G01740 Eucalyptus grandis HOM05D004284 ORTHO05D006610 1.6e-15 87.4 40 87.5
Nn6g32279 Nelumbo nucifera HOM05D004284 ORTHO05D006610 1.6e-15 87.4 40 85.0
Peaxi162Scf00362g11100 Petunia axillaris HOM05D004284 ORTHO05D006610 1.6e-15 87.4 40 90.0
SGA_v2.0_scaffold58G20431 Striga asiatica HOM05D004284 ORTHO05D006610 1.6e-15 87.4 40 90.0
MD10G1062000 Malus domestica HOM05D004284 ORTHO05D006610 2.0e-15 87.0 40 90.0
Prupe.8G082800 Prunus persica HOM05D004284 ORTHO05D006610 2.0e-15 87.0 40 90.0
CSS0028050 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 2.7e-15 86.7 40 87.5
AUR62010367 Chenopodium quinoa HOM05D004284 ORTHO05D006610 2.7e-15 86.7 40 87.5
AUR62016852 Chenopodium quinoa HOM05D004284 ORTHO05D006610 2.7e-15 86.7 40 87.5
MD05G1054400 Malus domestica HOM05D004284 ORTHO05D006610 2.7e-15 86.7 41 87.8
TWI75G0546 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 2.7e-15 86.7 40 87.5
TAR376G0598 Trochodendron aralioides HOM05D004284 ORTHO05D006610 2.7e-15 86.7 40 87.5
HPP92_014972 Vanilla planifolia HOM05D004284 ORTHO05D006610 2.7e-15 86.7 40 87.5
Atru.chr5.3162 Acer truncatum HOM05D004284 ORTHO05D006610 3.5e-15 86.3 40 87.5
Atru.chr5.3174 Acer truncatum HOM05D004284 ORTHO05D006610 3.5e-15 86.3 40 87.5
Migut.B00123 Erythranthe guttata HOM05D004284 ORTHO05D006610 3.5e-15 86.3 40 87.5
Potri.009G125500 Populus trichocarpa HOM05D004284 ORTHO05D006610 3.5e-15 86.3 40 90.0
Sabra09G0096500 Salix brachista HOM05D004284 ORTHO05D006610 3.5e-15 86.3 40 90.0
TWI79G0275 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 3.5e-15 86.3 40 87.5
TWI79G1346 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 3.5e-15 86.3 40 87.5
GSVIVG01024158001 Vitis vinifera HOM05D004284 ORTHO05D006610 3.5e-15 86.3 40 90.0
CAN.G1329.2 Capsicum annuum HOM05D004284 ORTHO05D006610 4.6e-15 85.9 40 87.5
CsaV3_7G000530 Cucumis sativus L. HOM05D004284 ORTHO05D006610 4.6e-15 85.9 40 85.0
Nitab4.5_0002096g0020 Nicotiana tabacum HOM05D004284 ORTHO05D006610 4.6e-15 85.9 40 87.5
Nitab4.5_0010885g0030 Nicotiana tabacum HOM05D004284 ORTHO05D006610 4.6e-15 85.9 40 87.5
Rhsim11G0184600 Rhododendron simsii HOM05D004284 ORTHO05D006610 4.6e-15 85.9 40 87.5
Aa31LG6G16360 Aethionema arabicum HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
AL7G10770 Arabidopsis lyrata HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
AT4G38890 Arabidopsis thaliana HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
BcaNung04214 Brassica carinata HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
C01p00170 Brassica napus HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
BolC1t00022H Brassica oleracea HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
BraA01t00017Z Brassica rapa HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
Carub.0007s0074 Capsella rubella HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
CARHR247870 Cardamine hirsuta HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
Thhalv10024574m.g Eutrema salsugineum HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
Os04g0117600 Oryza sativa ssp. japonica HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
Phvul.009G002300 Phaseolus vulgaris HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 87.5
Sp7g36950 Schrenkiella parvula HOM05D004284 ORTHO05D006610 5.9e-15 85.5 40 85.0
Aqoxy3G00712 Aquilegia oxysepala HOM05D004284 ORTHO05D006610 7.8e-15 85.1 40 85.0
ECA233G5694 Erigeron canadensis HOM05D004284 ORTHO05D006610 7.8e-15 85.1 40 87.5
A01p00130 Brassica napus HOM05D004284 ORTHO05D006610 1.0e-14 84.7 40 85.0
CDE02G2842 Ceratophyllum demersum HOM05D004284 ORTHO05D006610 1.0e-14 84.7 40 85.0
Ciclev10027934m.g Citrus clementina HOM05D004284 ORTHO05D006610 1.0e-14 84.7 40 85.0
Dinv23446 Davidia involucrata HOM05D004284 ORTHO05D006610 1.0e-14 84.7 40 87.5
Manes.11G081200 Manihot esculenta HOM05D004284 ORTHO05D006610 1.0e-14 84.7 40 87.5
