Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28798 Striga asiatica HOM05D004276 ORTHO05D005126 9.2e-83 310.1 146 100.0
CsaV3_3G040290 Cucumis sativus L. HOM05D004276 ORTHO05D005126 1.2e-61 240.0 141 83.0
Actinidia20176 Actinidia chinensis HOM05D004276 ORTHO05D005126 1.5e-61 239.6 141 82.3
MELO3C009766.2 Cucumis melo HOM05D004276 ORTHO05D005126 1.5e-61 239.6 141 82.3
Ciclev10022345m.g Citrus clementina HOM05D004276 ORTHO05D005126 5.8e-61 237.7 141 81.6
Nitab4.5_0000305g0280 Nicotiana tabacum HOM05D004276 ORTHO05D005126 7.6e-61 237.3 141 81.6
Solyc03g121130.3 Solanum lycopersicum HOM05D004276 ORTHO05D005126 7.6e-61 237.3 141 81.6
Sopen03g039960 Solanum pennellii HOM05D004276 ORTHO05D005126 7.6e-61 237.3 141 81.6
CSS0045220 Camellia sinensis var. sinensis HOM05D004276 ORTHO05D005126 9.9e-61 236.9 141 80.9
PGSC0003DMG402002606 Solanum tuberosum HOM05D004276 ORTHO05D005126 9.9e-61 236.9 141 80.9
unitig_736.g22824 Utricularia gibba HOM05D004276 ORTHO05D005126 9.9e-61 236.9 141 80.9
HPP92_002823 Vanilla planifolia HOM05D004276 ORTHO05D005126 9.9e-61 236.9 141 80.9
HPP92_002881 Vanilla planifolia HOM05D004276 ORTHO05D005126 9.9e-61 236.9 141 80.9
Atru.chr5.606 Acer truncatum HOM05D004276 ORTHO05D005126 1.3e-60 236.5 141 80.9
Rhsim01G0168500 Rhododendron simsii HOM05D004276 ORTHO05D005126 1.3e-60 236.5 141 80.9
Rhsim11G0144600 Rhododendron simsii HOM05D004276 ORTHO05D005126 1.3e-60 236.5 141 80.9
Cc02_g38790 Coffea canephora HOM05D004276 ORTHO05D005126 1.7e-60 236.1 141 80.1
Lj9C594T5 Lonicera japonica HOM05D004276 ORTHO05D005126 1.7e-60 236.1 141 80.1
MBI06_g29321_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 1.7e-60 236.1 141 80.1
SalBow3G3563 Salvia bowleyana HOM05D004276 ORTHO05D005126 1.7e-60 236.1 148 77.0
Aqoxy7G00185 Aquilegia oxysepala HOM05D004276 ORTHO05D005126 2.2e-60 235.7 141 80.9
MSTRG.17308 Avicennia marina HOM05D004276 ORTHO05D005126 2.2e-60 235.7 141 80.9
DCAR_017055 Daucus carota HOM05D004276 ORTHO05D005126 2.2e-60 235.7 141 80.1
Nn5g30298 Nelumbo nucifera HOM05D004276 ORTHO05D005126 2.2e-60 235.7 141 80.1
Sed0018576 Sechium edule HOM05D004276 ORTHO05D005126 2.2e-60 235.7 141 81.6
Thecc.01G349900 Theobroma cacao HOM05D004276 ORTHO05D005126 2.2e-60 235.7 141 80.9
GSVIVG01026915001 Vitis vinifera HOM05D004276 ORTHO05D005126 2.2e-60 235.7 141 81.6
GSVIVG01027024001 Vitis vinifera HOM05D004276 ORTHO05D005126 2.2e-60 235.7 141 81.6
EL10Ac1g00335 Beta vulgaris HOM05D004276 ORTHO05D005126 2.9e-60 235.3 141 80.1
Prupe.2G181300 Prunus persica HOM05D004276 ORTHO05D005126 2.9e-60 235.3 141 80.9
TWI59G1141 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 2.9e-60 235.3 141 78.7
Migut.B01814 Erythranthe guttata HOM05D004276 ORTHO05D005126 3.8e-60 235.0 141 80.1
Migut.N01579 Erythranthe guttata HOM05D004276 ORTHO05D005126 3.8e-60 235.0 141 80.1
