Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 0.0e+00 2329.3 1205 100.0
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 9.1e-152 542.3 556 54.1
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 6.1e-140 503.1 552 50.7
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 8.8e-139 499.2 573 50.6
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 3.1e-136 490.7 509 54.6
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 4.5e-135 486.9 575 49.9
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 9.5e-133 479.2 576 49.5
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.0e-131 475.7 587 48.2
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 8.9e-131 472.6 452 56.0
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 1.7e-129 468.4 555 49.2
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 2.9e-129 467.6 440 56.1
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 8.3e-129 466.1 565 49.7
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 2.0e-127 461.5 539 49.4
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 4.6e-127 460.3 533 49.3
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 1.0e-126 459.1 532 50.2
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 1.3e-126 458.8 496 52.2
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 1.3e-126 458.8 551 48.8
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 5.0e-126 456.8 554 48.9
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 5.0e-126 456.8 478 53.1
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 1.5e-125 455.3 478 52.3
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 4.3e-125 453.8 558 47.7
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 5.6e-125 453.4 565 47.4
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 9.5e-125 452.6 476 52.5
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 2.8e-124 451.1 567 48.5
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 4.7e-124 450.3 532 48.5
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 6.2e-124 449.9 476 51.1
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 1.4e-123 448.7 491 51.1
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 1.4e-123 448.7 490 50.8
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 1.5e-122 445.3 455 54.7
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 2.0e-122 444.9 548 49.5
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 2.0e-122 444.9 465 51.6
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 5.8e-122 443.4 407 55.3
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 5.8e-122 443.4 490 50.8
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 5.8e-122 443.4 478 49.8
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 2.9e-121 441.0 578 46.9
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 4.9e-121 440.3 480 51.0
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 1.1e-120 439.1 569 46.2
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 2.4e-120 438.0 472 51.5
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 2.7e-119 434.5 571 45.7
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 6.0e-119 433.3 465 49.7
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.0e-118 432.6 549 46.8
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 1.1e-117 429.1 532 47.4
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 1.1e-117 429.1 496 47.4
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 1.1e-117 429.1 582 45.9
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 1.5e-117 428.7 463 51.0
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 1.6e-116 425.2 572 46.2
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 2.1e-116 424.9 457 50.1
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 3.6e-116 424.1 486 49.4
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 3.6e-116 424.1 524 45.6
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.7e-116 423.7 571 45.9
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 8.1e-116 422.9 575 44.7
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 8.1e-116 422.9 467 50.5
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 1.1e-115 422.5 478 49.8
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 1.1e-115 422.5 543 44.8
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 3.1e-115 421.0 478 50.4
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 3.1e-115 421.0 566 45.2
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 3.1e-115 421.0 490 47.8
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.0e-115 420.6 572 46.0
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 6.8e-115 419.9 467 50.3
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 1.2e-114 419.1 493 47.3
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 2.6e-114 417.9 591 43.7
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.6e-114 417.9 465 50.8
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 5.8e-114 416.8 572 45.5
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 2.2e-113 414.8 466 50.9
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 3.7e-113 414.1 478 48.5
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.1e-112 410.6 572 44.9
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 4.1e-112 410.6 558 44.1
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 9.2e-112 409.5 595 43.0
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 1.6e-111 408.7 473 48.0
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 3.5e-111 407.5 553 44.5
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 1.7e-110 405.2 427 50.4
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 1.1e-109 402.5 456 48.5
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 2.5e-109 401.4 554 44.4
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 2.5e-109 401.4 504 46.6
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 2.5e-109 401.4 487 46.6
