Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00102 Sapria himalayana HOM05D004885 ORTHO05D006124 6.1e-115 417.5 218 100.0
SHI00054 Sapria himalayana HOM05D004885 ORTHO05D006124 1.3e-56 223.8 151 80.8
Sabra05G0033700 Salix brachista HOM05D004885 ORTHO05D006124 2.3e-45 186.4 201 54.2
Potri.005G028900 Populus trichocarpa HOM05D004885 ORTHO05D006124 6.7e-45 184.9 201 53.7
AT3G06540 Arabidopsis thaliana HOM05D004885 ORTHO05D006124 1.5e-44 183.7 202 52.5
Potri.005G030000 Populus trichocarpa HOM05D004885 ORTHO05D006124 1.9e-44 183.3 201 53.7
QL04p012404 Quercus lobata HOM05D004885 ORTHO05D006124 3.3e-44 182.6 197 52.3
QL04p013021 Quercus lobata HOM05D004885 ORTHO05D006124 9.6e-44 181.0 197 51.8
Dinv40183 Davidia involucrata HOM05D004885 ORTHO05D006124 2.1e-43 179.9 198 53.0
Manes.01G155100 Manihot esculenta HOM05D004885 ORTHO05D006124 2.1e-43 179.9 203 53.7
GSVIVG01026648001 Vitis vinifera HOM05D004885 ORTHO05D006124 3.7e-43 179.1 204 52.5
CiPaw.06G030500 Carya illinoinensis HOM05D004885 ORTHO05D006124 4.8e-43 178.7 197 54.3
Thhalv10020408m.g Eutrema salsugineum HOM05D004885 ORTHO05D006124 1.4e-42 177.2 203 51.7
AL3G17570 Arabidopsis lyrata HOM05D004885 ORTHO05D006124 2.4e-42 176.4 202 51.0
CARHR081090 Cardamine hirsuta HOM05D004885 ORTHO05D006124 2.4e-42 176.4 200 50.5
Solyc02g082730.3 Solanum lycopersicum HOM05D004885 ORTHO05D006124 4.1e-42 175.6 198 51.0
PGSC0003DMG401001521 Solanum tuberosum HOM05D004885 ORTHO05D006124 4.1e-42 175.6 198 51.0
PGR102G0956 Punica granatum HOM05D004885 ORTHO05D006124 6.9e-42 174.9 196 52.0
Aa31LG5G17090 Aethionema arabicum HOM05D004885 ORTHO05D006124 9.0e-42 174.5 197 54.3
Atru.chr3.136 Acer truncatum HOM05D004885 ORTHO05D006124 1.2e-41 174.1 194 50.5
Actinidia22902 Actinidia chinensis HOM05D004885 ORTHO05D006124 1.2e-41 174.1 200 49.5
Sopen02g027490 Solanum pennellii HOM05D004885 ORTHO05D006124 1.5e-41 173.7 197 50.3
Hund03605 Selenicereus undatus HOM05D004885 ORTHO05D006124 2.6e-41 172.9 195 53.3
CAN.G1238.6 Capsicum annuum HOM05D004885 ORTHO05D006124 4.5e-41 172.2 198 50.0
Ciclev10025327m.g Citrus clementina HOM05D004885 ORTHO05D006124 5.9e-41 171.8 194 52.6
Psat0s2561g0200 Pisum sativum HOM05D004885 ORTHO05D006124 5.9e-41 171.8 205 49.8
CANSAT80G0225 Cannabis sativa HOM05D004885 ORTHO05D006124 1.0e-40 171.0 194 50.5
Sp3g05480 Schrenkiella parvula HOM05D004885 ORTHO05D006124 1.0e-40 171.0 196 51.5
Hma1.2p1_0300F.1_g118050 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 1.3e-40 170.6 199 50.3
THA.LOC104823506 Tarenaya hassleriana HOM05D004885 ORTHO05D006124 1.3e-40 170.6 194 52.6