PSO302G0143 Papaver somniferum HOM05D004276 ORTHO05D005126 3.8e-60 235.0 141 80.9
PSO384G3706 Papaver somniferum HOM05D004276 ORTHO05D005126 3.8e-60 235.0 141 80.9
Sc23g0002430 Simmondsia chinensis HOM05D004276 ORTHO05D005126 3.8e-60 235.0 141 79.4
TWI14G0490 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 3.8e-60 235.0 141 80.1
ECA234G2670 Erigeron canadensis HOM05D004276 ORTHO05D005126 4.9e-60 234.6 141 79.4
Eucgr.E00082 Eucalyptus grandis HOM05D004276 ORTHO05D005126 4.9e-60 234.6 141 80.1
HanXRQChr17g0562231 Helianthus annuus HOM05D004276 ORTHO05D005126 4.9e-60 234.6 141 79.4
Os06g0158600 Oryza sativa ssp. japonica HOM05D004276 ORTHO05D005126 4.9e-60 234.6 141 80.9
PSO135G0697 Papaver somniferum HOM05D004276 ORTHO05D005126 4.9e-60 234.6 141 80.1
PSO210G0614 Papaver somniferum HOM05D004276 ORTHO05D005126 4.9e-60 234.6 141 80.1
RcHm_v2.0_Chr1g0358391 Rosa chinensis HOM05D004276 ORTHO05D005126 4.9e-60 234.6 141 81.6
Zm00001eb376300 Zea mays HOM05D004276 ORTHO05D005126 4.9e-60 234.6 141 80.9
Zm00001eb376330 Zea mays HOM05D004276 ORTHO05D005126 4.9e-60 234.6 141 80.9
Duzib133G1515 Durio zibethinus HOM05D004276 ORTHO05D005126 6.4e-60 234.2 141 80.1
Duzib138G1911 Durio zibethinus HOM05D004276 ORTHO05D005126 8.4e-60 233.8 141 80.1
FvH4_7g15670 Fragaria vesca HOM05D004276 ORTHO05D005126 8.4e-60 233.8 141 80.9
Lj1g0009566 Lotus japonicus HOM05D004276 ORTHO05D005126 1.1e-59 233.4 141 80.1
Lj3g0009308 Lotus japonicus HOM05D004276 ORTHO05D005126 1.1e-59 233.4 141 80.1
MD01G1073500 Malus domestica HOM05D004276 ORTHO05D005126 1.1e-59 233.4 141 80.9
SEGI_17768 Sequoiadendron giganteum HOM05D004276 ORTHO05D005126 1.1e-59 233.4 141 79.4
ClCG10G016120 Citrullus lanatus HOM05D004276 ORTHO05D005126 1.4e-59 233.0 142 79.6
FAN06G0043 Fragaria x ananassa HOM05D004276 ORTHO05D005126 1.4e-59 233.0 141 80.1
HPP92_002892 Vanilla planifolia HOM05D004276 ORTHO05D005126 1.4e-59 233.0 141 80.1
Ah.05g180030 Amaranthus hybridus HOM05D004276 ORTHO05D005126 2.4e-59 232.3 134 82.8
Gohir.A11G093300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 2.4e-59 232.3 141 79.4
Gohir.D11G098300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 2.4e-59 232.3 141 79.4
Sabra14G0067200 Salix brachista HOM05D004276 ORTHO05D005126 2.4e-59 232.3 141 79.4
Gorai.007G104500 Gossypium raimondii HOM05D004276 ORTHO05D005126 3.2e-59 231.9 141 78.7
THA.LOC104802050 Tarenaya hassleriana HOM05D004276 ORTHO05D005126 3.2e-59 231.9 141 78.7
Zm00001eb376230 Zea mays HOM05D004276 ORTHO05D005126 3.2e-59 231.9 141 80.1
QL04p058903 Quercus lobata HOM05D004276 ORTHO05D005126 4.2e-59 231.5 141 79.4
Lalb_Chr04g0261801 Lupinus albus HOM05D004276 ORTHO05D005126 5.4e-59 231.1 141 78.7
Phvul.005G117100 Phaseolus vulgaris HOM05D004276 ORTHO05D005126 5.4e-59 231.1 141 78.7
