Gene: AT3G06540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G06540
  • Transcript Identifier AT3G06540.1
  • Gene Type Coding gene
  • Location Chr3 : 2035201-2037662 : negative

Gene Family Information

  • ID HOM05D004885
  • #Genes/#Species 151/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G06540.1
  • symbol REP
  • Alias AthREP
  • uniprot Q8LLD4

Descriptions

  • Description Rab escort protein
  • Computational description Rab escort protein (REP); FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: intracellular protein transport, regulation of GTPase activity, protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), Rab protein geranylgeranyltransferase component A, eukaryota (InterPro:IPR016664), Yeast Mrs6p protein (InterPro:IPR000632), GDP dissociation inhibitor (InterPro:IPR018203); BEST Arabidopsis thaliana protein match is: guanosine nucleotide diphosphate dissociation inhibitor 1 (TAIR:AT2G44100.1); Has 1226 Blast hits to 1117 proteins in 247 species: Archae - 0; Bacteria - 2; Metazoa - 578; Fungi - 292; Plants - 178; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018344
IEA
GOA Databaseprotein geranylgeranylation
GO:0018344
IBA
Gene Ontologyprotein geranylgeranylation1
GO:0018344
IEA
InterProprotein geranylgeranylation
GO:0006886
IEA
Gene Ontologyintracellular protein transport
GO:0006886
IEA
InterProintracellular protein transport
GO:0007264
IEA
Gene Ontologysmall GTPase mediated signal transduction
GO:0007264
IEA
InterProsmall GTPase mediated signal transduction
GO:0050790
IEA
GOA Databaseregulation of catalytic activity
GO:0016192
IBA
Gene Ontologyvesicle-mediated transport1
GO:2000541
IDA
Gene Ontologypositive regulation of protein geranylgeranylation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005092
IEA
Gene OntologyGDP-dissociation inhibitor activity
GO:0005092
IEA
InterProGDP-dissociation inhibitor activity
GO:0005096
IEA
GOA DatabaseGTPase activator activity
GO:0031267
IDA
Gene Ontologysmall GTPase binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
IBA
Gene Ontologycytosol1
GO:0005968
IEA
GOA DatabaseRab-protein geranylgeranyltransferase complex
GO:0005968
IDA
IBA
Gene OntologyRab-protein geranylgeranyltransferase complex1 3
GO:0005968
IEA
InterProRab-protein geranylgeranyltransferase complex
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
ISM, IBA
Gene Ontologycytoplasm1 2
GO:0005634
IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018203 GDP dissociation inhibitor
IPR036188 FAD/NAD(P)-binding domain superfamily
IPR017230 Rab geranylgeranyltransferase complex component A
IPR001738 Rab protein geranylgeranyltransferase component A
Mapman id Description
22.3.4.4.1.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.accessory subunit