Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 0.0e+00 1428.7 728 100.0
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 0.0e+00 1141.7 684 86.0
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 0.0e+00 1139.0 683 85.7
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 0.0e+00 1122.1 682 83.1
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 4.3e-306 1054.3 682 77.7
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 1.3e-302 1042.7 683 80.2
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 3.8e-302 1041.2 683 78.2
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 1.4e-301 1039.3 682 77.7
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 8.7e-299 1030.0 682 75.8
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 1.9e-298 1028.9 682 75.8
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 2.0e-295 1018.8 682 75.2
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 4.5e-295 1017.7 682 75.2
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 5.8e-295 1017.3 682 75.1
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 7.6e-295 1016.9 683 75.3
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 7.6e-295 1016.9 682 74.6
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 2.9e-294 1015.0 682 75.2
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 8.4e-294 1013.4 679 75.0
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 1.1e-293 1013.1 683 75.7
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 1.9e-293 1012.3 682 74.9
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 5.5e-293 1010.7 682 74.9
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 7.1e-293 1010.4 683 74.7
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 9.3e-293 1010.0 684 74.0
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 1.6e-292 1009.2 683 74.8
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 1.6e-292 1009.2 683 75.1
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 3.5e-292 1008.1 682 73.8
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 4.6e-292 1007.7 682 74.2
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 1.8e-291 1005.7 684 74.6
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 2.3e-291 1005.4 683 74.8
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 3.9e-291 1004.6 684 75.3
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 5.1e-291 1004.2 684 73.5
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 6.7e-291 1003.8 682 74.0
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 8.7e-291 1003.4 682 74.6
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 1.1e-290 1003.0 682 73.6
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 2.5e-290 1001.9 739 71.2
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 3.3e-290 1001.5 703 72.0
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 3.3e-290 1001.5 682 73.5
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 4.3e-290 1001.1 682 74.0
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 4.3e-290 1001.1 693 72.6
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 5.7e-290 1000.7 682 75.4
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 2.8e-289 998.4 703 71.8
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 6.3e-289 997.3 682 73.5
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 1.1e-288 996.5 682 73.5
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 1.4e-288 996.1 682 72.6
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 4.1e-288 994.6 682 73.3
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 1.5e-287 992.6 682 73.3
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 4.5e-287 991.1 683 74.5
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 5.9e-287 990.7 683 72.9
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 2.9e-286 988.4 710 70.0
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 3.8e-286 988.0 684 73.1
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 6.5e-286 987.3 682 72.7
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 6.5e-286 987.3 708 72.2
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.9e-285 985.7 682 72.9
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.9e-285 985.7 682 73.2
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 1.9e-285 985.7 682 73.2
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.5e-285 985.3 682 72.9
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 4.2e-285 984.6 682 72.9
ClCG10G015680 Citrullus lanatus HOM05D003395 ORTHO05D004087 7.2e-285 983.8 752 68.2
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 7.2e-285 983.8 682 73.3
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 1.6e-284 982.6 682 73.0
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 2.7e-284 981.9 682 72.9
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 7.9e-284 980.3 682 72.7
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 1.0e-283 979.9 682 71.4
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 1.8e-283 979.2 682 73.3