PGR031G2222 Punica granatum HOM05D004276 ORTHO05D005126 5.4e-59 231.1 141 78.7
AL1G39200 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 7.1e-59 230.7 141 78.0
Manes.11G086700 Manihot esculenta HOM05D004276 ORTHO05D005126 7.1e-59 230.7 141 78.0
CANSAT78G1628 Cannabis sativa HOM05D004276 ORTHO05D005126 9.3e-59 230.3 141 77.3
CiPaw.01G069700 Carya illinoinensis HOM05D004276 ORTHO05D005126 9.3e-59 230.3 141 78.7
Glyma.12G191100 Glycine max HOM05D004276 ORTHO05D005126 9.3e-59 230.3 141 79.4
Glyma.13G310600 Glycine max HOM05D004276 ORTHO05D005126 9.3e-59 230.3 141 79.4
TAR374G1118 Trochodendron aralioides HOM05D004276 ORTHO05D005126 9.3e-59 230.3 141 78.7
TAR375G0154 Trochodendron aralioides HOM05D004276 ORTHO05D005126 9.3e-59 230.3 141 78.7
Mapoly0007s0029 Marchantia polymorpha HOM05D004276 ORTHO05D005126 1.2e-58 229.9 141 77.3
AUR62022636 Chenopodium quinoa HOM05D004276 ORTHO05D005126 1.6e-58 229.6 141 78.0
Potri.002G166200 Populus trichocarpa HOM05D004276 ORTHO05D005126 2.1e-58 229.2 141 76.6
Potri.014G092600 Populus trichocarpa HOM05D004276 ORTHO05D005126 2.1e-58 229.2 141 77.3
Peaxi162Scf01254g00021 Petunia axillaris HOM05D004276 ORTHO05D005126 2.7e-58 228.8 138 80.4
Pp3c7_15560 Physcomitrium patens HOM05D004276 ORTHO05D005126 4.6e-58 228.0 143 76.9
Psat3g005280 Pisum sativum HOM05D004276 ORTHO05D005126 4.6e-58 228.0 141 79.4
Cfa003820 Carpinus fangiana HOM05D004276 ORTHO05D005126 6.0e-58 227.6 138 79.7
FAN01G1870 Fragaria x ananassa HOM05D004276 ORTHO05D005126 6.0e-58 227.6 138 81.2
FAN10G0892 Fragaria x ananassa HOM05D004276 ORTHO05D005126 6.0e-58 227.6 138 81.2
Cpa.g.sc184.11 Carica papaya HOM05D004276 ORTHO05D005126 1.0e-57 226.9 138 79.0
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 1.3e-57 226.5 143 76.2
Ca_25855_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 1.8e-57 226.1 138 79.7
Thhalv10001643m.g Eutrema salsugineum HOM05D004276 ORTHO05D005126 1.8e-57 226.1 141 75.9
CARHR025440 Cardamine hirsuta HOM05D004276 ORTHO05D005126 2.3e-57 225.7 141 75.9
CBR_g20329 Chara braunii HOM05D004276 ORTHO05D005126 2.3e-57 225.7 141 77.3
Haze_15633 Corylus avellana HOM05D004276 ORTHO05D005126 2.3e-57 225.7 161 69.6
VMungo1080G0287 Vigna mungo HOM05D004276 ORTHO05D005126 2.3e-57 225.7 138 79.0
Ca_09481_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 3.9e-57 224.9 138 79.0
Medtr7g116720 Medicago truncatula HOM05D004276 ORTHO05D005126 3.9e-57 224.9 141 77.3
TPR.G4704 Trifolium pratense HOM05D004276 ORTHO05D005126 3.9e-57 224.9 141 78.0
Aa31LG1G27620 Aethionema arabicum HOM05D004276 ORTHO05D005126 5.1e-57 224.6 138 78.3
Carub.0004s2893 Capsella rubella HOM05D004276 ORTHO05D005126 5.1e-57 224.6 143 74.8
Medtr6g086290 Medicago truncatula HOM05D004276 ORTHO05D005126 1.1e-56 223.4 141 76.6
