Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 0.0e+00 1287.3 623 100.0
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 2.1e-253 879.0 617 69.7
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 4.0e-252 874.8 616 68.7
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 1.7e-250 869.4 617 68.7
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 1.9e-249 865.9 616 68.8
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 3.2e-249 865.1 619 68.5
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 1.2e-248 863.2 616 67.9
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 2.7e-248 862.1 616 68.0
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 4.6e-248 861.3 603 68.5
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 1.0e-247 860.1 621 67.0
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 6.6e-247 857.4 616 67.9
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 4.3e-246 854.7 617 67.6
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 6.2e-245 850.9 616 66.6
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 6.2e-245 850.9 616 67.0
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 8.1e-245 850.5 616 66.4
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.2e-243 846.7 616 66.4
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 2.6e-243 845.5 604 67.1
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 4.4e-243 844.7 617 65.5
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 4.4e-243 844.7 609 67.5
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 7.6e-243 844.0 616 66.4
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 9.9e-243 843.6 616 66.2
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 1.3e-242 843.2 616 67.2
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 6.4e-242 840.9 599 68.3
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 1.9e-241 839.3 616 65.6
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 4.2e-241 838.2 620 66.5
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 5.4e-241 837.8 616 68.2
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 1.2e-240 836.6 613 65.9
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 2.7e-240 835.5 638 64.6
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 1.7e-239 832.8 621 65.2
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 1.1e-238 830.1 616 65.6
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 1.5e-238 829.7 616 65.9
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 1.9e-238 829.3 599 67.6
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 3.3e-238 828.6 643 63.3
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 1.6e-237 826.2 617 64.8
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 1.6e-237 826.2 627 64.3
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 2.8e-237 825.5 617 64.7
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 4.8e-237 824.7 617 65.2
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 1.1e-236 823.5 621 64.7
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 1.4e-236 823.2 621 64.6
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 1.4e-236 823.2 617 65.0
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 1.8e-236 822.8 617 64.2
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 2.4e-236 822.4 601 66.4
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 9.0e-236 820.5 616 66.7
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 1.5e-235 819.7 616 64.6
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 4.4e-235 818.1 616 65.1
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 9.9e-235 817.0 616 64.3
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 3.8e-234 815.1 617 64.3
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 6.4e-234 814.3 616 64.1
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 1.4e-233 813.1 617 64.0
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 2.4e-233 812.4 617 63.7
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 2.4e-233 812.4 621 63.6
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 3.2e-233 812.0 623 63.1
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 4.2e-233 811.6 604 65.6
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 5.4e-233 811.2 616 63.6
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 5.4e-233 811.2 616 64.1
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 9.3e-233 810.4 616 64.0
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 2.7e-232 808.9 619 65.8
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 2.7e-232 808.9 617 64.2
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 6.0e-232 807.7 616 63.8
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 7.9e-232 807.4 616 63.5
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 1.3e-231 806.6 616 63.3
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 2.3e-231 805.8 616 63.8
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 6.6e-231 804.3 616 65.4
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 1.5e-230 803.1 616 63.0
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 1.9e-230 802.7 616 63.0
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 9.6e-230 800.4 616 63.8
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 1.3e-229 800.0 616 63.8
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 1.6e-229 799.7 574 67.9
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 2.8e-229 798.9 616 63.0
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 4.0e-228 795.0 617 63.9
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 1.2e-227 793.5 617 63.7
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 1.5e-227 793.1 617 63.0
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 1.7e-226 789.6 616 64.6
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 8.4e-226 787.3 617 62.2
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 8.4e-226 787.3 626 61.7
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 8.4e-226 787.3 603 63.0
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 2.7e-224 782.3 621 62.0
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 3.5e-224 781.9 616 62.5
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 1.8e-223 779.6 618 62.0
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 5.1e-223 778.1 616 62.5
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 2.5e-222 775.8 599 61.8
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 5.6e-222 774.6 616 63.5
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 4.8e-221 771.5 619 62.4
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 1.1e-220 770.4 621 62.0
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 3.1e-220 768.8 652 58.1
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 1.0e-218 763.8 620 60.3
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 2.9e-218 762.3 621 61.5
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 4.6e-216 755.0 614 60.1
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 1.0e-215 753.8 618 59.7
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 7.9e-208 727.6 572 60.8
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 6.3e-205 718.0 566 62.9
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 6.1e-200 701.4 585 60.2
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 7.9e-200 701.0 619 56.7
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 3.0e-199 699.1 628 56.4
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 3.9e-199 698.7 573 59.3
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 6.7e-199 698.0 620 56.9
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 1.5e-198 696.8 620 57.3
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 1.8e-196 689.9 621 58.1
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 2.6e-195 686.0 623 56.0
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 7.7e-187 657.9 522 60.2
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 1.1e-185 654.1 622 52.4
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 1.0e-178 630.9 621 51.4
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 1.1e-177 627.5 636 52.8
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 2.1e-176 623.2 551 56.1
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 7.5e-174 614.8 632 52.7
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 7.7e-171 604.7 610 52.1
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 6.8e-151 538.5 639 45.9
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 4.4e-150 535.8 384 67.2
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 1.7e-146 523.9 714 42.2
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 2.2e-125 453.8 742 38.9
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 1.2e-115 421.4 303 66.3
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 4.3e-105 386.3 288 66.3
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 9.6e-105 385.2 570 39.5
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 1.5e-94 351.3 270 61.5
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 1.4e-92 344.7 340 52.4
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 1.9e-92 344.4 275 61.1
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 3.0e-90 337.0 365 50.4
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 1.1e-87 328.6 352 50.9
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 6.1e-67 259.6 174 70.1
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 1.6e-59 235.0 203 58.6
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 1.8e-55 221.5 254 46.5
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 2.0e-49 201.4 365 35.3
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 7.3e-44 183.0 127 70.1
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 7.0e-39 166.4 198 44.4
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 1.1e-34 152.5 205 38.0
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 6.4e-32 143.3 118 63.6
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 3.2e-31 141.0 195 45.6
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 3.3e-28 131.0 95 67.4
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 3.3e-28 131.0 95 67.4
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 1.4e-26 125.6 77 75.3
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 4.9e-24 117.1 68 76.5
TPR.G25902 Trifolium pratense HOM05D000002 ORTHO05D000001 3.2e-23 114.4 72 66.7
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 1.2e-22 112.5 252 36.5
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 2.5e-20 104.8 82 59.8
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 8.9e-18 96.3 174 33.3
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 2.2e-16 91.7 96 44.8
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 3.9e-13 80.9 199 32.7
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 1.6e-11 75.5 45 77.8
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 3.4e-09 67.8 53 58.5


User provided reference genes

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