Hma1.2p1_0085F.1_g044710 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 2.2e-40 169.9 213 48.8
Nitab4.5_0001936g0130 Nicotiana tabacum HOM05D004885 ORTHO05D006124 2.9e-40 169.5 197 50.8
Eucgr.I02226 Eucalyptus grandis HOM05D004885 ORTHO05D006124 3.8e-40 169.1 200 50.0
vmacro18463 Vaccinium macrocarpon HOM05D004885 ORTHO05D006124 3.8e-40 169.1 208 46.2
Carub.0003s0600 Capsella rubella HOM05D004885 ORTHO05D006124 5.0e-40 168.7 203 50.7
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 5.0e-40 168.7 195 51.3
ECA238G4274 Erigeron canadensis HOM05D004885 ORTHO05D006124 5.0e-40 168.7 193 51.3
Haze_00453 Corylus avellana HOM05D004885 ORTHO05D006124 6.5e-40 168.3 197 52.3
Dinv08168 Davidia involucrata HOM05D004885 ORTHO05D006124 6.5e-40 168.3 198 51.0
Lsat_1_v5_gn_2_73361 Lactuca sativa HOM05D004885 ORTHO05D006124 1.4e-39 167.2 199 48.7
Nn4g22671 Nelumbo nucifera HOM05D004885 ORTHO05D006124 1.9e-39 166.8 199 51.8
Thecc.01G005900 Theobroma cacao HOM05D004885 ORTHO05D006124 2.5e-39 166.4 197 49.2
Cc07_g11780 Coffea canephora HOM05D004885 ORTHO05D006124 7.2e-39 164.9 200 49.0
QL09p035161 Quercus lobata HOM05D004885 ORTHO05D006124 7.2e-39 164.9 197 49.2
TWI53G2056 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 7.2e-39 164.9 197 51.3
BolC5t34729H Brassica oleracea HOM05D004885 ORTHO05D006124 9.3e-39 164.5 195 49.2
HanXRQChr14g0442521 Helianthus annuus HOM05D004885 ORTHO05D006124 1.2e-38 164.1 199 46.7
MD02G1117700 Malus domestica HOM05D004885 ORTHO05D006124 1.2e-38 164.1 202 47.5
MD15G1232400 Malus domestica HOM05D004885 ORTHO05D006124 1.2e-38 164.1 202 48.0
TAR629G2658 Trochodendron aralioides HOM05D004885 ORTHO05D006124 1.2e-38 164.1 203 48.8
Nitab4.5_0006177g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 1.6e-38 163.7 197 50.3
Peaxi162Scf01051g00141 Petunia axillaris HOM05D004885 ORTHO05D006124 1.6e-38 163.7 200 49.0
CSS0014238 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 2.1e-38 163.3 198 47.0
Gohir.A07G170900 Gossypium hirsutum HOM05D004885 ORTHO05D006124 2.1e-38 163.3 193 46.6
Duzib147G0190 Durio zibethinus HOM05D004885 ORTHO05D006124 2.7e-38 162.9 198 48.5
Rhsim08G0027300 Rhododendron simsii HOM05D004885 ORTHO05D006124 2.7e-38 162.9 197 46.7
arahy.Tifrunner.gnm1.ann1.E2QT4D Arachis hypogaea HOM05D004885 ORTHO05D006124 4.6e-38 162.2 203 47.3
arahy.Tifrunner.gnm1.ann1.P2H8QY Arachis hypogaea HOM05D004885 ORTHO05D006124 4.6e-38 162.2 203 47.3
DCAR_006252 Daucus carota HOM05D004885 ORTHO05D006124 4.6e-38 162.2 194 49.0