AUR62004429 Chenopodium quinoa HOM05D004276 ORTHO05D005126 1.5e-56 223.0 138 77.5
AagrBONN_evm.TU.Sc2ySwM_368.2613 Anthoceros agrestis HOM05D004276 ORTHO05D005126 4.3e-56 221.5 133 78.2
AT2G46230 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 4.3e-56 221.5 141 74.5
Oeu004920.1 Olea europaea HOM05D004276 ORTHO05D005126 7.4e-56 220.7 144 76.4
FAN10G4166 Fragaria x ananassa HOM05D004276 ORTHO05D005126 1.6e-55 219.5 148 75.7
arahy.Tifrunner.gnm1.ann1.BP50A3 Arachis hypogaea HOM05D004276 ORTHO05D005126 2.1e-55 219.2 141 75.2
arahy.Tifrunner.gnm1.ann1.K2BJ17 Arachis hypogaea HOM05D004276 ORTHO05D005126 3.7e-55 218.4 141 75.2
SMO117G0002 Selaginella moellendorffii HOM05D004276 ORTHO05D005126 4.8e-55 218.0 138 75.4
SalBow1G3478 Salvia bowleyana HOM05D004276 ORTHO05D005126 1.4e-54 216.5 138 76.1
Sp4g28280 Schrenkiella parvula HOM05D004276 ORTHO05D005126 2.4e-54 215.7 143 72.0
AL4G45500 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 4.0e-54 214.9 141 73.8
BcaC02g12509 Brassica carinata HOM05D004276 ORTHO05D005126 2.0e-53 212.6 141 72.3
FAN06G3034 Fragaria x ananassa HOM05D004276 ORTHO05D005126 4.5e-53 211.5 140 74.3
arahy.Tifrunner.gnm1.ann1.4FI6MM Arachis hypogaea HOM05D004276 ORTHO05D005126 5.8e-53 211.1 138 73.9
arahy.Tifrunner.gnm1.ann1.X3APAR Arachis hypogaea HOM05D004276 ORTHO05D005126 5.8e-53 211.1 138 73.9
MBI07_g03903_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 7.6e-53 210.7 133 75.2
BcaC02g12702 Brassica carinata HOM05D004276 ORTHO05D005126 1.3e-52 209.9 141 71.6
BcaC02g07027 Brassica carinata HOM05D004276 ORTHO05D005126 1.1e-51 206.8 137 72.3
A04p34320 Brassica napus HOM05D004276 ORTHO05D005126 1.1e-51 206.8 137 72.3
A05p01570 Brassica napus HOM05D004276 ORTHO05D005126 1.1e-51 206.8 137 72.3
C04p01790 Brassica napus HOM05D004276 ORTHO05D005126 1.1e-51 206.8 137 72.3
C04p72140 Brassica napus HOM05D004276 ORTHO05D005126 1.1e-51 206.8 137 72.3
BraA04t18893Z Brassica rapa HOM05D004276 ORTHO05D005126 1.1e-51 206.8 137 72.3
BraA05t19152Z Brassica rapa HOM05D004276 ORTHO05D005126 1.1e-51 206.8 137 72.3
Cre16.g679450 Chlamydomonas reinhardtii HOM05D004276 ORTHO05D005126 1.1e-51 206.8 138 67.4
MCO11G412 Micromonas commoda HOM05D004276 ORTHO05D005126 4.2e-51 204.9 140 67.9
QL06p021685 Quercus lobata HOM05D004276 ORTHO05D005126 4.2e-51 204.9 179 60.9
BcaB06g29435 Brassica carinata HOM05D004276 ORTHO05D005126 7.1e-51 204.1 137 71.5
Nitab4.5_0004748g0010 Nicotiana tabacum HOM05D004276 ORTHO05D005126 1.0e-44 183.7 110 80.9
Glyma.03G254200 Glycine max HOM05D004276 ORTHO05D005126 1.1e-43 180.3 109 79.8
Zm00001eb376200 Zea mays HOM05D004276 ORTHO05D005126 1.9e-43 179.5 141 66.7
Zm00001eb376270 Zea mays HOM05D004276 ORTHO05D005126 1.9e-43 179.5 141 66.7
Lsat_1_v5_gn_4_34121 Lactuca sativa HOM05D004276 ORTHO05D005126 4.2e-43 178.3 113 77.0
