Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02699 Sapria himalayana HOM05D003301 ORTHO05D003665 4.2e-159 564.7 298 100.0
Hund10083 Selenicereus undatus HOM05D003301 ORTHO05D003665 1.9e-90 336.7 235 70.6
PGSC0003DMG400002563 Solanum tuberosum HOM05D003301 ORTHO05D003665 1.8e-88 330.1 278 63.3
THA.LOC104804009 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 9.6e-87 324.3 235 69.8
unitig_63.g29476 Utricularia gibba HOM05D003301 ORTHO05D003665 1.6e-86 323.6 256 64.5
Cfa011406 Carpinus fangiana HOM05D003301 ORTHO05D003665 1.4e-85 320.5 235 67.7
GSVIVG01015317001 Vitis vinifera HOM05D003301 ORTHO05D003665 2.4e-85 319.7 237 69.2
Lalb_Chr06g0174721 Lupinus albus HOM05D003301 ORTHO05D003665 3.1e-85 319.3 237 66.7
unitig_62.g23581 Utricularia gibba HOM05D003301 ORTHO05D003665 1.2e-84 317.4 239 72.8
Phvul.004G048400 Phaseolus vulgaris HOM05D003301 ORTHO05D003665 1.5e-84 317.0 237 67.1
Sc25g0000530 Simmondsia chinensis HOM05D003301 ORTHO05D003665 2.6e-84 316.2 235 67.2
Eucgr.D00685 Eucalyptus grandis HOM05D003301 ORTHO05D003665 5.9e-84 315.1 235 74.0
Haze_23981 Corylus avellana HOM05D003301 ORTHO05D003665 3.8e-83 312.4 231 66.7
DCAR_003903 Daucus carota HOM05D003301 ORTHO05D003665 6.5e-83 311.6 235 67.2
EL10Ac8g18344 Beta vulgaris HOM05D003301 ORTHO05D003665 1.4e-82 310.5 235 66.8
HanXRQChr04g0114411 Helianthus annuus HOM05D003301 ORTHO05D003665 1.9e-82 310.1 237 72.6
Lalb_Chr02g0158441 Lupinus albus HOM05D003301 ORTHO05D003665 2.7e-81 306.2 237 70.9
Sed0014147 Sechium edule HOM05D003301 ORTHO05D003665 1.3e-80 303.9 237 72.2
THA.LOC104814565 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 3.0e-80 302.8 232 66.4
Thecc.09G102400 Theobroma cacao HOM05D003301 ORTHO05D003665 5.1e-80 302.0 237 70.0
Duzib150G0839 Durio zibethinus HOM05D003301 ORTHO05D003665 1.5e-79 300.4 239 68.6
FAN28G0298 Fragaria x ananassa HOM05D003301 ORTHO05D003665 1.3e-78 297.4 237 69.2
Gohir.D03G058800 Gossypium hirsutum HOM05D003301 ORTHO05D003665 1.6e-78 297.0 235 61.7
Gorai.003G062700 Gossypium raimondii HOM05D003301 ORTHO05D003665 1.6e-78 297.0 235 61.7
FAN23G1082 Fragaria x ananassa HOM05D003301 ORTHO05D003665 2.2e-78 296.6 235 68.9
FvH4_1g05910 Fragaria vesca HOM05D003301 ORTHO05D003665 2.8e-78 296.2 237 68.8
FAN19G3015 Fragaria x ananassa HOM05D003301 ORTHO05D003665 2.8e-78 296.2 237 68.8
FAN26G2473 Fragaria x ananassa HOM05D003301 ORTHO05D003665 2.8e-78 296.2 237 68.8
Thecc.06G098300 Theobroma cacao HOM05D003301 ORTHO05D003665 2.8e-78 296.2 235 67.7
Potri.018G086300 Populus trichocarpa HOM05D003301 ORTHO05D003665 4.8e-78 295.4 237 71.7