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 5.1e-283 977.6 682 72.7
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 8.7e-283 976.9 682 73.2
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 4.3e-282 974.5 682 72.1
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 1.3e-281 973.0 682 72.1
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 4.8e-281 971.1 683 72.5
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 2.4e-280 968.8 710 68.6
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 1.5e-279 966.1 682 71.4
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 8.5e-278 960.3 685 71.2
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 2.5e-277 958.7 682 71.1
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 3.2e-277 958.4 682 71.0
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 2.1e-276 955.7 682 71.1
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 6.1e-276 954.1 682 71.3
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 1.4e-275 953.0 682 70.4
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 3.0e-275 951.8 718 67.5
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 5.1e-275 951.0 718 67.5
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 1.1e-274 949.9 682 70.2
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 2.6e-274 948.7 682 70.2
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 4.3e-274 948.0 682 70.2
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 4.3e-274 948.0 683 70.0
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 5.7e-274 947.6 682 70.5
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 9.7e-274 946.8 682 70.2
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 1.3e-273 946.4 683 69.8
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 2.2e-273 945.7 682 69.9
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 4.8e-273 944.5 683 69.8
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.8e-273 944.5 656 72.7
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 4.8e-273 944.5 682 70.1
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 2.4e-272 942.2 656 73.0
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 5.3e-272 941.0 679 69.7
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 5.3e-272 941.0 683 69.4
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 9.1e-272 940.3 683 69.5
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 1.1e-269 933.3 682 69.4
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 1.4e-269 932.9 684 69.4
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 1.4e-269 932.9 684 69.2
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 1.4e-269 932.9 684 69.2
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 1.4e-269 932.9 684 69.4
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 1.9e-269 932.6 686 69.8
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 1.9e-269 932.6 686 69.7
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 2.1e-268 929.1 679 68.3
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 6.1e-268 927.5 683 68.4
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 3.0e-267 925.2 682 69.6
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 8.2e-265 917.1 682 67.7
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 2.4e-264 915.6 683 68.2
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 2.0e-263 912.5 686 68.4
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.3e-262 909.8 683 67.3
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 1.7e-262 909.4 680 66.8
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.8e-262 908.3 720 66.4
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 3.7e-249 865.1 684 63.5
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 7.0e-248 860.9 682 65.1
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 1.4e-235 820.1 630 68.1
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 4.1e-224 781.9 691 57.5
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 2.8e-220 769.2 693 58.0
BcaC07g40053 Brassica carinata HOM05D003395 ORTHO05D004087 3.0e-214 749.2 573 65.3
BcaB06g29192 Brassica carinata HOM05D003395 ORTHO05D004087 3.9e-214 748.8 573 65.4
Hma1.2p1_0556F.1_g178050 Hydrangea macrophylla HOM05D003395 ORTHO05D004087 3.3e-213 745.7 500 73.6
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 5.6e-213 745.0 684 55.7
CDE11G0192 Ceratophyllum demersum HOM05D003395 ORTHO05D004087 4.6e-207 725.3 563 65.4
Eucgr.K01999 Eucalyptus grandis HOM05D003395 ORTHO05D004087 7.3e-205 718.0 538 67.3
AagrBONN_evm.TU.Sc2ySwM_117.1001 Anthoceros agrestis HOM05D003395 ORTHO05D004087 4.3e-189 665.6 597 56.4
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 5.1e-174 615.5 749 45.3
CAN.G624.32 Capsicum annuum HOM05D003395 ORTHO05D004087 1.7e-169 600.5 651 52.7
Thhalv10005836m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 4.2e-160 569.3 501 59.7
SHI10456 Sapria himalayana HOM05D003395 ORTHO05D004087 9.4e-144 515.0 360 68.9