CAN.G1143.25 Capsicum annuum HOM05D004276 ORTHO05D005126 1.2e-42 176.8 113 77.0
Sabra02G0145400 Salix brachista HOM05D004276 ORTHO05D005126 1.2e-42 176.8 161 57.1
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 2.1e-42 176.0 112 77.7
CDE05G0403 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 7.9e-42 174.1 112 75.9
Cc00_g30190 Coffea canephora HOM05D004276 ORTHO05D005126 1.9e-40 169.5 118 72.9
Haze_27571 Corylus avellana HOM05D004276 ORTHO05D005126 1.6e-39 166.4 130 60.0
PRCOL_00001531 Prasinoderma coloniale HOM05D004276 ORTHO05D005126 2.8e-39 165.6 139 60.4
ATR0585G106 Amborella trichopoda HOM05D004276 ORTHO05D005126 5.3e-38 161.4 98 79.6
Glyma.19G251700 Glycine max HOM05D004276 ORTHO05D005126 1.2e-37 160.2 79 91.1
CDE11G0794 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 1.0e-36 157.1 103 73.8
AT1G26530 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 1.1e-35 153.7 78 87.2
DCAR_005368 Daucus carota HOM05D004276 ORTHO05D005126 4.2e-35 151.8 78 85.9
MBI02_g45291_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 1.8e-33 146.4 77 83.1
Dinv32536 Davidia involucrata HOM05D004276 ORTHO05D005126 2.8e-31 139.0 93 74.2
Hund16683 Selenicereus undatus HOM05D004276 ORTHO05D005126 2.8e-31 139.0 93 74.2
COL.COLO4_06361 Corchorus olitorius HOM05D004276 ORTHO05D005126 1.8e-30 136.3 93 73.1
Lsat_1_v5_gn_2_67120 Lactuca sativa HOM05D004276 ORTHO05D005126 3.4e-29 132.1 141 51.1
Sed0023585 Sechium edule HOM05D004276 ORTHO05D005126 6.7e-25 117.9 115 54.8
Oeu048599.1 Olea europaea HOM05D004276 ORTHO05D005126 3.7e-23 112.1 81 70.4
Actinidia10088 Actinidia chinensis HOM05D004276 ORTHO05D005126 7.0e-22 107.8 54 90.7
CDE11G0451 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 7.7e-21 104.4 49 93.9
Actinidia10089 Actinidia chinensis HOM05D004276 ORTHO05D005126 8.5e-20 100.9 75 69.3
COL.COLO4_16625 Corchorus olitorius HOM05D005906 ORTHO05D007359 4.2e-19 98.6 73 64.4
MBI18_g19490_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 8.0e-18 94.4 80 58.8
SHI12502 Sapria himalayana HOM05D004276 ORTHO05D005126 3.3e-16 89.0 119 48.7
Gohir.A06G141040 Gossypium hirsutum HOM05D004276 ORTHO05D005126 1.7e-12 76.6 46 84.8
RcHm_v2.0_Chr4g0446551 Rosa chinensis HOM05D004276 ORTHO05D005126 2.1e-10 69.7 34 94.1
RcHm_v2.0_Chr1g0326781 Rosa chinensis HOM05D004276 ORTHO05D005126 2.7e-10 69.3 48 75.0
RcHm_v2.0_Chr5g0018241 Rosa chinensis HOM05D004276 ORTHO05D005126 6.1e-10 68.2 50 70.0
SHI29225 Sapria himalayana HOM05D004276 ORTHO05D005126 6.7e-09 64.7 103 39.8
Hma1.2p1_0248F.1_g102040 Hydrangea macrophylla HOM05D001996 ORTHO05D002072 2.0e-08 63.2 29 86.2
RcHm_v2.0_Chr3g0464711 Rosa chinensis HOM05D004276 ORTHO05D005126 3.7e-07 58.9 43 74.4


User provided reference genes

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