Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.1e-251 872.8 439 100.0
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 1.2e-125 454.1 471 54.8
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 2.0e-125 453.4 466 55.2
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 4.5e-125 452.2 470 53.8
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 5.9e-125 451.8 448 56.9
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 7.7e-125 451.4 395 61.5
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 2.2e-124 449.9 375 63.2
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 2.9e-124 449.5 361 66.2
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 3.8e-124 449.1 447 57.3
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 8.5e-124 448.0 417 59.0
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 8.5e-124 448.0 466 55.8
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 1.5e-123 447.2 349 65.9
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 2.5e-123 446.4 471 53.7
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.2e-123 445.7 340 66.8
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 5.5e-123 445.3 340 66.8
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.2e-122 444.1 340 66.5
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 1.2e-122 444.1 391 59.3
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 2.7e-122 443.0 336 66.4
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 6.1e-122 441.8 347 65.7
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 8.0e-122 441.4 341 66.0
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 8.0e-122 441.4 367 64.0
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.8e-121 440.3 358 64.0
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 2.3e-121 439.9 467 53.5
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 2.3e-121 439.9 365 63.3
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 2.3e-121 439.9 425 57.6
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 3.0e-121 439.5 505 52.1
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 6.8e-121 438.3 389 58.6
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 6.8e-121 438.3 451 56.8
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.2e-120 437.6 340 65.6
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 1.5e-120 437.2 438 54.6
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 1.5e-120 437.2 452 54.4
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 3.4e-120 436.0 447 53.5
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 3.4e-120 436.0 391 59.3
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 4.4e-120 435.6 376 62.0
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 5.7e-120 435.3 348 66.7
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 1.3e-119 434.1 402 58.2
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 1.3e-119 434.1 402 58.2
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 1.3e-119 434.1 370 60.8
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.3e-119 434.1 442 54.1
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.3e-119 434.1 436 55.3
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 1.3e-119 434.1 443 54.9
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 1.7e-119 433.7 367 60.5
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 1.7e-119 433.7 406 58.4
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.7e-119 433.7 360 62.5
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 2.2e-119 433.3 364 61.3
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 2.2e-119 433.3 435 53.3
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 4.8e-119 432.2 431 54.5
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 4.8e-119 432.2 466 52.6
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 4.8e-119 432.2 332 66.0
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 8.3e-119 431.4 448 52.9
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.1e-118 431.0 357 63.6
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 1.1e-118 431.0 337 66.2
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.4e-118 430.6 340 64.7
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 1.8e-118 430.3 339 66.4
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 1.8e-118 430.3 448 53.3
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 3.1e-118 429.5 437 53.8
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 4.1e-118 429.1 340 65.9
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 5.3e-118 428.7 372 59.4
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 7.0e-118 428.3 384 58.6
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 7.0e-118 428.3 356 62.4
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 7.0e-118 428.3 422 56.6
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 7.0e-118 428.3 428 57.0
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.2e-117 427.6 427 56.2
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 1.2e-117 427.6 360 61.9
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 1.2e-117 427.6 443 55.1
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.6e-117 427.2 427 54.6
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 2.0e-117 426.8 428 54.4
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 3.5e-117 426.0 417 55.2
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 4.5e-117 425.6 380 59.5
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 5.9e-117 425.2 388 58.0
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 1.3e-116 424.1 337 65.6
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 3.8e-116 422.5 434 55.1
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 1.9e-115 420.2 344 63.7
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 4.2e-115 419.1 345 63.2
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 9.4e-115 417.9 425 54.1
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 5.2e-113 412.1 329 65.3
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 4.4e-112 409.1 334 62.6
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 4.8e-111 405.6 340 60.3
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 7.0e-110 401.7 311 65.6
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 9.1e-110 401.4 373 56.8
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 1.2e-109 401.0 300 67.3
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 4.5e-109 399.1 392 55.6
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.5e-107 394.0 345 57.7
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 3.3e-107 392.9 339 59.3
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 1.6e-106 390.6 285 70.2
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 2.1e-106 390.2 403 52.6
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 2.3e-105 386.7 410 53.2
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 2.3e-105 386.7 332 60.2
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 4.1e-102 375.9 449 48.6
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 7.3e-99 365.2 305 63.6
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 1.8e-97 360.5 280 65.4
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.8e-97 360.5 279 65.9
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.8e-97 360.5 279 65.9
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 8.3e-95 351.7 336 56.0
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 3.5e-93 346.3 257 69.6
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 4.6e-93 345.9 340 54.4
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 1.8e-73 280.8 292 51.0
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 1.2e-72 278.1 411 40.1
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 1.3e-71 274.6 319 48.3
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 6.0e-69 265.8 176 74.4
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 1.7e-63 247.7 272 50.4
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 2.7e-61 240.4 213 62.9
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 1.1e-51 208.4 168 64.9
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 7.6e-48 195.7 182 57.7
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 3.2e-46 190.3 307 39.7
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 5.5e-46 189.5 278 43.5
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 3.9e-44 183.3 151 62.9
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 5.1e-44 183.0 306 37.6
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 8.2e-42 175.6 151 63.6
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 1.8e-36 157.9 279 37.6
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 6.7e-28 129.4 146 46.6
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 4.1e-25 120.2 284 32.0
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 2.6e-19 100.9 83 59.0
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 2.0e-16 91.3 81 51.9
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 1.1e-14 85.5 82 56.1
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.0e-12 79.0 83 42.2
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.0e-12 79.0 83 42.2
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 1.8e-12 78.2 83 41.0
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 7.5e-11 72.8 69 44.9
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 1.3e-10 72.0 69 44.9
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 1.7e-10 71.6 71 43.7
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 4.8e-10 70.1 236 29.2
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 2.4e-09 67.8 89 39.3
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 2.4e-09 67.8 89 39.3
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 7.7e-08 62.8 61 47.5
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 1.7e-07 61.6 76 52.6
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 3.8e-07 60.5 187 27.3
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 6.5e-07 59.7 168 26.8
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 1.5e-06 58.5 173 26.6
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.5e-06 58.5 165 26.7
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 1.9e-06 58.2 165 26.1
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 2.5e-06 57.8 165 25.5
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 4.2e-06 57.0 165 26.1
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 4.2e-06 57.0 172 26.7
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 5.5e-06 56.6 165 24.8
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 7.2e-06 56.2 165 26.7
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 9.4e-06 55.8 165 26.1


User provided reference genes

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