Gohir.A02G118200 Gossypium hirsutum HOM05D003301 ORTHO05D003665 8.2e-78 294.7 235 61.3
Lalb_Chr06g0174741 Lupinus albus HOM05D003301 ORTHO05D003665 1.1e-77 294.3 237 69.2
Eucgr.C01007 Eucalyptus grandis HOM05D003301 ORTHO05D003665 5.3e-77 292.0 237 70.0
VMungo0464G1563 Vigna mungo HOM05D003301 ORTHO05D003665 5.3e-77 292.0 235 69.4
AT2G20000 Arabidopsis thaliana HOM05D003301 ORTHO05D003665 6.9e-77 291.6 235 69.8
Thhalv10001914m.g Eutrema salsugineum HOM05D003301 ORTHO05D003665 2.0e-76 290.0 235 70.2
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 2.0e-76 290.0 237 70.9
Duzib187G0026 Durio zibethinus HOM05D003301 ORTHO05D003665 4.5e-76 288.9 237 68.4
FAN26G0830 Fragaria x ananassa HOM05D003301 ORTHO05D003665 2.2e-75 286.6 251 64.9
Manes.03G025500 Manihot esculenta HOM05D003301 ORTHO05D003665 1.9e-74 283.5 237 69.6
AL3G48120 Arabidopsis lyrata HOM05D003301 ORTHO05D003665 6.1e-73 278.5 234 67.9
vmacro05243 Vaccinium macrocarpon HOM05D003301 ORTHO05D003665 1.0e-72 277.7 237 67.5
CDE05G0835 Ceratophyllum demersum HOM05D003301 ORTHO05D003665 2.3e-72 276.6 237 65.0
Ciclev10007544m.g Citrus clementina HOM05D003301 ORTHO05D003665 2.0e-71 273.5 237 67.5
Migut.I00703 Erythranthe guttata HOM05D003301 ORTHO05D003665 1.7e-70 270.4 236 67.8
SalBow1G8065 Salvia bowleyana HOM05D003301 ORTHO05D003665 1.7e-70 270.4 235 67.7
SGA_v2.0_scaffold37G14722 Striga asiatica HOM05D003301 ORTHO05D003665 1.7e-70 270.4 235 66.8
THA.LOC104810537 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 2.8e-70 269.6 237 54.9
Lj1C1172G8 Lonicera japonica HOM05D003301 ORTHO05D003665 3.7e-70 269.2 237 67.5
Dinv17765 Davidia involucrata HOM05D003301 ORTHO05D003665 8.2e-70 268.1 234 67.9
SGA_v2.0_scaffold5G02773 Striga asiatica HOM05D003301 ORTHO05D003665 1.8e-69 266.9 238 66.0
Carub.0003s3424 Capsella rubella HOM05D003301 ORTHO05D003665 2.4e-69 266.5 235 66.0
Oeu053267.2 Olea europaea HOM05D003301 ORTHO05D003665 6.9e-69 265.0 235 66.0
Cfa003198 Carpinus fangiana HOM05D003301 ORTHO05D003665 2.0e-68 263.5 237 64.1
ECA236G0920 Erigeron canadensis HOM05D003301 ORTHO05D003665 2.0e-68 263.5 235 66.0
Glyma.18G279500 Glycine max HOM05D003301 ORTHO05D003665 5.9e-68 261.9 237 65.0
Manes.16G110400 Manihot esculenta HOM05D003301 ORTHO05D003665 2.2e-67 260.0 237 65.8
MSTRG.22791 Avicennia marina HOM05D003301 ORTHO05D003665 2.9e-67 259.6 235 64.3
AUR62029540 Chenopodium quinoa HOM05D003301 ORTHO05D003665 2.5e-66 256.5 235 64.3
AUR62034804 Chenopodium quinoa HOM05D003301 ORTHO05D003665 2.5e-66 256.5 235 64.3
EL10Ac5g11341 Beta vulgaris HOM05D003301 ORTHO05D003665 3.2e-66 256.1 235 64.3