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 5.3e-139 499.2 384 69.3
Eucgr.K01765 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.7e-137 494.2 360 67.2
FvH4_6g38800 Fragaria vesca HOM05D003395 ORTHO05D004087 1.1e-107 395.2 408 50.7
CARHR167540 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.9e-104 384.4 275 68.0
CARHR167550 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.2e-103 381.7 306 68.0
Haze_07832 Corylus avellana HOM05D003395 ORTHO05D004087 2.0e-93 347.8 246 69.1
SEGI_38355 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 1.3e-84 318.5 278 57.9
RcHm_v2.0_Chr2g0152371 Rosa chinensis HOM05D003395 ORTHO05D004087 1.0e-81 308.9 292 54.8
SHI10457 Sapria himalayana HOM05D003395 ORTHO05D004087 3.4e-77 293.9 289 59.2
Lsat_1_v5_gn_4_163840 Lactuca sativa HOM05D003395 ORTHO05D004087 6.0e-74 283.1 243 60.1
Eucgr.K02008 Eucalyptus grandis HOM05D003395 ORTHO05D004087 6.7e-65 253.1 150 77.3
Gohir.A03G107600 Gossypium hirsutum HOM05D003395 ORTHO05D004087 1.2e-61 242.3 205 66.8
CANSAT80G0779 Cannabis sativa HOM05D003395 ORTHO05D004087 1.7e-60 238.4 137 90.5
Cre17.g717800 Chlamydomonas reinhardtii HOM05D003395 ORTHO05D004087 6.5e-60 236.5 749 27.2
Oeu023127.1 Olea europaea HOM05D003395 ORTHO05D004087 1.3e-57 228.8 228 56.6
PGSC0003DMG402030272 Solanum tuberosum HOM05D003395 ORTHO05D004087 1.5e-56 225.3 174 67.2
RcHm_v2.0_Chr2g0152381 Rosa chinensis HOM05D003395 ORTHO05D004087 1.3e-55 222.2 288 46.2
Sabra18G0065400 Salix brachista HOM05D003395 ORTHO05D004087 6.5e-52 209.9 126 85.7
CAN.G4526.1 Capsicum annuum HOM05D003395 ORTHO05D004087 1.9e-51 208.4 175 62.9
Lsat_1_v5_gn_4_147041 Lactuca sativa HOM05D003395 ORTHO05D004087 2.5e-51 208.0 153 64.7
Actinidia17665 Actinidia chinensis HOM05D003395 ORTHO05D004087 2.3e-49 201.4 150 67.3
PRCOL_00003855 Prasinoderma coloniale HOM05D003395 ORTHO05D004087 5.1e-49 200.3 647 28.6
PGSC0003DMG401030272 Solanum tuberosum HOM05D003395 ORTHO05D004087 3.3e-48 197.6 126 75.4
Lsat_1_v5_gn_1_62780 Lactuca sativa HOM05D003395 ORTHO05D004087 2.5e-43 181.4 215 50.2
FAN09G3727 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.6e-40 171.4 256 41.0
Lj3g0025487 Lotus japonicus HOM05D003395 ORTHO05D004087 7.0e-38 163.3 109 73.4
SHI37552 Sapria himalayana HOM05D003395 ORTHO05D004087 8.0e-34 149.8 174 47.1
MD00G1107400 Malus domestica HOM05D003395 ORTHO05D004087 3.0e-33 147.9 135 59.3
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 4.4e-32 144.1 122 70.5
Eucgr.K02007 Eucalyptus grandis HOM05D003395 ORTHO05D004087 3.7e-31 141.0 94 71.3
Oeu023124.1 Olea europaea HOM05D004521 ORTHO05D010236 3.1e-30 137.9 106 73.6
SEGI_24724 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 6.5e-28 130.2 87 75.9
SHI32633 Sapria himalayana HOM05D003395 ORTHO05D004087 1.2e-26 125.9 99 64.6
BcaB06g29194 Brassica carinata HOM05D003395 ORTHO05D020046 5.3e-22 110.5 86 74.4
CDE11G0660 Ceratophyllum demersum HOM05D003395 ORTHO05D010236 2.0e-21 108.6 65 84.6
FvH4_4g17140 Fragaria vesca HOM05D003395 ORTHO05D020046 1.8e-17 95.5 74 73.0
SHI34459 Sapria himalayana HOM05D003395 ORTHO05D004087 3.0e-17 94.7 94 44.7
SHI33206 Sapria himalayana HOM05D003395 ORTHO05D004087 6.8e-17 93.6 73 58.9
FAN12G3185 Fragaria x ananassa HOM05D003395 ORTHO05D020046 2.6e-16 91.7 74 71.6
SHI25400 Sapria himalayana HOM05D003395 ORTHO05D004087 3.4e-16 91.3 107 46.7
SHI17502 Sapria himalayana HOM05D003395 ORTHO05D004087 7.5e-16 90.1 69 60.9
Actinidia17662 Actinidia chinensis HOM05D003395 ORTHO05D004087 9.8e-16 89.7 48 81.2
AL4G39910 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 4.1e-14 84.3 60 66.7
FAN12G1311 Fragaria x ananassa HOM05D003395 ORTHO05D020046 3.5e-13 81.3 74 67.6
Eucgr.E01623 Eucalyptus grandis HOM05D003395 ORTHO05D004087 3.8e-12 77.8 60 61.7
SHI37781 Sapria himalayana HOM05D003395 ORTHO05D004087 5.0e-12 77.4 65 56.9
SHI17504 Sapria himalayana HOM05D003395 ORTHO05D004087 1.9e-11 75.5 85 49.4
Cfa026182 Carpinus fangiana HOM05D003395 ORTHO05D004087 3.3e-11 74.7 404 21.0
AagrBONN_evm.TU.Sc2ySwM_117.981 Anthoceros agrestis HOM05D003395 ORTHO05D004087 9.5e-11 73.2 82 50.0
CARHR254100 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.6e-10 72.4 53 62.3
CSS0011071 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D020046 2.1e-10 72.0 44 81.8
SHI48926 Sapria himalayana HOM05D003395 ORTHO05D004087 2.8e-10 71.6 65 52.3
SHI34713 Sapria himalayana HOM05D003395 ORTHO05D004087 3.6e-10 71.2 94 43.6
CSS0037734 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D020046 4.7e-10 70.9 44 84.1
SHI40122 Sapria himalayana HOM05D003395 ORTHO05D004087 6.1e-10 70.5 122 35.2
SHI32634 Sapria himalayana HOM05D003395 ORTHO05D004087 3.0e-09 68.2 63 54.0
SHI34458 Sapria himalayana HOM05D003395 ORTHO05D004087 6.3e-07 60.5 52 55.8
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.8e-06 58.9 34 76.5
Gohir.A11G228904 Gossypium hirsutum HOM05D000002 ORTHO05D004087 9.2e-06 56.6 56 53.6


User provided reference genes

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