Solyc01g110490.4 Solanum lycopersicum HOM05D004284 ORTHO05D006610 1.0e-14 84.7 40 85.0
Sopen01g052620 Solanum pennellii HOM05D004284 ORTHO05D006610 1.0e-14 84.7 40 85.0
PGSC0003DMG400001658 Solanum tuberosum HOM05D004284 ORTHO05D006610 1.0e-14 84.7 40 85.0
Zm00001eb419910 Zea mays HOM05D004284 ORTHO05D006610 1.0e-14 84.7 40 85.0
Cfa005121 Carpinus fangiana HOM05D004284 ORTHO05D006610 1.3e-14 84.3 40 87.5
CiPaw.05G074300 Carya illinoinensis HOM05D004284 ORTHO05D006610 1.3e-14 84.3 40 85.0
Haze_02227 Corylus avellana HOM05D004284 ORTHO05D006610 1.3e-14 84.3 40 87.5
Oeu055646.2 Olea europaea HOM05D004284 ORTHO05D006610 1.3e-14 84.3 40 85.0
QL11p046610 Quercus lobata HOM05D004284 ORTHO05D006610 1.3e-14 84.3 40 85.0
CSS0013523 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 1.7e-14 84.0 40 85.0
CSS0041983 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 1.7e-14 84.0 40 85.0
HanXRQChr17g0557281 Helianthus annuus HOM05D004284 ORTHO05D006610 1.7e-14 84.0 40 87.5
Cpa.g.sc150.5 Carica papaya HOM05D004284 ORTHO05D006610 2.3e-14 83.6 40 82.5
Duzib132G0815 Durio zibethinus HOM05D004284 ORTHO05D006610 2.3e-14 83.6 40 85.0
Gohir.A13G086645 Gossypium hirsutum HOM05D004284 ORTHO05D006610 2.3e-14 83.6 40 85.0
Gohir.D13G090800 Gossypium hirsutum HOM05D004284 ORTHO05D006610 2.3e-14 83.6 40 85.0
Gorai.001G243900 Gossypium raimondii HOM05D004284 ORTHO05D006610 2.3e-14 83.6 40 85.0
RcHm_v2.0_Chr6g0268371 Rosa chinensis HOM05D004284 ORTHO05D006610 2.3e-14 83.6 40 85.0
FAN15G2871 Fragaria x ananassa HOM05D004284 ORTHO05D006610 3.0e-14 83.2 40 82.5
FAN20G0619 Fragaria x ananassa HOM05D004284 ORTHO05D006610 3.0e-14 83.2 40 82.5
RcHm_v2.0_Chr6g0271661 Rosa chinensis HOM05D004284 ORTHO05D006610 3.0e-14 83.2 40 82.5
CANSAT11G1394 Cannabis sativa HOM05D004284 ORTHO05D006610 5.0e-14 82.4 40 82.5
Sed0001411 Sechium edule HOM05D004284 ORTHO05D006610 5.0e-14 82.4 40 80.0
THA.LOC104824786 Tarenaya hassleriana HOM05D004284 ORTHO05D006610 5.0e-14 82.4 40 82.5
vmacro22697 Vaccinium macrocarpon HOM05D004284 ORTHO05D006610 5.0e-14 82.4 62 64.5
Duzib052G1007 Durio zibethinus HOM05D004284 ORTHO05D006610 8.6e-14 81.6 40 82.5
CSS0003810 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 1.1e-13 81.3 40 82.5
CSS0015842 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D003107 1.1e-13 81.3 40 82.5
CSS0029377 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D003107 1.1e-13 81.3 40 82.5
Lsat_1_v5_gn_8_126921 Lactuca sativa HOM05D004284 ORTHO05D006610 1.1e-13 81.3 40 82.5
AagrBONN_evm.TU.Sc2ySwM_228.2393 Anthoceros agrestis HOM05D004284 ORTHO05D006610 1.5e-13 80.9 40 80.0
FvH4_2g10690 Fragaria vesca HOM05D004284 ORTHO05D006610 1.5e-13 80.9 40 82.5
Pp3c4_14410 Physcomitrium patens HOM05D004284 ORTHO05D006610 3.3e-13 79.7 40 80.0
SMO119G0149 Selaginella moellendorffii HOM05D004284 ORTHO05D006610 3.3e-13 79.7 40 77.5
PSO675G4636 Papaver somniferum HOM05D004284 ORTHO05D006610 4.3e-13 79.3 40 80.0
RcHm_v2.0_Chr6g0268461 Rosa chinensis HOM05D004284 ORTHO05D006610 4.3e-13 79.3 41 78.0
PSO541G2222 Papaver somniferum HOM05D004284 ORTHO05D006610 5.6e-13 79.0 40 80.0
SEGI_09605 Sequoiadendron giganteum HOM05D004284 ORTHO05D006610 2.1e-12 77.0 40 80.0
CBR_g29609 Chara braunii HOM05D004284 ORTHO05D006610 2.8e-12 76.6 40 72.5
Cre04.g229948 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D006610 1.0e-11 74.7 40 72.5
Mapoly0159s0020 Marchantia polymorpha HOM05D004284 ORTHO05D006610 1.0e-11 74.7 40 75.0
MCO09G016 Micromonas commoda HOM05D004284 ORTHO05D006610 5.2e-11 72.4 40 70.0
ClCG02G004440 Citrullus lanatus HOM05D004284 ORTHO05D006610 6.8e-11 72.0 34 85.3
Haze_26610 Corylus avellana HOM05D004284 ORTHO05D006610 5.8e-10 68.9 40 62.5
MCO16G514 Micromonas commoda HOM05D004284 ORTHO05D006610 2.4e-08 63.5 40 62.5
PRCOL_00002812 Prasinoderma coloniale HOM05D004284 ORTHO05D006610 1.0e-06 58.2 40 52.5


User provided reference genes

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