Cc02_g31350 Coffea canephora HOM05D003301 ORTHO05D003665 1.2e-65 254.2 237 65.0
RcHm_v2.0_Chr2g0091631 Rosa chinensis HOM05D003301 ORTHO05D003665 2.1e-65 253.4 237 55.7
Hund02477 Selenicereus undatus HOM05D003301 ORTHO05D003665 3.6e-65 252.7 249 55.0
ATR0605G018 Amborella trichopoda HOM05D003301 ORTHO05D003665 6.1e-65 251.9 235 63.0
CAN.G303.59 Capsicum annuum HOM05D003301 ORTHO05D003665 1.0e-64 251.1 237 62.0
MELO3C024685.2 Cucumis melo HOM05D003301 ORTHO05D003665 1.0e-64 251.1 237 64.6
DCAR_007883 Daucus carota HOM05D003301 ORTHO05D003665 1.8e-64 250.4 234 64.5
Rhsim10G0110900 Rhododendron simsii HOM05D003301 ORTHO05D003665 1.8e-64 250.4 269 58.4
Pp3c11_22970 Physcomitrium patens HOM05D003301 ORTHO05D003665 3.9e-64 249.2 232 53.9
PGR142G1632 Punica granatum HOM05D003301 ORTHO05D003665 3.9e-64 249.2 235 63.4
Sed0012844 Sechium edule HOM05D003301 ORTHO05D003665 5.2e-64 248.8 237 64.1
Actinidia30928 Actinidia chinensis HOM05D003301 ORTHO05D003665 1.1e-63 247.7 229 65.9
CSS0004573 Camellia sinensis var. sinensis HOM05D003301 ORTHO05D003665 1.1e-63 247.7 237 63.7
Dinv11538 Davidia involucrata HOM05D003301 ORTHO05D003665 1.1e-63 247.7 237 64.1
ClCG06G009040 Citrullus lanatus HOM05D003301 ORTHO05D003665 2.0e-63 246.9 237 63.7
CsaV3_1G045710 Cucumis sativus L. HOM05D003301 ORTHO05D003665 2.0e-63 246.9 237 63.7
Lj2g0018429 Lotus japonicus HOM05D003301 ORTHO05D003665 4.4e-63 245.7 237 62.0
Psat1g063480 Pisum sativum HOM05D003301 ORTHO05D003665 1.3e-62 244.2 237 61.2
Actinidia05765 Actinidia chinensis HOM05D003301 ORTHO05D003665 1.7e-62 243.8 237 63.3
Haze_25809 Corylus avellana HOM05D003301 ORTHO05D003665 2.2e-62 243.4 237 61.6
CiPaw.01G151200 Carya illinoinensis HOM05D003301 ORTHO05D003665 2.8e-62 243.0 188 66.5
CiPaw.02G084900 Carya illinoinensis HOM05D003301 ORTHO05D003665 2.8e-62 243.0 241 61.0
Gohir.D13G201100 Gossypium hirsutum HOM05D003301 ORTHO05D003665 2.8e-62 243.0 235 60.9
Nn8g39106 Nelumbo nucifera HOM05D003301 ORTHO05D003665 6.3e-62 241.9 236 61.9
Solyc03g061600.4 Solanum lycopersicum HOM05D003301 ORTHO05D003665 6.3e-62 241.9 241 61.4
TPR.G9679 Trifolium pratense HOM05D003301 ORTHO05D003665 8.2e-62 241.5 235 61.7
Gorai.009G027300 Gossypium raimondii HOM05D003301 ORTHO05D003665 1.1e-61 241.1 237 60.8
Lsat_1_v5_gn_7_28060 Lactuca sativa HOM05D003301 ORTHO05D003665 1.1e-61 241.1 237 62.0
CAN.G165.27 Capsicum annuum HOM05D003301 ORTHO05D003665 1.4e-61 240.7 237 61.6
Oeu041533.1 Olea europaea HOM05D003301 ORTHO05D003665 1.4e-61 240.7 235 62.1
Gohir.A05G025700 Gossypium hirsutum HOM05D003301 ORTHO05D003665 1.8e-61 240.4 237 60.3