Medtr5g024150 Medicago truncatula HOM05D004885 ORTHO05D006124 4.6e-38 162.2 206 46.6
Ca_24978_v3 Cicer arietinum L. HOM05D004885 ORTHO05D006124 6.1e-38 161.8 204 49.5
Glyma.11G085700 Glycine max HOM05D004885 ORTHO05D006124 6.1e-38 161.8 198 49.5
Glyma.01G159000 Glycine max HOM05D004885 ORTHO05D006124 1.0e-37 161.0 198 49.0
Lalb_Chr09g0324741 Lupinus albus HOM05D004885 ORTHO05D006124 1.0e-37 161.0 202 49.5
VMungo1215G0823 Vigna mungo HOM05D004885 ORTHO05D006124 1.3e-37 160.6 203 49.3
BraA05t22870Z Brassica rapa HOM05D004885 ORTHO05D006124 1.8e-37 160.2 195 49.2
Lj2g0026862 Lotus japonicus HOM05D004885 ORTHO05D006124 2.3e-37 159.8 198 48.5
CsaV3_3G000260 Cucumis sativus L. HOM05D004885 ORTHO05D006124 5.1e-37 158.7 193 49.7
Gorai.001G198800 Gossypium raimondii HOM05D004885 ORTHO05D006124 1.1e-36 157.5 194 44.8
MELO3C013721.2 Cucumis melo HOM05D004885 ORTHO05D006124 1.5e-36 157.1 193 49.2
TWI09G0982 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 1.5e-36 157.1 193 49.2
Migut.C00024 Erythranthe guttata HOM05D004885 ORTHO05D006124 2.5e-36 156.4 198 48.5
Gohir.D07G177700 Gossypium hirsutum HOM05D004885 ORTHO05D006124 3.3e-36 156.0 194 44.8
PSO386G0181 Papaver somniferum HOM05D004885 ORTHO05D006124 3.3e-36 156.0 207 45.9
FvH4_1g10450 Fragaria vesca HOM05D004885 ORTHO05D006124 4.3e-36 155.6 193 48.2
Prupe.7G181700 Prunus persica HOM05D004885 ORTHO05D006124 4.3e-36 155.6 203 48.8
SGA_v2.0_scaffold376G50298 Striga asiatica HOM05D004885 ORTHO05D006124 2.2e-35 153.3 202 47.0
Phvul.002G116400 Phaseolus vulgaris HOM05D004885 ORTHO05D006124 4.8e-35 152.1 198 48.0
PSO724G1376 Papaver somniferum HOM05D004885 ORTHO05D006124 8.2e-35 151.4 203 46.3
Aqoxy3G00208 Aquilegia oxysepala HOM05D004885 ORTHO05D006124 1.1e-34 151.0 205 45.9
RcHm_v2.0_Chr2g0097311 Rosa chinensis HOM05D004885 ORTHO05D006124 1.1e-34 151.0 193 46.1
Oeu012449.1 Olea europaea HOM05D004885 ORTHO05D006124 1.8e-34 150.2 200 44.0
Ah.14g085190 Amaranthus hybridus HOM05D004885 ORTHO05D006124 2.4e-34 149.8 197 45.7
Sed0002359 Sechium edule HOM05D004885 ORTHO05D006124 9.1e-34 147.9 191 46.6
FAN28G2162 Fragaria x ananassa HOM05D004885 ORTHO05D006124 1.2e-33 147.5 193 46.1
CDE08G1303 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 2.0e-33 146.7 199 47.2
unitig_37.g12359 Utricularia gibba HOM05D004885 ORTHO05D006124 2.6e-33 146.4 195 45.6
MBI15_g00077_MAGBIO Magnolia biondii HOM05D004885 ORTHO05D006124 7.7e-33 144.8 195 46.7
MD10G1065000 Malus domestica HOM05D004885 ORTHO05D006124 7.7e-33 144.8 193 47.2
