Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.4e-248 862.4 428 100.0
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 4.6e-114 415.6 384 59.6
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 1.0e-113 414.5 385 59.5
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 6.6e-113 411.8 384 59.1
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.9e-112 410.2 390 58.7
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 3.3e-112 409.5 387 58.4
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 4.3e-112 409.1 389 59.1
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 1.2e-111 407.5 386 58.8
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 2.8e-111 406.4 389 57.6
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.8e-111 406.4 389 58.1
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 4.7e-111 405.6 390 57.9
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.2e-111 405.2 390 57.9
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.4e-110 404.1 390 57.7
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.4e-110 404.1 433 55.0
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 3.1e-110 402.9 387 58.4
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 4.0e-110 402.5 382 60.5
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 4.0e-110 402.5 418 56.0
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 5.2e-110 402.1 384 57.6
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 5.2e-110 402.1 390 57.7
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 5.2e-110 402.1 392 57.7
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 6.8e-110 401.7 387 58.4
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 6.8e-110 401.7 387 58.1
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 8.9e-110 401.4 384 57.8
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 1.5e-109 400.6 387 57.1
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 2.0e-109 400.2 389 57.6
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 2.0e-109 400.2 389 58.4
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 2.6e-109 399.8 390 58.5
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.6e-109 399.8 389 57.3
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 2.6e-109 399.8 390 57.2
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 7.5e-109 398.3 384 56.2
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 9.9e-109 397.9 390 56.9
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 9.9e-109 397.9 385 57.4
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 2.2e-108 396.7 385 57.1
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 2.2e-108 396.7 390 56.9
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 6.4e-108 395.2 376 58.0
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 8.3e-108 394.8 379 57.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 8.3e-108 394.8 374 57.5
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.4e-107 394.0 386 56.7
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 1.4e-107 394.0 384 58.3
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 2.4e-107 393.3 388 58.2
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 4.1e-107 392.5 381 57.7
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.1e-107 392.5 385 56.6
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 5.4e-107 392.1 390 56.4
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 5.4e-107 392.1 390 56.9
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 5.4e-107 392.1 388 56.7
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 9.2e-107 391.3 389 56.0
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 9.2e-107 391.3 379 58.6
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 9.2e-107 391.3 384 56.8
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 9.2e-107 391.3 384 57.6
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.2e-106 391.0 390 56.2
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 2.7e-106 389.8 385 56.6
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 2.7e-106 389.8 382 56.8
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 3.5e-106 389.4 432 52.3
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 4.6e-106 389.0 391 54.0
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 7.8e-106 388.3 414 54.1
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 7.8e-106 388.3 386 56.7
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.0e-105 387.9 390 55.9
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 1.0e-105 387.9 382 57.1
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.3e-105 387.5 390 56.2
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.3e-105 387.5 390 56.2
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 1.7e-105 387.1 390 55.9
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 2.3e-105 386.7 382 56.5
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 2.3e-105 386.7 382 56.5
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 3.0e-105 386.3 393 55.7
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 3.9e-105 386.0 373 58.2
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 3.9e-105 386.0 393 55.5
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 1.5e-104 384.0 382 56.3
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.5e-104 384.0 382 56.3
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 1.5e-104 384.0 382 56.3
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.5e-104 384.0 390 54.4
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 1.9e-104 383.6 382 56.0
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 1.9e-104 383.6 382 56.8
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 1.9e-104 383.6 387 55.0
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 2.5e-104 383.3 382 56.3
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.5e-104 383.3 391 55.0
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 2.5e-104 383.3 387 55.6
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 3.3e-104 382.9 385 56.1
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 3.3e-104 382.9 388 55.9
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 4.3e-104 382.5 387 57.4
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 7.3e-104 381.7 382 55.8
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 7.3e-104 381.7 382 56.5
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 9.5e-104 381.3 390 55.1
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.6e-103 380.6 382 56.0
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.6e-103 380.6 413 52.8
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.8e-103 379.8 377 56.8
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 4.7e-103 379.0 382 56.0
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 4.7e-103 379.0 382 56.8
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 6.2e-103 378.6 386 55.4
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.1e-102 377.9 382 56.0
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.1e-102 377.9 383 55.9
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.4e-102 377.5 386 55.2
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 1.8e-102 377.1 382 55.8
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 3.1e-102 376.3 387 54.8
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 4.0e-102 375.9 385 55.3
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 5.2e-102 375.6 387 55.3
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 5.2e-102 375.6 393 53.4
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 5.2e-102 375.6 355 58.6
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 1.2e-101 374.4 382 55.5
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.2e-101 374.4 390 53.8
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 2.6e-101 373.2 375 55.5
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 5.8e-101 372.1 386 54.7
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 9.9e-101 371.3 382 55.0
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 2.2e-100 370.2 419 51.1
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.8e-100 369.4 407 51.4
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.4e-99 367.5 414 52.9
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.6e-98 364.0 387 53.7
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.0e-97 361.3 297 64.0
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 1.9e-96 357.1 381 53.8
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 4.3e-96 355.9 387 52.5
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 4.3e-96 355.9 387 52.5
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 7.3e-96 355.1 411 50.4
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 2.8e-95 353.2 388 52.1
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.4e-94 350.9 304 61.8
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 7.6e-93 345.1 386 51.8
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.7e-92 344.0 259 71.4
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 2.4e-91 340.1 391 49.4
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 4.3e-88 329.3 229 71.2
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 5.6e-88 328.9 353 55.0
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.1e-86 324.7 389 49.4
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.4e-86 324.3 384 51.0
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 2.0e-85 320.5 590 37.8
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 4.5e-85 319.3 403 46.7
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 2.2e-84 317.0 374 48.7
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.1e-83 314.7 377 49.9
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 7.1e-83 312.0 234 67.5
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.9e-80 303.9 387 46.5
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 2.1e-74 283.9 233 65.7
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 3.0e-73 280.0 442 40.0
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.3e-72 276.6 420 43.6
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.3e-72 276.2 185 73.0
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.3e-71 274.6 376 42.0
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 4.8e-71 272.7 363 45.7
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 1.9e-67 260.8 375 43.7
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.5e-67 260.4 239 59.8
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 5.5e-67 259.2 328 48.5
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 1.0e-60 238.4 385 38.7
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.0e-56 224.2 323 44.6
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.2e-52 210.7 205 53.7
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.7e-50 203.0 201 53.2
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 7.9e-50 202.2 378 35.7
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 1.5e-48 198.0 232 50.9
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 8.8e-41 172.2 138 65.9
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 2.2e-39 167.5 366 35.2
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 2.8e-39 167.2 359 35.9
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 8.2e-39 165.6 146 62.3
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 1.9e-35 154.5 387 31.8
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 2.2e-31 141.0 108 63.0
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 1.1e-22 112.1 162 40.1
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 4.5e-21 106.7 62 77.4
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 7.2e-19 99.4 184 39.1
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.0e-17 94.0 50 84.0
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 2.5e-11 74.3 90 51.1
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 2.8e-10 70.9 123 38.2
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.7e-07 61.6 140 32.9
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 6.4e-07 59.7 147 30.6
SHI03168 Sapria himalayana HOM05D000616 ORTHO05D000233 2.4e-06 57.8 37 67.6


User provided reference genes

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