Gohir.D05G027200 Gossypium hirsutum HOM05D003301 ORTHO05D003665 1.8e-61 240.4 237 60.3
Gorai.013G229900 Gossypium raimondii HOM05D003301 ORTHO05D003665 1.8e-61 240.4 235 60.4
Sopen03g014540 Solanum pennellii HOM05D003301 ORTHO05D003665 1.8e-61 240.4 237 62.0
CBR_g102 Chara braunii HOM05D003301 ORTHO05D003665 5.3e-61 238.8 235 52.8
Nitab4.5_0005427g0040 Nicotiana tabacum HOM05D003301 ORTHO05D003665 5.3e-61 238.8 241 60.6
Medtr7g019230 Medicago truncatula HOM05D003301 ORTHO05D003665 9.1e-61 238.0 237 60.8
COL.COLO4_34768 Corchorus olitorius HOM05D003301 ORTHO05D003665 1.6e-60 237.3 237 59.9
QL09p023443 Quercus lobata HOM05D003301 ORTHO05D003665 2.6e-60 236.5 237 61.6
Ca_20732_v3 Cicer arietinum L. HOM05D003301 ORTHO05D003665 3.5e-60 236.1 234 60.3
VMungo1383G1642 Vigna mungo HOM05D003301 ORTHO05D003665 3.5e-60 236.1 237 60.3
PSO210G4003 Papaver somniferum HOM05D003301 ORTHO05D003665 1.3e-59 234.2 237 60.8
Ca_06723_v3 Cicer arietinum L. HOM05D003301 ORTHO05D003665 1.7e-59 233.8 237 60.3
Peaxi162Scf01003g00120 Petunia axillaris HOM05D003301 ORTHO05D003665 6.5e-59 231.9 241 58.5
Aa31LG8G16930 Aethionema arabicum HOM05D003301 ORTHO05D003665 8.5e-59 231.5 235 60.9
CANSAT56G0288 Cannabis sativa HOM05D003301 ORTHO05D003665 8.5e-59 231.5 237 60.3
Rhsim10G0109100 Rhododendron simsii HOM05D003301 ORTHO05D003665 8.5e-59 231.5 268 55.6
HanXRQChr15g0482141 Helianthus annuus HOM05D003301 ORTHO05D003665 1.1e-58 231.1 237 59.5
PSO210G4840 Papaver somniferum HOM05D003301 ORTHO05D003665 1.1e-58 231.1 237 59.9
Glyma.19G042200 Glycine max HOM05D003301 ORTHO05D003665 3.2e-58 229.6 235 59.1
Sp3g33320 Schrenkiella parvula HOM05D003301 ORTHO05D003665 3.2e-58 229.6 235 60.0
Glyma.13G049400 Glycine max HOM05D003301 ORTHO05D003665 4.2e-58 229.2 235 59.1
Nn6g35303 Nelumbo nucifera HOM05D003301 ORTHO05D003665 5.5e-58 228.8 237 59.5
Ah.02g114730 Amaranthus hybridus HOM05D003301 ORTHO05D003665 9.4e-58 228.0 223 61.9
Lj1g0006963 Lotus japonicus HOM05D003301 ORTHO05D003665 1.2e-57 227.6 237 59.5
COL.COLO4_30492 Corchorus olitorius HOM05D003301 ORTHO05D003665 1.8e-56 223.8 160 65.6
arahy.Tifrunner.gnm1.ann1.JNCQ1V Arachis hypogaea HOM05D003301 ORTHO05D003665 2.3e-56 223.4 235 59.1
arahy.Tifrunner.gnm1.ann1.M26Z43 Arachis hypogaea HOM05D003301 ORTHO05D003665 2.3e-56 223.4 235 59.1
TAR383G0497 Trochodendron aralioides HOM05D003301 ORTHO05D003665 2.3e-56 223.4 241 58.1
CARHR110420 Cardamine hirsuta HOM05D003301 ORTHO05D003665 5.2e-56 222.2 235 59.6
TAR626G1939 Trochodendron aralioides HOM05D003301 ORTHO05D003665 8.8e-56 221.5 221 62.4