Zm00001eb333020 Zea mays HOM05D004885 ORTHO05D006124 7.7e-33 144.8 193 45.1
HPP92_017799 Vanilla planifolia HOM05D004885 ORTHO05D006124 1.3e-32 144.1 211 45.0
EL10Ac8g19196 Beta vulgaris HOM05D004885 ORTHO05D006124 1.7e-32 143.7 198 44.9
FAN26G3465 Fragaria x ananassa HOM05D004885 ORTHO05D006124 2.2e-32 143.3 192 44.8
Zm00001eb128670 Zea mays HOM05D004885 ORTHO05D006124 3.8e-32 142.5 193 44.0
Sc16g0001670 Simmondsia chinensis HOM05D004885 ORTHO05D006124 6.7e-29 131.7 191 47.1
Os01g0269100 Oryza sativa ssp. japonica HOM05D004885 ORTHO05D006124 7.4e-28 128.3 193 41.5
MD17G1057100 Malus domestica HOM05D004885 ORTHO05D006124 1.7e-27 127.1 195 44.1
ATR0605G212 Amborella trichopoda HOM05D004885 ORTHO05D006124 1.5e-25 120.6 196 41.3
CDE06G1258 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 4.5e-25 119.0 208 41.8
SEGI_12272 Sequoiadendron giganteum HOM05D004885 ORTHO05D006124 4.5e-25 119.0 205 38.0
Cc11_g03220 Coffea canephora HOM05D004885 ORTHO05D006124 6.5e-24 115.2 214 36.9
CSS0037388 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 8.5e-24 114.8 169 44.4
Pp3c12_25630 Physcomitrium patens HOM05D004885 ORTHO05D006124 3.0e-21 106.3 193 36.8
SMO137G0095 Selaginella moellendorffii HOM05D004885 ORTHO05D006124 1.3e-19 100.9 191 36.1
AagrBONN_evm.TU.Sc2ySwM_117.1017 Anthoceros agrestis HOM05D004885 ORTHO05D006124 7.2e-15 85.1 191 33.0
Lj4C235G2 Lonicera japonica HOM05D004885 ORTHO05D006124 9.4e-15 84.7 110 45.5
TPR.G29310 Trifolium pratense HOM05D004885 ORTHO05D006124 1.2e-14 84.3 144 40.3
AUR62033951 Chenopodium quinoa HOM05D004885 ORTHO05D006124 3.3e-12 76.3 113 41.6
Mapoly0007s0130 Marchantia polymorpha HOM05D004885 ORTHO05D006124 6.3e-11 72.0 86 48.8
Nitab4.5_0024681g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 1.8e-10 70.5 87 48.3
Atru.chr4.1889 Acer truncatum HOM05D004885 ORTHO05D006124 3.8e-08 62.8 74 47.3
Atru.chr4.1890 Acer truncatum HOM05D004885 ORTHO05D006124 5.0e-08 62.4 63 54.0
MCO16G005 Micromonas commoda HOM05D004885 ORTHO05D006124 6.5e-08 62.0 206 29.1
TPR.G5176 Trifolium pratense HOM05D004885 ORTHO05D006124 1.5e-07 60.8 56 57.1
BcaC05g29192 Brassica carinata HOM05D004885 ORTHO05D032332 3.2e-07 59.7 161 33.5
CBR_g49718 Chara braunii HOM05D004885 ORTHO05D006124 7.2e-07 58.5 81 42.0
Migut.N03012 Erythranthe guttata HOM05D001561 ORTHO05D001715 2.7e-06 56.6 61 44.3
Migut.O00492 Erythranthe guttata HOM05D001561 ORTHO05D001715 2.7e-06 56.6 61 44.3
Nitab4.5_0005996g0010 Nicotiana tabacum HOM05D001561 ORTHO05D001715 2.7e-06 56.6 61 44.3
Rhsim10G0172500 Rhododendron simsii HOM05D001561 ORTHO05D001715 2.7e-06 56.6 60 45.0