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 3.3e-109 401.0 496 46.0
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 6.2e-108 396.7 441 49.4
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 6.2e-108 396.7 441 49.4
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 2.3e-107 394.8 481 47.8
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 3.1e-107 394.4 441 49.2
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 4.0e-107 394.0 518 44.2
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 4.0e-107 394.0 426 51.2
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 3.4e-106 391.0 449 48.6
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 4.4e-106 390.6 594 41.9
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 1.3e-105 389.0 501 45.1
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 2.4e-104 384.8 540 43.5
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 1.7e-102 378.6 492 45.9
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 4.3e-101 374.0 440 47.0
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 3.6e-100 370.9 492 45.3
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 6.2e-100 370.2 580 40.9
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 8.1e-100 369.8 568 42.6
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.4e-99 369.0 464 47.2
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 8.9e-99 366.3 427 47.5
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 4.2e-96 357.5 440 45.9
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 1.3e-94 352.4 465 43.7
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 5.8e-90 337.0 412 47.3
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 2.2e-89 335.1 506 41.9
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 5.1e-86 323.9 529 40.8
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 1.6e-84 318.9 426 44.4
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 2.1e-84 318.5 433 44.8
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 3.1e-83 314.7 499 38.7
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 1.7e-81 308.9 307 54.1
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 4.9e-81 307.4 423 44.7
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 2.4e-80 305.1 349 49.6
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 1.6e-79 302.4 461 40.6
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 2.4e-67 261.9 418 37.1
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 5.5e-64 250.8 407 37.1
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 7.2e-64 250.4 517 33.1
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 1.4e-59 236.1 275 46.5
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 3.0e-54 218.4 257 49.4
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 5.7e-53 214.2 372 34.7
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.8e-52 211.8 363 34.7
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 2.4e-51 208.8 339 40.4
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 6.9e-51 207.2 344 37.2
SEGI_13365 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.6e-47 196.1 416 35.3
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 1.2e-42 179.9 177 55.4
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 8.0e-39 167.2 240 42.1
Hma1.2p1_0071F.1_g037910 Hydrangea macrophylla HOM05D004707 ORTHO05D005837 1.8e-27 129.4 100 64.0
MBI09_g26550_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 1.7e-25 122.9 106 59.4
Cpa.g.sc11.48 Carica papaya HOM05D004707 ORTHO05D005837 8.6e-25 120.6 96 61.5
Rhsim05G0008500 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.1e-24 120.2 244 32.4
Rhsim05G0021600 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.1e-24 120.2 246 32.1
SEGI_23190 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 3.3e-24 118.6 105 52.4
SMO361G0110 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 2.3e-22 112.5 290 27.6
HanXRQChr11g0349701 Helianthus annuus HOM05D004707 ORTHO05D005837 4.0e-22 111.7 86 60.5
HanXRQChr17g0534491 Helianthus annuus HOM05D004707 ORTHO05D005837 4.0e-22 111.7 86 60.5
HanXRQChr09g0268301 Helianthus annuus HOM05D004707 ORTHO05D005837 1.5e-21 109.8 84 60.7
Mapoly0003s0092 Marchantia polymorpha HOM05D004707 ORTHO05D005837 1.6e-18 99.8 253 26.9
SMO361G0690 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.7e-17 96.3 280 28.2
TAR626G0135 Trochodendron aralioides HOM05D004707 ORTHO05D005837 2.3e-17 95.9 69 73.9
Rhsim07G0181500 Rhododendron simsii HOM05D004707 ORTHO05D005837 6.6e-17 94.4 175 33.7
Pp3c3_12760 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.9e-16 92.8 343 24.2
Migut.B01027 Erythranthe guttata HOM05D004707 ORTHO05D005837 2.5e-16 92.4 161 34.8
Migut.B01028 Erythranthe guttata HOM05D004707 ORTHO05D005837 4.3e-16 91.7 114 50.0
Pp3c9_20120 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.8e-14 86.3 179 29.6
AagrBONN_evm.TU.Sc2ySwM_368.2343 Anthoceros agrestis HOM05D004707 ORTHO05D005837 8.9e-14 84.0 258 26.7
Pp3c13_20730 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.5e-13 83.2 234 25.2
Lsat_1_v5_gn_4_48081 Lactuca sativa HOM05D004707 ORTHO05D005837 5.8e-13 81.3 143 32.2
Lsat_1_v5_gn_4_48041 Lactuca sativa HOM05D004707 ORTHO05D005837 7.8e-10 70.9 163 29.4
SGA_v2.0_scaffold95G28745 Striga asiatica HOM05D004707 ORTHO05D400656 2.5e-08 65.9 38 89.5
Cre01.g055432 Chlamydomonas reinhardtii HOM05D002409 ORTHO05D002557 8.0e-07 60.8 216 23.1
Atru.chr12.711 Acer truncatum HOM05D004707 ORTHO05D005837 1.8e-06 59.7 205 26.8
PRCOL_00003228 Prasinoderma coloniale HOM05D002409 ORTHO05D002557 5.2e-06 58.2 105 32.4
Aqoxy5G00594 Aquilegia oxysepala HOM05D001987 ORTHO05D004018 8.9e-06 57.4 39 66.7
Cre01.g035600 Chlamydomonas reinhardtii HOM05D004707 ORTHO05D005837 8.9e-06 57.4 112 35.7
Cre01.g035750 Chlamydomonas reinhardtii HOM05D004707 ORTHO05D005837 8.9e-06 57.4 109 34.9


User provided reference genes

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