HanXRQChr15g0482131 Helianthus annuus HOM05D003301 ORTHO05D003665 2.0e-55 220.3 227 59.5
Os06g0622500 Oryza sativa ssp. japonica HOM05D003301 ORTHO05D003665 3.7e-54 216.1 233 57.5
Nitab4.5_0003462g0010 Nicotiana tabacum HOM05D003301 ORTHO05D003665 1.1e-53 214.5 225 59.6
Peaxi162Scf00090g02113 Petunia axillaris HOM05D003301 ORTHO05D003665 4.1e-53 212.6 225 57.8
TPR.G3256 Trifolium pratense HOM05D003301 ORTHO05D003665 4.1e-53 212.6 237 56.1
Medtr6g016680 Medicago truncatula HOM05D003301 ORTHO05D003665 7.0e-53 211.8 237 56.1
Atru.chr7.1441_Atru.chr7.1442 Acer truncatum HOM05D003301 ORTHO05D003665 1.2e-52 211.1 237 57.4
AT3G16320 Arabidopsis thaliana HOM05D003301 ORTHO05D003665 2.7e-52 209.9 233 53.2
AL3G29070 Arabidopsis lyrata HOM05D003301 ORTHO05D003665 4.5e-52 209.1 233 52.8
CDE05G0395 Ceratophyllum demersum HOM05D003301 ORTHO05D003665 5.9e-52 208.8 161 64.0
Sp3g14690 Schrenkiella parvula HOM05D003301 ORTHO05D003665 1.3e-51 207.6 234 55.6
BcaB03g16786 Brassica carinata HOM05D003301 ORTHO05D003665 1.7e-51 207.2 235 56.6
BcaC06g36672 Brassica carinata HOM05D003301 ORTHO05D003665 1.7e-51 207.2 235 56.6
A07p00650 Brassica napus HOM05D003301 ORTHO05D003665 1.7e-51 207.2 235 56.6
C07p01500 Brassica napus HOM05D003301 ORTHO05D003665 1.7e-51 207.2 235 56.6
BolC7t40564H Brassica oleracea HOM05D003301 ORTHO05D003665 1.7e-51 207.2 235 56.6
BraA07t27863Z Brassica rapa HOM05D003301 ORTHO05D003665 1.7e-51 207.2 235 56.6
CARHR091530 Cardamine hirsuta HOM05D003301 ORTHO05D003665 5.0e-51 205.7 232 55.2
Aa31LG8G3460 Aethionema arabicum HOM05D003301 ORTHO05D003665 3.0e-48 196.4 232 53.0
Thhalv10021943m.g Eutrema salsugineum HOM05D003301 ORTHO05D003665 3.0e-48 196.4 232 53.0
Carub.0003s1607 Capsella rubella HOM05D003301 ORTHO05D003665 8.8e-48 194.9 234 53.0
A05p33220 Brassica napus HOM05D003301 ORTHO05D003665 2.2e-46 190.3 234 53.4
BraA05t22145Z Brassica rapa HOM05D003301 ORTHO05D003665 2.2e-46 190.3 234 53.4
BcaB06g25725 Brassica carinata HOM05D003301 ORTHO05D003665 1.1e-45 188.0 234 52.6
BcaC05g28893 Brassica carinata HOM05D003301 ORTHO05D003665 1.1e-45 188.0 234 53.0
BolC5t33768H Brassica oleracea HOM05D003301 ORTHO05D003665 1.1e-45 188.0 234 53.0
C05p50180 Brassica napus HOM05D003301 ORTHO05D003665 7.0e-45 185.3 234 52.6
Lsat_1_v5_gn_5_43220 Lactuca sativa HOM05D003301 ORTHO05D003665 3.5e-44 183.0 149 71.1
Pp3c7_3760 Physcomitrium patens HOM05D003301 ORTHO05D003665 1.5e-42 177.6 232 49.6
AagrBONN_evm.TU.Sc2ySwM_117.2748 Anthoceros agrestis HOM05D003301 ORTHO05D003665 5.2e-40 169.1 263 45.2