Zm00001eb020700 Zea mays HOM05D001561 ORTHO05D001715 2.7e-06 56.6 60 45.0
Lj4g0027710 Lotus japonicus HOM05D001561 ORTHO05D001715 3.6e-06 56.2 61 42.6
Phvul.002G248100 Phaseolus vulgaris HOM05D001561 ORTHO05D001715 3.6e-06 56.2 61 42.6
Potri.007G115300 Populus trichocarpa HOM05D001561 ORTHO05D001715 3.6e-06 56.2 60 45.0
PGR142G4374 Punica granatum HOM05D001561 ORTHO05D001715 3.6e-06 56.2 60 43.3
Sabra07G0094100 Salix brachista HOM05D001561 ORTHO05D001715 3.6e-06 56.2 62 43.5
Hund22674 Selenicereus undatus HOM05D001561 ORTHO05D001715 3.6e-06 56.2 61 42.6
Cre09.g388467 Chlamydomonas reinhardtii HOM05D001561 ORTHO05D001715 4.7e-06 55.8 62 45.2
DCAR_021915 Daucus carota HOM05D001561 ORTHO05D001715 4.7e-06 55.8 62 43.5
Migut.N01095 Erythranthe guttata HOM05D001561 ORTHO05D001715 4.7e-06 55.8 60 43.3
Lalb_Chr09g0326001 Lupinus albus HOM05D001561 ORTHO05D001715 4.7e-06 55.8 60 43.3
arahy.Tifrunner.gnm1.ann1.P33QQK Arachis hypogaea HOM05D001561 ORTHO05D001715 6.1e-06 55.5 67 40.3
arahy.Tifrunner.gnm1.ann1.XE4EDZ Arachis hypogaea HOM05D001561 ORTHO05D001715 6.1e-06 55.5 67 40.3
CSS0008470 Camellia sinensis var. sinensis HOM05D001561 ORTHO05D001715 6.1e-06 55.5 60 41.7
CSS0034483 Camellia sinensis var. sinensis HOM05D001561 ORTHO05D001715 6.1e-06 55.5 60 41.7
Cfa008537 Carpinus fangiana HOM05D001561 ORTHO05D001715 6.1e-06 55.5 60 45.0
Medtr8g088620 Medicago truncatula HOM05D001561 ORTHO05D001715 6.1e-06 55.5 61 44.3
TPR.G6750 Trifolium pratense HOM05D001561 ORTHO05D001715 6.1e-06 55.5 61 42.6
EL10Ac9g22074 Beta vulgaris HOM05D001561 ORTHO05D001715 8.0e-06 55.1 62 41.9
Ca_17837_v3 Cicer arietinum L. HOM05D001561 ORTHO05D001715 8.0e-06 55.1 61 42.6
Haze_10524 Corylus avellana HOM05D001561 ORTHO05D001715 8.0e-06 55.1 60 43.3
Migut.N03007 Erythranthe guttata HOM05D001561 ORTHO05D001715 8.0e-06 55.1 60 43.3
Glyma.05G167800 Glycine max HOM05D001561 ORTHO05D001715 8.0e-06 55.1 61 42.6
Glyma.08G126200 Glycine max HOM05D001561 ORTHO05D001715 8.0e-06 55.1 61 42.6
Lsat_1_v5_gn_2_70621 Lactuca sativa HOM05D001561 ORTHO05D001715 8.0e-06 55.1 88 35.2
Lalb_Chr07g0185861 Lupinus albus HOM05D001561 ORTHO05D001715 8.0e-06 55.1 61 42.6
Lalb_Chr13g0295601 Lupinus albus HOM05D001561 ORTHO05D001715 8.0e-06 55.1 61 42.6
Manes.07G038400 Manihot esculenta HOM05D001561 ORTHO05D001715 8.0e-06 55.1 63 41.3
PRCOL_00001884 Prasinoderma coloniale HOM05D004885 ORTHO05D006124 8.0e-06 55.1 185 30.3


User provided reference genes

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