Mapoly0024s0107 Marchantia polymorpha HOM05D003301 ORTHO05D003665 5.2e-40 169.1 233 48.9
Gohir.A13G196000 Gossypium hirsutum HOM05D003301 ORTHO05D003665 1.2e-39 167.9 186 57.0
SMO118G0311 Selaginella moellendorffii HOM05D003301 ORTHO05D003665 3.4e-39 166.4 233 48.9
PRCOL_00001480 Prasinoderma coloniale HOM05D003301 ORTHO05D003665 1.7e-38 164.1 240 45.4
Phvul.008G021500 Phaseolus vulgaris HOM05D003301 ORTHO05D003665 4.9e-38 162.5 237 47.7
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.1e-37 161.4 241 48.1
Duzib168G1984 Durio zibethinus HOM05D003301 ORTHO05D003665 2.3e-32 143.7 237 44.7
TWI32G1357 Tripterygium wilfordii HOM05D003301 ORTHO05D003665 1.5e-31 141.0 237 45.6
Potri.006G164000 Populus trichocarpa HOM05D003301 ORTHO05D003665 7.5e-31 138.7 237 44.7
MCO09G600 Micromonas commoda HOM05D003301 ORTHO05D003665 2.9e-30 136.7 233 42.5
PGSC0003DMG400033320 Solanum tuberosum HOM05D003301 ORTHO05D003665 1.4e-29 134.4 103 66.0
Prupe.7G222000 Prunus persica HOM05D003301 ORTHO05D003665 2.7e-28 130.2 233 42.5
Cpa.g.sc40.52 Carica papaya HOM05D003301 ORTHO05D003665 3.0e-27 126.7 235 43.0
MD02G1061000 Malus domestica HOM05D003301 ORTHO05D003665 7.3e-26 122.1 232 40.9
SEGI_02735 Sequoiadendron giganteum HOM05D003301 ORTHO05D003665 2.8e-25 120.2 235 41.3
Aqoxy7G03886 Aquilegia oxysepala HOM05D003301 ORTHO05D003665 1.0e-24 118.2 237 41.4
Cpa.g.sc109.13 Carica papaya HOM05D003301 ORTHO05D003665 5.2e-24 115.9 94 58.5
Zm00001eb144740 Zea mays HOM05D003301 ORTHO05D003665 3.2e-21 106.7 231 38.1
MD15G1194500 Malus domestica HOM05D003301 ORTHO05D003665 1.0e-19 101.7 218 39.0
Cfa001183 Carpinus fangiana HOM05D003301 ORTHO05D003665 1.2e-17 94.7 74 63.5
RcHm_v2.0_Chr2g0091551 Rosa chinensis HOM05D003301 ORTHO05D003665 1.5e-15 87.8 120 44.2
Medtr6g016745 Medicago truncatula HOM05D003301 ORTHO05D003665 3.4e-15 86.7 77 61.0
Phvul.001G130400 Phaseolus vulgaris HOM05D003301 ORTHO05D003665 5.8e-15 85.9 76 60.5
Psat3g146520 Pisum sativum HOM05D003301 ORTHO05D003665 3.7e-14 83.2 43 83.7
Cpa.g.sc109.17 Carica papaya HOM05D003301 ORTHO05D003665 4.9e-14 82.8 42 88.1
Cre17.g740510 Chlamydomonas reinhardtii HOM05D003301 ORTHO05D003665 3.1e-08 63.5 232 32.3
C04p54040 Brassica napus HOM05D003301 ORTHO05D003665 4.0e-08 63.2 47 55.3
MBI01_g40850_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 4.0e-08 63.2 171 28.1
MBI01_g33693_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 3.8e-06 56.6 205 24.9
Cfa022856 Carpinus fangiana HOM05D003301 ORTHO05D003665 6.4e-06 55.8 41 53.7


User provided reference genes

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